CLINICAL SCIENCES. Molecular Testing for Hereditary Retinal Disease as Part of Clinical Care

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1 CLINICAL SCIENCES Molecular Testing for Hereditary Retinal Disease as Part of Clinical Care Katy Downs, MS; David N. Zacks, MD, PhD; Rafael Caruso, MD; Athanasios J. Karoukis, BS; Kari Branham, MS; Beverly M. Yashar, MS, PhD; Mark H. Haimann, MD; Karmen Trzupek, MS; Meira Meltzer, MA, MS; Delphine Blain, ScM, MBA; Julia E. Richards, PhD; Richard G. Weleber, MD; John R. Heckenlively, MD; Paul A. Sieving, MD, PhD; Radha Ayyagari, PhD Objective: To describe clinical molecular testing for hereditary retinal degenerations, highlighting results, interpretation, and patient education. Methods: Mutation analysis of 8 retinal genes was performed by dideoxy sequencing. Pretest and posttest genetic counseling was offered to patients. The laboratory report listed results and provided individualized interpretation. Results: A total of 350 tests were performed. The molecular basis of disease was determined in 133 of 266 diagnostic tests; the disease-causing mutations were not identified in the remaining 133 diagnostic tests. Predictive and carrier tests were requested for 9 and 75 nonsymptomatic patients with known familial mutations, respectively. Conclusions: Molecular testing can confirm a clinical diagnosis, identify carrier status, and confirm or rule out the presence of a familial mutation in nonsymptomatic at-risk relatives. Because causative mutations cannot be identified in all patients with retinal diseases, it is essential that patients are counseled before testing regarding the benefits and limitations of this emerging diagnostic tool. Clinical Relevance: The molecular definition of the genetic basis of disease provides a unique adjunct to the clinical care of patients with hereditary retinal degenerations. Arch Ophthalmol. 2007;125: Author Affiliations: Department of Ophthalmology and Visual Sciences, W. K. Kellogg Eye Center, University of Michigan, Ann Arbor (Mss Downs and Branham, Drs Zacks, Yashar, Richards, Heckenlively, Sieving, and Ayyagari, and Mr Karoukis); Departments of Otolaryngology Head and Neck Surgery (Ms Downs) and Epidemiology (Dr Richards), University of Michigan; National Eye Institute, National Institutes of Health, Bethesda, Md (Drs Caruso and Sieving and Mss Meltzer and Blain); Retina Consults of Michigan, Southfield (Dr Haimann); Casey Eye Institute, Oregon Health & Science University, Portland (Ms Trzupek and Dr Weleber); and MedStar Research Institute, Hyattsville, Md (Ms Blain). RETINAL DYSTROPHIES ARE A phenotypically and genotypically heterogeneous group of diseases that are inherited in autosomal dominant, autosomal recessive, X-linked, mitochondrial, and complex modes. 1-4 The clinical signs and symptoms of retinal diseases cover a broad continuum within and between specific disease entities. 3,5-7 The complex and overlapping nature of these phenotypes can prove challenging to the clinician in making the diagnosis. Molecular confirmation of the diagnosis can afford the ophthalmologist the opportunity to make an unequivocal diagnosis, verify etiology, provide prognosis, and calculate the recurrence risk. Once the familial mutation is identified, a molecular diagnosis can rule in or rule out the presence of a causative mutation for the patient and other at-risk family members. Clinical molecular testing is available to aid in the evaluation of more than 950 genetic conditions, including ocular diseases, syndromes whose phenotypes include ocular findings, and others with no known ocular involvement. 8 Molecular genetic tests can be requested for diagnostic, predictive, carrier, prenatal, and preimplantation testing. Diagnostic testing is used to confirm the molecular basis of disease in patients exhibiting signs of disease. Predictive testing can be provided to nonsymptomatic individuals whose family history puts them at risk of developing the disease. Carrier testing can identify males and females who have 1 mutation for a disease inherited in an autosomal recessive mode and identify females who have 1 mutation for a disease inherited in an X- linked recessive mode. At the University of Michigan W. K. Kellogg Eye Center s Ophthalmic Molecular Diagnostic Laboratory, we have offered Clinical Laboratory Improvement Amendment (CLIA) approved molecular diagnostic testing for the past 5 years. In this report, we describe our initial experience regarding the utility, scope, and limitations of this testing and the importance of patient education and counseling. 252

2 METHODS Blood samples were submitted with a genetic test request form that included patient name, date of birth, sex, ethnic background, test(s) needed, indication for referral, family history depicted in pedigree format, and the DNA testing consent form signed by the patient or the parent or guardian of a pediatric patient. Referrals for molecular testing were received from clinicians within and outside the institution. Most referrals were received from ophthalmologists and genetic counselors in several parts of the United States; a few requests for testing were received from outside the country. The laboratory director (R.A.) and genetic counselor (K.D., K.B., or B.M.Y.) were available to provide pretest consultation regarding the testing protocol and the likelihood that the diagnostic test will confirm the molecular basis for the retinal disease in question. The laboratory clinical hereditary retinal specialist ( J.R.H. or P.A.S.) was available to review ocular clinical records in cases in which the clinician had questions about which test to order. On-site pretest and posttest genetic counseling was available to patients and their family members. DNA was isolated from blood samples using standard protocols. For diagnostic tests of the ABCA4 gene (the adenosine triphosphate binding cassette, subfamily A, member 4 gene), preliminary analysis for known mutations and polymorphisms was performed by an outside laboratory using the ABCA4 chip, as described previously. 9 Mutations identified in this manner were confirmed by sequencing relevant exons in the laboratory according to our clinical protocol following CLIA guidelines. If fewer than 2 causative mutations were identified using the ABCA4 chip, and for analysis of all other genes, sequencing was performed by amplification of all exons and at least 20 base pairs of flanking intronic sequence using primers described previously. 6,10-16 In cases of predictive or carrier testing in which the familial mutation was known, only the exon in question was analyzed. Amplicons were sequenced in both directions using polymerase chain reaction primers and a cycle-sequencing reaction, and were separated using a genetic analyzer (ABI Prism 3100; Applied Biosystems, Foster City, Calif), as described earlier. 17 Current technology can detect 1 or a few nucleotide substitutions, minor deletions, and minor insertions in the coding region. Large deletions, large insertions, and mutations in noncoding regions are types of mutations that cannot be detected by current methods and, thus, would not be identified. To determine if a newly identified sequence change was pathogenic, DNA, when available, from the patient s parents or affected blood relative(s) was screened for the change in question. Sequence changes, novel and previously published, were compared with DNA analysis of at least 100 chromosomes from control subjects of similar ethnicity (also A.J.K. and R.A., unpublished data, 2006). A written report provided test results and interpretation, the laboratory methods used, published detection rate when available, and references. Sequence variations were classified in the report as previously reported disease-causing mutations (causative mutations), previously reported polymorphisms (neutral changes), novel sequence changes believed to be disease causing (potentially pathogenic), novel sequence changes believed to be noncausative variations (potentially neutral), or changes of unknown significance. Novel changes were classified as potentially pathogenic or potentially neutral polymorphic changes based on the expected effect of the change on the amino acid sequence and/or gene structure. 22 RESULTS Table 1. Retinal Diseases Associated With the 8 Genes Tested Gene* No. of Exons Retinal Disease Mode of Inheritance ABCA4 50 Stargardt macular degeneration AR Fundus flavimaculatus AR Cone-rod dystrophy AR Retinitis pigmentosa AR C1QTNF5/ 3 Late-onset retinal degeneration with AD CTRP5 early-onset anterior zonules EFEMP1 12 Malattia leventinese AD Doyne honeycomb dystrophy AD ELOVL4 6 Dominant Stargardtlike macular AD degeneration RDS 3 Pattern dystrophy AD Butterfly macular dystrophy AD Adult-onset foveomacular dystrophy AD Bull s-eye maculopathy AD Adult-onset Best disease AD Late-onset dominant macular AD degeneration Additional RDS phenotypes AR or AD TIMP3 5 Sorsby fundus dystrophy AD VMD2 11 Best macular degeneration, AD childhood onset Adult-onset vitelliform macular AD degeneration RS1 6 X-linked retinoschisis X linked Abbreviations: AD, autosomal dominant; AR, autosomal recessive. *The ABCA4 gene is the adenosine triphosphate binding cassette, subfamily A, member 4 gene; C1QTNF5/CTRP5, C1Q tumor necrosis factor related protein-5 gene; EFEMP1, epidermal growth factor containing fibulinlike extracellular matrix protein 1 gene; ELOVL4, elongation of very long chain fatty acid 4 gene; RDS, peripherin gene; TIMP3, tissue inhibitor of metalloproteinase 3 gene; VMD2, vitelliform macular dystrophy 2 gene; and RSI, retinoschisin gene. We describe the results of our initial 350 molecular tests. Table 1 lists the 8 genes tested with their corresponding clinical phenotypes. Table 2 lists the 266 diagnostic, 9 predictive, and 75 carrier tests performed. The molecular basis of disease was confirmed in 133 of the 266 diagnostic tests. Of the 9 predictive tests performed, 4 determined that the nonsymptomatic patients did share the genotype of an affected relative; the remaining 5 did not inherit the familial mutation. Of the 75 females who underwent XLRS1 gene (the gene responsible for X-linked juvenile retinoschisis) carrier testing, 47 were carriers. These data represent test results of patients referred for genetic testing without restriction based on phenotypic inclusion and exclusion criteria; in addition, members of the same family referred for diagnostic testing were included in these results. Therefore, these figures do not reflect the true detection rates. We identified 44 novel sequence changes (Table 3). Of these changes, 30 were potentially pathogenic and 14 were classified as potentially neutral polymorphisms or changes of unknown significance. ABCA4 GENE The ABCA4 gene is composed of 50 exons, and more than 320 pathogenic sequence changes have been reported. 9,14,18 Diagnostic tests were ordered for 152 patients whose differential diagnosis included Stargardt macu- 253

3 Table 2. Results of Clinical Molecular Testing of the 8 Retinal Genes Test Type Diagnostic Predictive Carrier No. of Confirmed No. of Confirmed Ruled Out No. of Confirmed Ruled Out Total Gene* Tests Molecular Basis Tests Familial Mutation Familial Mutation Tests Familial Mutation Familial Mutation Tests ABCA (48) 3 2 (67) 1 (33) NA NA NA 155 C1QTNF5/ 2 2 (100) NA NA NA NA NA NA 2 CTRP5 EFEMP1 3 1 (33) NA NA NA NA NA NA 3 ELOVL (4) NA NA NA NA NA NA 23 RDS 13 4 (31) NA NA NA NA NA NA 13 TIMP (27) 5 2 (40) 3 (60) NA NA NA 16 VMD (83) NA NA NA NA NA NA 12 RS (78) (100) (63) 28 (37) 126 Total (50) 9 4 (44) 5 (56) (63) 28 (37) 350 Abbreviation: NA, data not applicable. *The genes are described in the second footnote to Table 1. Data are given as number (percentage) of tests for that type. lar degeneration, fundus flavimaculatus, and/or cone-rod dystrophy. Because these are all autosomal recessive diseases, the identification of 2 causative mutations is necessary to confirm the molecular basis of disease. We identified 2 or more causative mutations or potentially pathogenic changes in 73 of the 152 samples submitted for diagnostic testing, thus confirming the molecular basis for disease in 48% of those tested. While we found exactly 2 causative mutations in 60 of these 73 samples, we identified 3 causative mutations in 10 samples and 4 causative mutations in 3 samples. Among all the changes detected, we identified 24 novel potentially pathogenic changes and 12 novel changes that were potentially neutral changes or changes of unknown significance (Table 3). Of the remaining 79 samples in which the molecular basis of disease was not defined, a single previously reported or potentially pathogenic change was identified in 34 samples, and none in 45 samples. Of these 79 patients, 8 were subsequently referred for ELOVL4 gene (the elongation of very long chain fatty acid 4 gene) testing; in all cases, no causative mutations were identified in the ELOVL4 gene. Three samples from siblings of 2 unrelated affected individuals for whom the causative mutations were confirmed were submitted for predictive ABCA4 testing. Two of these samples were positive for the same 2 mutations present in the respective affected sibling s DNA; the third did not have either mutation observed in the affected sibling. C1Q TUMOR NECROSIS FACTOR RELATED PROTEIN-5 A missense mutation, S163R in the C10 tumor necrosis factor related protein 5 (C1QTNF5/CTRP5) gene, was identified in families with autosomal dominant lateonset retinal degeneration and early-onset abnormal anterior lens zonules. 16,23 Two patients from a large family known to carry the S163R mutation were referred for molecular diagnosis, and the familial mutation was detected in both patients (Table 2). EFEMP1 GENE A missense mutation in EFEMP1 (the epidermal growth factor containing fibulinlike extracellular matrix protein 1 gene) has been implicated in the dominant disease Doyne honeycomb dystrophy or malattia leventinese. 10 Of the 3 samples submitted for diagnostic testing, a causative mutation was identified in 1, thus confirming the clinical diagnosis. In addition, we detected 1 novel potentially neutral polymorphic change in another patient (Table 3). ELOVL4 GENE Mutations in the ELOVL4 gene are responsible for an autosomal dominant Stargardtlike macular degeneration. 11 Among the 23 samples submitted for diagnostic testing, a causative mutation was identified in 1, thereby confirming the clinical diagnosis. RDS GENE Mutations in the RDS gene (the peripherin gene) have been reported to be associated with a broad range of autosomal dominant retinal dystrophies listed in Table 1. 3,6,7 Diagnostic RDS testing was requested for 13 patients. In 3 of the 13 patients, the molecular basis of disease was identified by detecting a change that was previously reported to be a causative mutation, and in a fourth patient, a novel potentially pathogenic change was found. TIMP3 GENE TIMP3 gene (tissue inhibitor of metalloproteinase 3 gene) testing was ordered for 11 patients, all of whom had a differential diagnosis that included Sorsby fundus dystrophy. Sorsby fundus dystrophy is inherited in an autosomal dominant mode and is characterized by lateonset retinal degeneration and choroidal neovascular membrane. It is often misdiagnosed as age-related macu- 254

4 lar degeneration, particularly if there is no report of family history consistent with dominant inheritance. 12,24 Causative mutations were identified in 3 of the 11 patients. One polymorphism was identified in a fourth sample. Five patients underwent predictive testing, and familial mutations were identified in 2 patients. A patient with a family history of late-onset macular dystrophy resembling Sorsby fundus dystrophy showed no TIMP3 mutation. Subsequent to the diagnostic testing, this patient and family members participated in genetic research, and a pathogenic mutation in the RDS gene was identified. 17 VMD2 GENE Mutations in the VMD2 gene (the vitelliform macular dystrophy 2 gene), which encodes the bestrophin protein, have been associated with childhood-onset Best macular degeneration and adult-onset vitelliform macular degeneration. 25 Because these conditions are inherited in an autosomal dominant mode, detection of a single causative mutation can confirm the diagnosis. Molecular diagnosis was requested for 12 patients with diagnoses of autosomal dominant childhood-onset Best macular degeneration (Table 2). The molecular basis for disease was identified in 10 of the 12 patients. A single mutation was identified in 8 of these 10 patients. Two mutations were detected in the ninth and tenth patients; in one case, both mutations were previously reported causative mutations, and in the other case, both were novel. Among the changes observed in the VMD2 gene, 6 were previously reported causative mutations and 5 were potentially pathogenic novel changes (Table 3). In addition, 6 previously described polymorphisms were detected. RS1 GENE Of the genes included in our testing for retinal degenerations, RS1 (the retinoschisin gene) is unique in being the only one responsible for an X-linked disease (ie, X- linked juvenile retinoschisis [XLRS1]). 15 We have provided diagnostic testing for 50 males, carrier testing for 75 females, and 1 predictive test for an at-risk male. Of the 50 diagnostic tests, 39 were positive for a causative mutation. The 1 predictive test ruled out the familial mutation. Of the 75 females tested, 47 proved to be carriers, while the remaining 28 did not carry the familial mutation. CASE REPORT 1: PRETEST EDUCATION AND GENETIC COUNSELING Table 3. Novel Sequence Changes Gene* Nucleotide Change Potentially Pathogenic Changes Amino Acid Change ABCA4 164A C H55P 611G A A204T 868C T R290W 1699G A V567M 1726G C D576H 1817G A G606A 1964T G L725I 2173C A F655C 2297G A G766D 2385C G S795R 2401G A A801T 3076T C F1026L 3138T G L1046W 3414T C L1138P 4256T C M1419T 4535C A P1512H 4849G A V1617M 4870T G W1624G 5026A C T1676P IVS36 3G C Splice site change 5701C A F1900L 5885T A V1962D 6718A G T2240A IVS42 1G A Intronic change RDS 667G C C222S VMD2 174A G Y29C 660T C L191P 738G T L217F 948G A W287X 974A G N296D Potentially Neutral Polymorphic Changes or Changes of Uncertain Significance ABCA4 320C A R107R 1692A G P562P 2823T C C941C 4869C G G1623G 5318C T A1773V 5390T C C1797C IVS15 13T C Intronic change IVS24 46A T Intronic change IVS35 8G A Intronic change IVS40 35A C Intronic change IVS47 29T C Intronic change IVS50 131ins/del Intronic change EFEMP1 399C A G133G RDS IVS3 13C T Intronic change *The genes are described in the second footnote to Table 1. This change was considered a potentially neutral polymorphism after screening controls of similar ethnicity and determining that this change appeared in more than 17% of those screened. The index case was a 10-year-old Caucasian boy whose differential diagnosis included pattern dystrophy, cone dystrophy, cone-rod dystrophy, rod-cone dystrophy, and Stargardt macular degeneration. His ophthalmologist made a referral for ABCA4 diagnostic testing and genetic counseling. The 3-generation family history elicited during the pretest genetic counseling session was negative for ocular disease; there was no known consanguinity. The younger son had been seen by another ophthalmologist; his phenotype differed from his brother s phenotype. The parents hoped for a specific diagnosis and cause of their older son s eye disease and for a determination of whether their younger son was affected with the same disease or a mild unrelated vision problem. The counseling provided the parents the opportunity to discuss the implications of recessive inheritance, develop realistic expectations for the information the test could provide, and prepare for all possible test results. The ABCA4 test result identified 2 previously described mutations in the heterozygous state in both samples; thus, the results were consistent with 255

5 Table 4. Sequence Variations Found in the ABCA4 Gene in Case Report 2* Nucleotide Change IVS10 5del G 5603A T 5682G C 5843C T Effect on Amino Acid This deletion is in a noncoding region. The sequence change alters the amino acid at position 1868, from asparagine to isoleucine. The sequence change does not alter the amino acid, leucine. This sequence change alters the amino acid at position 1948, from proline to leucine. *This table is based on data found in articles by Stone, 18 Maugeri et al, 26 and Rivera et al. 27 the diagnosis of Stargardt macular degeneration in both children. CASE REPORT 2: INCONCLUSIVE TEST RESULT A 38-year-old white man was seen with a chief complaint of progressively worsening vision. Clinical examination and electroretinographic results were consistent with a diagnosis of Stargardt macular degeneration. His ophthalmologist ordered ABCA4 testing. No causative mutations were detected in this individual; however, 4 previously reported polymorphic changes were observed in the heterozygous state (Table 4). Although the molecular basis of disease was not identified, this is not a negative test result (ie, the clinical diagnosis can neither be confirmed nor ruled out based on these results). The test result was inconclusive. COMMENT The most common use of molecular diagnostic information of patients with retinal disease is to confirm a clinical diagnosis. The clinical presentation often was not straightforward, and the differential diagnosis could include several diseases. Molecular diagnostics does not replace the necessary expertise of the ophthalmologist; rather, it adds a new tool to the ophthalmologist s diagnostic arsenal. Molecular testing offers unique advantages and novel challenges. One advantage is that it is available to patients at remote sites by the simple submission of a blood sample and appropriate clinical referral. In addition, once the familial mutation is identified, DNA from blood relatives may be tested for the specific mutation without sequencing the entire gene. Translating knowledge derived from the genetic research literature to the clinical paradigm necessitates considering the applicability to the individual patient. In cases in which the familial mutations are known, results are typically either positive or negative (ie, they confirm or rule out the presence of the known mutations). In contrast, when the familial mutation is not known, the likelihood of detecting the pathogenic mutation can only be estimated. Caution must be exercised in extracting research detection rates for use for the individual patient. In the clinical setting, patients may not match research subjects for a variety of characteristics, including phenotype, family history, and racial and ethnic background. 28 Detection rates in the genetic research literature may be reported as the percentage of subjects in whom any mutation was found. However, in cases of recessive diseases, the report of a single mutated allele does not confirm the diagnosis; thus, the detection rate reported in the research literature may be higher than the rate of confirmation of disease. As illustrated in case 2, when the familial mutation is not known, lack of identification of pathogenic mutations does not rule out the diagnosis. The explanation for why mutations in the gene tested may not be detected could be because of limitations in our knowledge and available technology. Although it is commonly accepted that a single polymorphism does not cause abnormal gene functioning, it is not yet known what effect multiple polymorphisms in the same or different alleles may have on the functioning of the gene. Another consideration is the possibility that gene-gene interaction, whereby a change in another gene in combination with 1 or more of these polymorphisms, would result in disease. 29,30 Typically, sequence alterations that do not change the amino acid are considered to be neutral polymorphic changes; however, there have been rare cases in which a nucleotide substitution that does not change the amino acid has been known to be disease causing. 31 Current methods could fail to identify large deletions, large insertions, or mutations in noncoding regions. Alternatively, the disease may be caused by mutations in another gene or may not have a genetic cause. The concept of an inconclusive result is often counterintuitive to the patient and is an important component of pretest education and counseling. 32 Identifying and addressing the individual patient s expectations before testing can alleviate potential pitfalls when reporting results to the patient. 33 Before testing, providing written consent for DNA testing in conjunction with a face-to-face discussion of concerns and questions and proactively addressing unique concepts in the interpretation of molecular genetic test results promotes patient satisfaction and alleviation of misunderstanding and distress. This necessitates allocation of time and expertise to explain in lay language the scope and limitations of the test, assess clinical relevance and patient expectations, convey results, and answer questions regarding interpretation With more than 100 retinal genes already cloned and the number increasing, one of the hurdles in providing efficient affordable molecular testing is the existing technical limitations. The development of technology that can provide high-throughput mutation detection will afford a significant breakthrough in promoting the practical utility of molecular testing. Microarray chips with known mutations have been used successfully to identify known mutations in patients seen with Stargardt macular degeneration, cone-rod dystrophy, autosomal recessive retinitis pigmentosa, and Leber congenital amaurosis. 9,43,44 A promising development is a sequencing microarray chip developed by Mandal et al 45 that screens 11 genes associated with earlyonset retinal degeneration diseases. These sequencing ar- 256

6 rays allow for simultaneous genotyping of any or all of the 11 genes at one time, and can identify novel mutations and those that have been previously described. This technology also affords the opportunity of investigating the interaction of multiple sequence variations and mutations that may occur in more than 1 gene, thus providing valuable tools in analyzing complex modes of inheritance while increasing productivity and lowering cost. Future molecular testing for ophthalmic diseases may include prenatal applications, molecular-based clinical trials, and genotype-specific treatment options. Indeed, advances in the molecular diagnosis of retinoblastoma have allowed for at least 1 clinical case of preimplantation genetic diagnosis. 46 There are animal models illustrating success in genotype-based treatment of retinal degeneration As future therapies are designed to treat specific genetic ocular diseases, knowledge of the individual patient s genotype will be essential in prescribing the appropriate treatment. Molecular testing will likely become a standard of practice for the ophthalmologist. Because ocular molecular testing is still in its infancy, the ophthalmologist may encounter direct patient requests for testing and will need to determine when to order tests. Clinical molecular diagnostic laboratory personnel, including the laboratory director, the genetic counselor, and the clinical ophthalmic genetic specialist, can be of great value to the ophthalmologist by providing consultation before and after molecular genetic testing. Submitted for Publication: June 30, 2006; final revision received August 30, 2006; accepted August 31, Correspondence: Radha Ayyagari, PhD, W. K. Kellogg Eye Center, University of Michigan, 1000 Wall St, Room 325, Ann Arbor, MI (ayyagari@umich.edu). Author Contributions: Dr Ayyagari had full access to all the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis. Financial Disclosure: None reported. Funding/Support: This study was supported by grants EY11671 (Ms Downs and Dr Richards) and EY13198 (Dr Ayyagari) and core grants EY07003 and EY07060 (Department of Ophthalmology and Visual Sciences, University of Michigan) from the National Institutes of Health; by the Foundation Fighting Blindness (Drs Weleber, Heckenlively, and Ayyagari); and by Research to Prevent Blindness (Dr Ayyagari). Additional Information: Patient fees varied according to the gene tested and whether the familial mutation was previously confirmed. These fees covered a portion of the costs of testing and provision of genetic counseling. Acknowledgment: We thank the physicians and genetic counselors who contacted us to determine if genetic molecular testing was appropriate for their patients and who submitted samples for clinical testing. REFERENCES 1. Heckenlively JR. Retinitis Pigmentosa. Philadelphia, Pa: JB Lippincott Co; Traboulsi E. Genetic Diseases of the Eye. New York, NY: Oxford University Press Inc; Iannaccone A. Genotype-phenotype correlations and differential diagnosis in autosomal dominant macular disease. Doc Ophthalmol. 2001;102: RetNet: retinal information network Web site. /Retnet/. Accessed November 11, Cremers FP, van de Pol DJ, van Driel M, et al. Autosomal recessive retinitis pigmentosa and cone-rod dystrophy caused by splice site mutations in the Stargardt s disease gene ABCR. Hum Mol Genet. 1998;7: Weleber RG, Carr RE, Murphey WH, Sheffield VC, Stone EM. Phenotypic variation including retinitis pigmentosa, pattern dystrophy, and fundus flavimaculatus in a single family with a deletion of codon 153 or 154 of the peripherin/rds gene. Arch Ophthalmol. 1993;111: Kajiwara K, Berson EL, Dryja TP. Digenic retinitis pigmentosa due to mutations at the unlinked peripherin/rds and ROM1 loci. Science. 1994;264: Genetests Web site. Accessed November 11, Jaakson K, Zernant J, Kulm M, et al. Genotyping microarray (gene chip) for the ABCR (ABCA4) gene. Hum Mutat. 2003;22: Stone EM, Lotery AJ, Munier FL, et al. A single EFEMP1 mutation associated with both Malattia Leventinese and Doyne honeycomb retinal dystrophy. Nat Genet. 1999;22: Zhang K, Kniazeva M, Han M, et al. A 5-bp deletion in ELOVL4 is associated with two related forms of autosomal dominant macular dystrophy. Nat Genet. 2001; 27: Weber BH, Vogt G, Pruett RC, Stohr H, Felbor U. Mutations in the tissue inhibitor of metalloproteinases-3 (TIMP3) in patients with Sorsby s fundus dystrophy. Nat Genet. 1994;8: Caldwell GM, Kakuk LE, Griesinger IB, et al. Bestrophin gene mutations in patients with Best vitelliform macular dystrophy. Genomics. 1999;58: Briggs CE, Rucinski D, Rosenfeld PJ, Hirose T, Berson EL, Dryja TP. Mutations in ABCR (ABCA4 ) in patients with Stargardt macular degeneration or cone-rod degeneration. Invest Ophthalmol Vis Sci. 2001;42: Sauer CG, Gehrig A, Warneke-Wittstock R, et al. Positional cloning of the gene associated with X-linked juvenile retinoschisis. Nat Genet. 1997;17: Hayward C, Shu X, Cideciyan AV, et al. Mutation in a short-chain collagen gene, CTRP5, results in extracellular deposit formation in late-onset retinal degeneration: a genetic model for age-related macular degeneration. Hum Mol Genet. 2003; 12: Khani SC, Karoukis AJ, Young JE, et al. Late-onset autosomal dominant macular dystrophy with choroidal neovascularization and nonexudative maculopathy associated with mutation in the RDS gene. Invest Ophthalmol Vis Sci. 2003; 44: Stone EM. Finding and interpreting genetic variations that are important to ophthalmologists. Trans Am Ophthalmol Soc. 2003;101: Retina International scientific newsletter. /sci-news/mutation.htm. Accessed November 11, The human gene mutation database at the Institute of Medical Genetics in Cardiff. Accessed November 11, Single nucleotide polymorphism Web site. Accessed November 11, ACMG. ACMG recommendations for standards for interpretation of sequence variations. Genet Med. 2000;2(5): Ayyagari R, Mandal MN, Karoukis AJ, et al. Late-onset macular degeneration and long anterior lens zonules result from a CTRP5 gene mutation. Invest Ophthalmol Vis Sci. 2005;46: Sorsby A MM, Gardener N. A fundus dystrophy with unusual features. Br J Ophthalmol. 1949;1949: Petrukhin K, Koisti MJ, Bakall B, et al. Identification of the gene responsible for Best macular dystrophy. Nat Genet. 1998;19: Maugeri A, van Driel MA, van de Pol DJ, et al. The 2588G C mutation in the ABCR gene is a mild frequent founder mutation in the Western European population and allows the classification of ABCR mutations in patients with Stargardt disease. Am J Hum Genet. 1999;64: Rivera A, White K, Stohr H, et al. A comprehensive survey of sequence variation in the ABCA4 (ABCR) gene in Stargardt disease and age-related macular degeneration. Am J Hum Genet. 2000;67: Holtzman NA, Murphy PD, Watson MS, Barr PA. Predictive genetic testing: from basic research to clinical practice. Science. 1997;278: Bergren SK, Chen S, Galecki A, Kearney JA. Genetic modifiers affecting severity of epilepsy caused by mutation of sodium channel Scn2a. Mamm Genome. 2005; 16: Slieker MG, Sanders EA, Rijkers GT, Ruven HJ, van der Ent CK. Disease modifying genes in cystic fibrosis. J Cyst Fibros. 2005;4(suppl 2): Eriksson M, Brown WT, Gordon LB, et al. Recurrent de novo point mutations in lamin A cause Hutchinson-Gilford progeria syndrome. Nature. 2003;423: McGovern MM, Benach M, Zinberg R. Interaction of genetic counselors with mo- 257

7 lecular genetic testing laboratories: implications for non-geneticist health care providers. Am J Med Genet A. 2003;119: Bernhardt BA, Geller G, Strauss M, et al. Toward a model informed consent process for BRCA1 testing: a qualitative assessment of women s attitudes. J Genet Couns. 1997;6: Walker AP. The practice of genetic counseling. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley-Liss; 1998: Michie S, Smith JA, Senior V, Marteau TM. Understanding why negative genetic test results sometimes fail to reassure. Am J Med Genet A. 2003;119: Kay E, Kingston H. Feelings associated with being a carrier and characteristics of reproductive decision making in women known to be carriers of X-linked conditions. J Health Psychol. 2002;7: Schuette JL, Bennett RL. Lessons in history: obtaining the family history and constructing a pedigree. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley-Liss; 1998: Baker DL. Interviewing techniques. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley-Liss; 1998: Uhlmann WR. A guide to case management: coordinating genetic testing. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley- Liss; 1998: Uhlmann WR. A guide to case management: communicating results. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley- Liss; 1998: Uhlmann WR. A guide to case management: communicating with other specialists and researchers. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley-Liss; 1998: Ward PA. New and evolving technologies: implementation considerations for genetic counselors. In: Baker DL, Uhlmann WR, eds. A Guide to Genetic Counseling. New York, NY: Wiley-Liss; 1998: Klevering BJ, Yzer S, Rohrschneider K, et al. Microarray-based mutation analysisoftheabca4 (ABCR) gene in autosomal recessive cone-rod dystrophy and retinitis pigmentosa. Eur J Hum Genet. 2004;12: Zernant J, Kulm M, Dharmaraj S, et al. Genotyping microarray (disease chip) for Leber congenital amaurosis: detection of modifier alleles. Invest Ophthalmol Vis Sci. 2005;46: Mandal MN, Heckenlively JR, Burch T, et al. Sequencing arrays for screening multiple genes associated with early-onset human retinal degenerations on a highthroughput platform. Invest Ophthalmol Vis Sci. 2005;46: Girardet A, Hamamah S, Anahory T, et al. First preimplantation genetic diagnosis of hereditary retinoblastoma using informative microsatellite markers. Mol Hum Reprod. 2003;9: Acland GM, Aguirre GD, Ray J, et al. Gene therapy restores vision in a canine model of childhood blindness. Nat Genet. 2001;28: Radu RA, Mata NL, Nusinowitz S, Liu X, Sieving PA, Travis GH. Treatment with isotretinoin inhibits lipofuscin accumulation in a mouse model of recessive Stargardt s macular degeneration. Proc Natl Acad SciUSA. 2003;100: Dinculescu A, Glushakova L, Min SH, Hauswirth WW. Adeno-associated virusvectored gene therapy for retinal disease. Hum Gene Ther. 2005;16: Kiang AS, Palfi A, Ader M, et al. Toward a gene therapy for dominant disease: validation of an RNA interference-based mutation-independent approach. Mol Ther. 2005;12: Preising MN, Heegard S. Recent advances in early-onset severe retinal degeneration: more than just basic research. Trends Mol Med. 2004;10: Ali RR. Prospects for gene therapy. Novartis Found Symp. 2004;255: Pawlyk BS, Smith AJ, Buch PK, et al. Gene replacement therapy rescues photoreceptor degeneration in a murine model of Leber congenital amaurosis lacking RPGRIP. Invest Ophthalmol Vis Sci. 2005;46: Call for Papers Archives of Ophthalmology will publish articles on violence/ human rights and ophthalmology in conjunction with a JAMA theme issue on the same topic in August Manuscripts received by March 1, 2007, will have the best chance for consideration for this theme issue. 258

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