Tbp. Per Relative mrna levels Circadian Time. Liver weight/ body weight (%) n.s. Pernull
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- Rodger Rice
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1 Liver weight/ ody weight (%) Dy Body weight (g) Reltive mrna levels Reltive mrna levels Reltive mrna levels Reltive mrna levels Dy Per1 Per2 Per3 Tp Cirdin Time Cirdin Time Mouse ge (week) Cirdin Time d Cirdin Time 2- Pernull (hour) LD DD (hour) LD DD Supplementry Figure 1. Chrteriztion of the si physiologil nd ntomil profiles of mie. () qrt-pcr nlysis showing the expression of Per1, Per2 nd Per3 mrna in nd liver t indited times. Note ler irdin rhythms of Period genes in re ompletely olished in mie. Vlues represent the men ± SEM. (n = 3). () Representtive doule-plotted togrm of nd mie. Mie (n = 1 t eh genotype) were initilly housed in 12L:12D light-drk yle (LD; light on 8: nd light off t 2:) nd susequently trnsferred to onstnt drkness (DD). mie entrined their tivity rhythms to the environmentl LD yles, nd showed ler irdin rhythmiity (period length: ±.23 h, n = 1) in DD onditions. Note tht mie, whih lk the lok osilltory mhinery, showed no rhythms in DD onditions ut still displyed dy-night differene of tivity in LD yle due to the msking effet of light. White nd gry kground indites lights on nd off, respetively. () The hnge of ody weight of nd mie during postntl development. mie did not show ny prominent normlity in development, nd developmentl weight gin ws virtully identil to tht of wild-type mie, when fed norml diet. Men ± SEM. (n = 7);, sttistilly not signifint. (d) The profile of ody-weight- normlized liver weight of nd mie mintined on stndrd diet smpled t 12 weeks of ge. Men ± SEM.; Student s t-test (n = 1)., sttistilly not signifint. Tp, TATA-ox inding protein.
2 j k h i f g d e l Supplementry Figure 2. Histologil setions in vrious orgns in nd mie. We performed hemtoxylin nd eosin stining in () smll intestine, () liver, () lrge intestine (olon), (d) pnres (exorine glnd nd islet of Lngerhns), (e) kidney (ortex), (f) drenl (ortex, (g) lung (lveolus nd ronhil epithelium), (h) testis, (i) skin (epithelium nd hir follile), (j) spleen (white pulp nd red pulp), (k) rdi musle, nd (l) ererl ortex in nd mie. Prformldehyde-fixed prffin emedded setions ( mm in thikness) were histologilly nlyzed y lightmirosopy (Olympus). Note no polyploidy ws oserved in ll tissue exmined exept liver. Sle rs, 1 mm.
3 (Per1+/+Per2+/+Per3+/+) Per1KOPer2Brdm1 (Per1-/-Per2m/mPer3+/+) 2 (Per1-/-Per2m/mPer3-/-) Nuler size of 6 3 Nuler size of 3 Per3KO (Per1+/+Per2+/+Per3-/-) Per2Brdm1 (Per1+/+Per2m/mPer3+/+) Per1KO (Per1-/-Per2+/+Per3+/+) Per1-/-Per2+/+Per3+/ Per1-/-Per2+/+Per3+/ Per1+/+Per2m/mPer3+/+ Perentge (%) Per1+/+Per2+/+Per3-/ Perentge (%) 3 Per1+/+Per2m/mPer3+/ Per1+/+Per2+/+Per3-/ Per1+/+Per2m/mPer3-+/ Per1+/+Per2m/mPer3-/ 1 1 Nuler size (mm2) Nuler size (mm2) Supplementry Figure 3. Effet of Period genotype on nuler size of heptoytes in vivo. () Representtive exmples of Hoehst-3332 stined nulei round entrl vein () nd portl vein () in livers from nd indited Period mutnt mie. Quntittive dt show the frequeny distriution of nuler size of entro-mid loulr heptoytes () () nd periportl heptoytes () () nlyzed y Hoehst-3332 histologil stining. Note genotype speifi enlrgement ours only in ut not in. Vlues re men ± SEM., n > 1 ells, 3 experiments. Sle rs, 1 mm.
4 Perentge (%) Perentge (%) Perentge (%) Time (min x 1) Time (min x 1) Perentge (%) Time (min x 1) Time (min x 1) Mononuleted heptoytes Bipolr Heptoyte type Bi-nuleted heptoytes Mitoti types Tripolr Tetrpolr Rtio of proliferting ells Trinuleted heptoytes d Time of first ell dividing fter seeding Cell seeding (i) 1st dividing (ii) Intervl etween 1st nd d ell d dividing Dispperne of nuler envelope Intervl etween d nd 3rd ell (iii) 3rd dividing Durtion of ell Cytokinesis & kryokinesis Repperne of nuler envelope Timing of first nd intervls etween ell Durtion of ell Mononulete () () () Mononulete 1st d 3rd Binulete n.d. () () () Binulete n.d. 1st d 3rd e Cytokinesis filure without ontrtile ring formtion : hh:mm : 1: 1:2 1: 2: 3: mm C C f mm ** Norml ytokinesis / mononulete / iulete / mononulete / inulete Cytokinesis filure without ontrtile ring formtion Asission filure Supplementry Figure. Heptoyte primry ulture: si dt nd time-lpse imges of heptoyte primry ulture. (-d) Quntittive nlyses of ell types (), types (), nd the rtio of proliferting ells () from time-lpse imges of heptoytes in ulture. The perentge of mono-, i-, nd tri- nulete heptoytes (), the perentge of ipolr, tripolr nd tetrpolr of heptoytes (), nd the perentge of proliferting ells () show no differene etween nd heptoytes. (d) Detiled nlysis of mitoti events in heptoytes in primry ulture. Shemti presenttion of time ourse of ultured heptoytes (left-upper figure) nd the third mitoti events (left-lower figure). After ell seeding, mitoti events were oserved for 3 times, nd we mesured intervls etween these events. (i) indites the time of first ell fter seeding, (ii) indites the intervl etween first nd seond ell, nd (iii) indites the intervl etween seond nd third ell. We lso mesured the durtion of ell, whih indites the time etween the dispperne nd repperne of the nuler envelope in the first, the seond nd the third mitosis. Aove quntifition ws performed in eh ell type (mono- nd i-nulete heptoytes). Note the intervl time etween eh ell (upper pnel), nd durtion of ell (lower pnel) hve no signifint differene etween nd heptoytes. All dt in (-d) strongly suggest tht there re no genotype-speifi si mitoti events in the present ulture system. Vlues re men ± SEM. (, n = 26;, n = 717; experiments)., sttistilly not signifint. n.d., not deteted. (e), Representtive time-lpse imges of ultured heptoytes showing ytokinesis filure without ontrtile ring formtion. We lssified ytokinesis of heptoytes into three groups: (1) norml ytokinesis, (2) ytokinesis filure without ontrtile ring formtion, nd (3) sission filure (see Supplementry Movie 1). (1) nd (3) re presented in Fig. 3, nd here (2) is shown: Yellow rrows indite the loliztion of nulei nd hromosomes of dividing heptoytes. Crtoons orresponding to time-lpse imges re shown with the numer of hromosomes () in the gmetes (n). (f) Quntifition of the perentge of three types of ytokinesis from time-lpse imging: (1) norml ytokinesis, (2) ytokinesis filure without ontrtile ring formtion, nd (3) sission filure. Among three groups, only the sission filure is inresed in heptoytes ompred to. Vlues represent the men ± SEM., **P<.1, P<.1 y Student s unpired t-test (, n = 26 ells;, n = 717 ells from experiments for eh group. Continued to next pge.
5 g Asission filure followed y norml ytokinesis -1: hh:mm : : 1: 1:2 1: 2: mm mm 3: : 8: 1: 1:1 1: 16:1 16:2 16: 17: 23:3 28:3 38:3 Supplementry Figure. (ontinued) (g) Representtive time-lpse imges of ultured heptoytes showing formtion of enlrged nuleus with n sission filure followed y norml ytokinesis (see Supplementry Movie 2). First, the ell with (sed on Hoehst stining) nuleus entered into S-phse to eome, then progressed to M-phse ut filed sission, resulting in inuler heptoyte ( 2). This ell then strted seond S-phse ( 2), went into seond M-phse with oth nulei fusing, performed ytokinesis suessfully, nd then eme 2 mononuleted heptoytes eh with single enlrged nuleus ( 1; 2 ells). Thus, two ell yles, the first filing sission, led to polyploid heptoytes with single enlrged nuleus. Yellow rrows indite the loliztion of nulei nd hromosomes of dividing heptoytes. Blue rrows exhiit interellulr ridges etween dughter ells. Below, rtoons orresponding to time-lpse imges re shown, demrting opy numer of hromosome. The sttes of interellulr ridge (round 2- min) etween dughter ells re lue-underlined. See text for further detils. Sle rs (e, g), mm.
6 pakt (Ser73) / pnakt (%) pakt(thr38) / pnakt (%) IR IRS1 IRS PI3K PDK Sh1 Sos1 Rs p8 Phospho-Akt (Thr38) Phospho-Akt (Ser73) Akt -Rf pnakt S6 mtor Mek1/2 Phospho-S6 Riosoml Protein (Ser23/236) RhoA S6 Riosoml Protein F-tin Phospho-p/2 MAPK() (Thr22/2 /Thr18/187) Cytokinesis p/2 MAPK() tin (nm,1min) pakt (Thr38) ps6 (Ser23/236) nm nm nm nm nm nm pakt (Ser73) / totl Erk (%) ps6 (Ser23/236) / S6 (%) (Thr22/2, Thr18/187) nm nm nm nm nm nm Supplementry Figure. Kinse tivities in insulin signling pthwys in ultured heptoytes: genotype speifiity. () Shemti representtion showing two mjor insulin downstrem signling pthwys in liver. () Immunolots of ultured heptoytes with insulin tretment s indited. () Quntittive dt displyed the level of phosphoryltion of Akt (Thr38 nd Ser73), S6 (Ser23/236), nd (Thr22/2, Thr18/187). Although insulin dose-dependently tivtes ll these kinses in oth genotypes, the extent of tivtion of ws severely dmped in heptoytes. Duplite experiments showing indited vlue of one smple t nm insulin tretment eing 1 %.
7 GS CT12/ CT/ PCS (GS+) ** Heptoytes surrounding PCS (GS-) 1 CT12/ CT/ Nuler size 2 3 Nuler squre (mm2) / ell d (Brown)/ GS(Cyn) CT/ Cirdin hnge of stinings in mture heptoytes surrounding PCS CT/ Perentge of perk -positive ells (%) CT CT/ e CT/ CT CT8 CT12 CT16 CT2 perk BrdU f BrdU merged g Mouse ge (weeks) Ki67 i Delopmentl hnges of BrdU-lelled ells Mie ge (weeks) BrdU positive ell/ x1 mm2 Development of nuler sizes of heptoytes Nuler size mm2 h Ki67 BrdU positive ell/ x1 mm2 Mie ge (weeks)
8 Supplementry Figure 6. Distriution of in perientrl stem ells (PCS) nd its neighoring mture heptoytes. () Perientrl stem ells (PCS) re mrked y glutmine synthetse (GS) (Wng et l. 21). PCS leled y GS were distriuted round in oth nd mie. Note the nuler size of PCS were two-third diploid nd one-third tetrploid () in (lk rrows, left figure), nd this tendeny does not hnge in heptoytes (lk rrows, right figure). In ontrst, heptoytes surrounding PCS, presumly the desendnts of PCS (Wng et l. 21), showed mostly in (lue rrows, left figure), ut mostly - 16n high polyploidy in heptoytes (red rrows, right figure). Lower grph represents the quntifition of nuler sizes in PCS nd heptoytes surrounding PCS. Note the nuler sizes of PCS do not hnge etween two genotypes, lthough there is mrked enlrgement of mture heptoytes in Pernull strin. () immunohistohemistry ner region t CT nd CT12 in nd mie. Note the PCS ells show fint expression of even t CT, the pek time of expression. () Doule stining of (rown) nd GS (yn), mrker of heptoytes surrounding the entrl vein (), in liver of nd mie. Note tht ws expressed in entro-midloulr heptoytes () entering the, ut not in periportl heptoytes () surrounding the portl vessels () in mie t CT. However, signls in heptoytes were no longer oserved in mie, lthough glutmine synthetse ws not ltered in either genotype. (d) Quntittive immunohistohemil nlysis of irdin expression of positive ells in mture heptoytes surrounding PCS. Perentge of positive ells in mture heptoytes surrounding PCS were ounted in (lk) nd mie (red) t h intervls in onstnt drk onditions. Vlues represent the men ± SEM., P<.1 (n = 3 for eh time point in nd mie)., no sttistil signifine. (e) Dul immunofluoresene with BrdU (green) nd (red) ntiodies in liver. Their merged imge is shown in lower left. Arrows indite tht ell is in S-phse. BrdU (.1 mg/g ody weight; Sigm, St. Louis, MO) ws injeted t 1 weeks of ge 1hr efore srifie t dwn (ZT). Note BrdU leled ell ws on the peripherl order ( side) of expressing ell group in hepti loule. (f) Lotion of BrdU positive ells in liver. For omprison, we lso heked BrdU lelling (DAB; rrow) in heptoytes, ut, sine heptoytes do not show immunoretivity, it is impossile to relily relte the two. In single stined histologil setions, however, we found tht BrdU ells were lso loted on the peripherl order of lrge sized polyploid ells. (g) Ki67-immunopositive ells in the hepti loule (h) of nd dult mie. (h, i) Quntittive nlyses of the development of nuler sizes (h) nd the numer of BrdU-inorported ells (i) in nd liver (men ± SEM; n= t eh developmentl stge for eh genotype; injetion protool nd tissue preprtion re the sme s (e). (i) In oth genotypes, the verge nuler size inreses ording to the development from 2 to 1 weeks. Although there ws no signifint differene etween genotype in 2 weeks old mie (see lso Fig. 1g), the inrese of nuler ploidy eme prominent in weeks-old mie, nd further inresed until 1 weeks. In two-wy ANOVA, the min effet of time nd genotype were oth signifint. (j) Developmentl nlysis demonstrted tht the shrp ge-dependent deline of BrdU lelling in oth genotypes: the tul lelling of heptoytes derese more thn times y 1 weeks, ompred to 2 weeks. In twowy ANOVA, only the min effet of time ws signifint in nd. These dt lerly demonstrted tht ge-dependent inrese in ell size (showing the degree nd the proportion of polyploidy ells) is inversely proportionl to the numer of proliferting ells. Sle r, Brs = 2 μm (e), mm (,, f), 2 mm (, g). See lso the following Supplementry Disussion for Fig. 6.
9 Conentrtion (fmole/ l) Conentrtion (fmole/ l) Conentrtion (fmole/ l) pmek1/2 / totl Mek (%) Conentrtion (fmole/ l).3 Mek1.6 Mek2 (nm, 1min) pmek1/2.2. Mek1/2 tin.1. CT6 CT18 CT6 CT18.2. CT6 CT18 CT6 CT nm nm nm nm nm nm / CT6 / CT18 / CT6 / CT Mkp1 (Dusp1) ** * Mkp2 (Dusp) Mkp3 (Dusp6)...3 Mkp (Dusp9) Mkp (Dusp1) Mkp6 (Dusp1) Mkp7 (DUSP16) P1(DUSP2) Vhr (Dusp3) * Gm337 (Dusp) Pyst2 (Dusp7) Jkp (Dusp22) Tp ** ** * Supplementry Figure 7. Enzymes regulting phosphoryltion in heptoytes. () qpcr nlyses of up-strem kinses Mek1 nd Mek2 mrna t sujetive dy (CT6) nd sujetive night (CT18) in nd livers. Neither Mek1 nor Mek2 showed signifint differene for dy-night nd genotypes. () Immunolots of Mek1/2 kinses in ultured heptoytes fter tretment with insulin. Although Mek1/2 phosphoryltion is sensitive to insulin tretment, there ws no genotype differene t eh onentrtion of insulin. () qpcr nlyses of Erk phosphtses, nmely Mkp fmily, t CT6 nd CT18 in nd livers. Note tht Mkp1 ws the only gene showing dily rhythm in, nd inresed in mie. Vlues re the men ± SEM. (n = ), *P <., **P <.1, P <.1.
10 Supplementl Figure 8. Visuliztion of previously reported ChIP-seq signls for BMAL1 (lue) nd CLOCK (green) on Mkp1 (Dusp1) nd Per2. Here we present the previously reported Mkp1 (Dusp1) nd Per2 dt on ChIP-seq signls for BMAL1 (lue) y Annyev et l. in J Biol Chem 289, 13-2, 21 (SRA ID: SRX1 nd SRX2); nd CLOCK (green) y Yoshitne et l. in Mol Cell Biol 3, , 21 (SRA ID: DRX1196). In oth reports, livers t ZT8 were nlyzed, nd pek lling nlysis reveled signifint peks in the proximity of this E-ox. BigWig files tht orrespond to eh ChIP-seq experiment were downloded from the ChIP-Atls wesite ( nd visulized with the Integrtive Genomis Viewer ( Arrow indites the position of the Mkp1 E-ox, to whih the inding of CLOCK nd BMAL1 hs een onfirmed in ChIP-seq experiments, leit with lower ffinity thn to the Per2 E -ox (sterisk).
11 Perentge (%) Control 2 mm U126 8 mm BCI tin 8 h fter infetion 72 h fter infetion 96 h fter infetion 12 h fter infetion Lenti- GFP Lenti- GFP- Mkp1 Mkp1 1 h fter infetion 168 h fter infetion 192 h fter infetion 216 h fter infetion tin d 9 8 ** * / GFP (-) / GFP (+) 7 / GFP-Mkp1 (+) Suessful ytokinesis Cytokinesis filure without ontrtile ring formtion Asission filure Supplementry Figure 9. Regultion of phosphoryltion in ultured heptoytes: phrmologil regultion nd lentivirus-medited Mkp1 trnsdution. () nd totl fter tretment with MEK inhiitor (U126) or MKP1 inhiitor (BCI) in heptoytes isolted from liver. Note tht dereses fter U126 tretment, nd inreses fter BCI tretment. (, ) nd totl fter the overexpression of GFP-leled Mkp1 to heptoytes y lentivirl vetor. Time-ourse imges of GFP expression fter the trnsdution with lentivirus rrying GFP-leled Mkp1 (Lenti-GFP- Mkp1) () Immunolots of Mkp1 from ultured heptoytes trnsdued with Lenti-GFP-Mkp1 or with ontrol lentivirus rrying GFP (Lenti-GFP). () Protein lystes were extrted from the heptoytes fter 192 h of virus infetion. (d) Quntifition of three types of ytokinesis fter the overexpression of Lenti-GFP-Mkp1 or Lenti-GFP in ultured heptoytes (/GFP(-), n = 27, /GFP(+) n = 29, /GFP-Mkp1(+), n = 189; 3 experiments for eh group). All vlues represent the men ± SEM. *P<., **P<.1, P<.1. Sle r, mm.
12 MKP Atin Atin 7 Atin d e f p/2 MAPK () pnakt 7 pmek1/2 7 7 Phospho-Akt (Thr38) Phospho-p/2 MAPK() (Thr22/2 /Thr18/187) 3 p8 7 Phospho-Akt (Ser73) Mek1/2 Atin Atin Atin IR 3 7 S6 Riosoml Protein MKP1 IRS1 17 Atin 3 Phospho-S6 Riosoml Protein (Ser23/236) 3 Supplementry Figure 1. Imges of unropped Western lots shown in Fig. (), Fig. (), Supplementry Fig. (), Supplementry Fig. 7 (d), Supplementry Fig. 9 (e), nd Supplementry Fig. 9 (f).
13 Supplementry Disussion Differene of expression in pluripotent perientrl stem ells (PCS) nd mture heptoytes surrounding PCS. It is interesting to note tht the Mkp1- pthwy ppers wek in perientrl stem ells (PCS) (Wng et l. 21) lining the entrl vein, ut more tive in mture surrounding PCS, whih re possile desendnts of PCS (Wng et l. 21). Sine Ki67-expressing ells, representing the ells in growth frtion (ells out of G ), were sprsely distriuted ut dominntly loted in the midloulr region (Supplementry Fig. 6g), the mture thus pper to ply entrl role in homeostti renewing proess of orgn mss, in ontrst to pluripotent PCS stem ells. The seprtion of pluripotent stem ells nd prolifertive ells is ommonly known in most tissues suh s smll intestine 1. Here, prolifertive heptoytes were dispersed mong silent G heptoytes (Supplementry Fig. 6g). Although orreltion etween rte of prolifertion nd liver polyploidiztion hs een reported 2, 27, 71, no suh orreltion ws found in liver (Supplementry Fig. 6i). Supplementry Referenes 71 Gupt, S. Hepti polyploidy nd liver growth ontrol. Semin Cner Biol. 1, (2)
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