icamp: Cancer biology tutorial II: recent developments in tumor biology, experimental methodology, and reference identification

Size: px
Start display at page:

Download "icamp: Cancer biology tutorial II: recent developments in tumor biology, experimental methodology, and reference identification"

Transcription

1 icamp: Cancer biology tutorial II: recent developments in tumor biology, experimental methodology, and reference identification Stem cells and the environment in the adenoma-carcinoma sequence (Medema, 2011) Anna Konstorum 7/17/12

2 Purpose of tutorial II: we try to answer (or at least introduce the questions): What are cancer stem cells, and how are they 'organized' in tumors? How do microenvironmental interactions impact tumor development? What are some methods that biologists use to better understand cancer in the laboratory? What are the methods that were used to produce the experimental results that we are currently analyzing?

3 Review: what is cancer? Normal cells are subject to signals that dictate whether the cell should divide, differentiate into another cell, or die. Cancer can be defined as a disease in which a group of abnormal cells grow uncontrollably by disregarding the normal rules of cell division.

4 Actually, neither normal nor cancerous tissue is as homogenous as we have shown. Schematic representation of the colon crypt illustrates stem cells residing at the crypt bottom immediately above the Paneth cell compartment. The (red) slowly-dividing immature stem cells divide asymmetrically to yield a (green) population of TA cells and replacement stem cells (red arrows). TA cells gradually commit to differentiation during bipolar migration (yellow arrows). The fully differentiated epithelial cells are represented in green, purple and blue at the crypt-villus junction, and in orange at the base of the crypt. (Pinto and Clevers, 2005)

5 Histology of normal crypt Chemical and immunohistochemical detection of the four principal cell lineages of the small intestine (arrowheads): villusassociated absorptive cells (alkaline phosphatase), Goblet mucus-secreting cells (periodic acid/schiff), enteroendocrine cells (synaptophysin), and Paneth cells (lysozyme) The upper small panels show the entire crypt-villus axis while the lower large panels show magnifications of the crypts. (Pinto and Clevers, 2005)

6 Medema, 2011 Normal, multispecies tissue, is highly regulated via interactions within the tissue and with the microenvironment.

7 Medema, 2011 Current studies implicate the microenvironment in driving tumor progression. Histological sample to the right represents (a)->(b) in diagram above.

8 (a) Normal crypt. (b,c ) A mutation in a stem cell is thought to initiate the premetastatic lesion. Newly mutated cancer stem cells (CSCs) secrete factors to the stroma that 'activate' stromal cells (myofibroblasts) to facilitate division and spread of CSCs (more on this in subsequent slides). CSCs also secrete factors that attract immune cells into the stroma that then promote cancer progression and stromal activation. Activated myofibroblasts produce, among other factors, large amounts of hepatocyte growth factor (HGF), which promotes dedifferentiation.

9 a. (a) Simple schematic of a positive feedback between cancer and stromal cells, Note that there is potential here for a positive feedback loop to be created (Matsumoto, 2006). (b) Experimental result that implicates stromal factors in promoting cancer cell stemness and dedifferentiation: α-sma is a marker for stroma (pink) and β-catenin (brown) is a marker for stem cells. Note that this histological slide of a human colon carcinoma has stronger staining for β-catenin at the border of the tumor and the stroma (Vermeulen, 2010).

10 Towards a quantification of HGF action on cancerous colon. There is now a good amount of evidence that activated stroma secretes HGF near the tumor and causes cells in the tumor to become dedifferentiated, and many of the molecular details of this action are being worked out. Our group wanted to know an important question that falls out from the above studies: how does behavior of the tumor, at the tissue level, change with increased HGF signal? This is an important question as studies on HGF have focused on molecular, cellular, and clinical correlation data, which cannot fully describe the spatio-temporal aspects of HGF action, and how this action coincides with the heterogeneous spatial distribution of tumor cell types.

11 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

12 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

13 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

14 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

15 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

16 Experimental cancer biology: mammalian cell culture. Introduction to animal cell culture (Bjanka, 2009).

17 Experimental cancer biology: tumor spheroids and co-culture. Schematic protocols of tissue preparation (derived from primary brain tumor) for in vitro experimentation.

18 CCIC tumor spheroid growth in increasing [HGF]. Cell line used: primary, 'colon cancer initiating cells' (CCICs). CCICs cultured in ultra-low attachment flasks with DMEM + supplement. Cultured CCICs were trypsinized (to break down cell-cell contacts) and spun down (to remove old media). Single cells were plated in 96 well ultra-low attachment plates with media and with or without HGF at various concentrations. CCICs were images at 10x resolution once each day for 12 days. Spheroid grown in media + 50ng/ml HGF, day 8.

19 CCIC tumor spheroid growth in increasing [HGF]. In upcoming experiments, plan to incorporate markers for cell stemness and differentiation, to directly probe the hypothesis that HGF causes cells at the tumor/host boundary to take on a stem-cell phenotype. Spheroid grown in media + 50ng/ml HGF, day 8. Spheroids on the right have been fixed and stained for GLUT1 (marker of hypoxia, brown) and Ki67 (marker for proliferation). (Vinci et al., 2012)

20 References Pinto D, Clevers H. Wnt, stem cells and cancer in the intestine. Biol Cell Mar;97(3): Review. Medema JP, Vermeulen L. Microenvironmental regulation of stem cells in intestinal homeostasis and cancer. Nature Jun 15;474(7351): doi: /nature Review. "Introduction to animal cell culture" (Bjanka, 2009) %20Tissue%20Culture%20Lecture%202%20combinedBjanka.pdf Corcoran A, De Ridder LI, Del Duca D, Kalala OJ, Lah T, Pilkington GJ, Del Maestro RF. Evolution of the brain tumour spheroid model: transcending current model limitations. Acta Neurochir (Wien) Sep;145(9): Review. Vinci M, Gowan S, Boxall F, Patterson L, Zimmermann M, Court W, Lomas C, Mendiola M, Hardisson D, Eccles SA. Advances in establishment and analysis of three-dimensional tumor spheroid-based functional assays for target validation and drug evaluation. BMC Biol Mar 22;10:29.

Supplemental Figure 1: Lrig1-Apple expression in small intestine. Lrig1-Apple is observed at the crypt base and in insterstial cells of Cajal, but is

Supplemental Figure 1: Lrig1-Apple expression in small intestine. Lrig1-Apple is observed at the crypt base and in insterstial cells of Cajal, but is Supplemental Figure 1: Lrig1-Apple expression in small intestine. Lrig1-Apple is observed at the crypt base and in insterstial cells of Cajal, but is not co-expressed in DCLK1-positive tuft cells. Scale

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION b 350 300 250 200 150 100 50 0 E0 E10 E50 E0 E10 E50 E0 E10 E50 E0 E10 E50 Number of organoids per well 350 300 250 200 150 100 50 0 R0 R50 R100 R500 1st 2nd 3rd Noggin 100 ng/ml Noggin 10 ng/ml Noggin

More information

Summary and Concluding Remarks

Summary and Concluding Remarks Summary and Concluding Remarks Chapter 6 The intestinal epithelium provides an excellent model system for investigating molecular mechanisms regulating cell lineage establishment, stem cell proliferation,

More information

CHAPTER 3. Expression pattern of Wnt signaling components in the adult intestine. Gastroenterology 23: (2005)

CHAPTER 3. Expression pattern of Wnt signaling components in the adult intestine. Gastroenterology 23: (2005) CHAPTER 3 Expression pattern of Wnt signaling components in the adult intestine Gastroenterology 23:1825-1833 (2005) Chapter 3 Expression pattern of Wnt signaling components in the adult intestine Alex

More information

From crypt stem cell to colorectal cancer

From crypt stem cell to colorectal cancer 19 3 2007 6 Chinese Bulletin of Life Sciences Vol. 19, No. 3 Jun., 2007 1004-0374(2007)03-0321-05 ( 510405) Wnt Notch BMP R735.35; R730.21 A From crypt stem cell to colorectal cancer WEN Bin*, CHEN Weiwen

More information

Genotype analysis by Southern blots of nine independent recombinated ES cell clones by

Genotype analysis by Southern blots of nine independent recombinated ES cell clones by Supplemental Figure 1 Selected ES cell clones show a correctly recombined conditional Ngn3 allele Genotype analysis by Southern blots of nine independent recombinated ES cell clones by hybridization with

More information

Supplementary Figure 1: Signaling centers contain few proliferating cells, express p21, and

Supplementary Figure 1: Signaling centers contain few proliferating cells, express p21, and Supplementary Figure 1: Signaling centers contain few proliferating cells, express p21, and exclude YAP from the nucleus. (a) Schematic diagram of an E10.5 mouse embryo. (b,c) Sections at B and C in (a)

More information

Beuling _SupplFig. 1

Beuling _SupplFig. 1 euling _SupplFig. 1 Gata6: F: 5 -GGGTGTGG-3 R: 5 -GTGGTTGT-3 hga: F: 5 -GT-3 R: 5 -TTTTTTTT-3 Gcg: F: 5 -TTGGGTGGTTTG-3 R: 5 -TGGGGTGTTGTGGTG-3 Pyy: F: 5 -GGGGGG-3 R: 5 -GGGGGGTG-3 Muc2: F: 5 -TTGTGTGTG-3

More information

Enterprise Interest Nothing to declare

Enterprise Interest Nothing to declare Enterprise Interest Nothing to declare Update of mixed tumours of the GI tract, the pancreas and the liver Introduction to the concept of mixed tumours and clinical implication Jean-Yves SCOAZEC Surgical

More information

Lactase, sucrase-isomaltase, and carbamoyl phosphate synthase I expression in human intestine van Beers, E.H.

Lactase, sucrase-isomaltase, and carbamoyl phosphate synthase I expression in human intestine van Beers, E.H. UvA-DARE (Digital Academic Repository) Lactase, sucrase-isomaltase, and carbamoyl phosphate synthase I expression in human intestine van Beers, E.H. Link to publication Citation for published version (APA):

More information

CHAPTER 6 SUMMARIZING DISCUSSION

CHAPTER 6 SUMMARIZING DISCUSSION CHAPTER 6 SUMMARIZING DISCUSSION More than 20 years ago the founding member of the Wnt gene family, Wnt-1/Int1, was discovered as a proto-oncogene activated in mammary gland tumors by the mouse mammary

More information

3D-Tissue Microsystems for Tumor Microenvironments Designs for Basic and Translational Research

3D-Tissue Microsystems for Tumor Microenvironments Designs for Basic and Translational Research 3D-Tissue Microsystems for Tumor Microenvironments Designs for Basic and Translational Research Michael Phelan Biostatistics Shared Resource Chao Family Comprehensive Cancer Center UC, Irvine School of

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb3021 Supplementary figure 1 Characterisation of TIMPless fibroblasts. a) Relative gene expression of TIMPs1-4 by real time quantitative PCR (RT-qPCR) in WT or ΔTimp fibroblasts (mean ±

More information

Elaboration of a Multispecies Model of Solid Tumor Growth with Tumor-Host Interactions

Elaboration of a Multispecies Model of Solid Tumor Growth with Tumor-Host Interactions Elaboration of a Multispecies Model of Solid Tumor Growth with Tumor-Host Interactions A. Konstorum, S. A. Sprowl, A. D. Lander, M. L. Waterman and J. S. Lowengrub Abstract There has been increasing evidence

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI:.38/ncb3399 a b c d FSP DAPI 5mm mm 5mm 5mm e Correspond to melanoma in-situ Figure a DCT FSP- f MITF mm mm MlanaA melanoma in-situ DCT 5mm FSP- mm mm mm mm mm g melanoma in-situ MITF MlanaA mm mm

More information

Stem cells in homeostasis and cancer of the gut

Stem cells in homeostasis and cancer of the gut Heijden and Vermeulen Molecular Cancer (2019) 18:66 https://doi.org/10.1186/s12943-019-0962-x REVIEW Stem cells in homeostasis and cancer of the gut Maartje van der Heijden and Louis Vermeulen * Open Access

More information

Cancer Biology Course. Invasion and Metastasis

Cancer Biology Course. Invasion and Metastasis Cancer Biology Course Invasion and Metastasis 2016 Lu-Hai Wang NHRI Cancer metastasis Major problem: main reason for killing cancer patients, without it cancer can be cured or controlled. Challenging questions:

More information

General Structure of Digestive Tract

General Structure of Digestive Tract Dr. Nabil Khouri General Structure of Digestive Tract Common Characteristics: Hollow tube composed of a lumen whose diameter varies. Surrounded by a wall made up of 4 principal layers: Mucosa Epithelial

More information

Supplementary Figure 1: Neuregulin 1 increases the growth of mammary organoids compared to EGF. (a) Mammary epithelial cells were freshly isolated,

Supplementary Figure 1: Neuregulin 1 increases the growth of mammary organoids compared to EGF. (a) Mammary epithelial cells were freshly isolated, 1 2 3 4 5 6 7 8 9 10 Supplementary Figure 1: Neuregulin 1 increases the growth of mammary organoids compared to EGF. (a) Mammary epithelial cells were freshly isolated, embedded in matrigel and exposed

More information

Colonic polyps and colon cancer. Andrew Macpherson Director of Gastroentology University of Bern

Colonic polyps and colon cancer. Andrew Macpherson Director of Gastroentology University of Bern Colonic polyps and colon cancer Andrew Macpherson Director of Gastroentology University of Bern Improtance of the problem of colon cancers - Epidemiology Lifetime risk 5% Incidence/10 5 /annum (US Detroit

More information

Supplemental Data Tamoxifen administration to Vil-Scap- mice.

Supplemental Data Tamoxifen administration to Vil-Scap- mice. Supplemental Data FIGURE S1. Tamoxifen administration to Vil-Scap - mice. In the experiments shown in Fig. 1 to Fig. 5, tamoxifen (2 mg per dose) was dissolved in corn oil and administered by orogastric

More information

Characteristics of Cancer Stem Cells (CSCs)

Characteristics of Cancer Stem Cells (CSCs) GENReports: Market & Tech Analysis Characteristics of Cancer Stem Cells (CSCs) > Enal Razvi, Ph.D. Biotechnology Analyst, Managing Director Select Biosciences, Inc. enal@selectbio.us! Topic,IntroducEon,and,Scope!

More information

Establishment and Analysis of the 3-dimensional (3D) Spheroids Generated from the Nasopharyngeal Carcinoma Cell Line HK1

Establishment and Analysis of the 3-dimensional (3D) Spheroids Generated from the Nasopharyngeal Carcinoma Cell Line HK1 Tropical Life Sciences Research, 27(Supp. 1), 125 130, 2016 Establishment and Analysis of the 3-dimensional (3D) Spheroids Generated from the Nasopharyngeal Carcinoma Cell Line HK1 1 Kalaivani Muniandy,

More information

Targeting the cgmp Pathway to Treat Colorectal Cancer

Targeting the cgmp Pathway to Treat Colorectal Cancer Thomas Jefferson University Jefferson Digital Commons Department of Pharmacology and Experimental Therapeutics Faculty Papers Department of Pharmacology and Experimental Therapeutics 29 Targeting the cgmp

More information

Application Note # MT-111 Concise Interpretation of MALDI Imaging Data by Probabilistic Latent Semantic Analysis (plsa)

Application Note # MT-111 Concise Interpretation of MALDI Imaging Data by Probabilistic Latent Semantic Analysis (plsa) Application Note # MT-111 Concise Interpretation of MALDI Imaging Data by Probabilistic Latent Semantic Analysis (plsa) MALDI imaging datasets can be very information-rich, containing hundreds of mass

More information

CD4 and CD8 T cells show a similar accumulation in the tumor stroma.

CD4 and CD8 T cells show a similar accumulation in the tumor stroma. Fig S1 CD4 Fibronectin EpCM CD8 CD4 and CD8 T cells show a similar accumulation in the tumor stroma. Fluorescently-labeled CD4 (CMFD, green) and CD8 (Hoechst, yellow) T cells were added to a human lung

More information

SSM signature genes are highly expressed in residual scar tissues after preoperative radiotherapy of rectal cancer.

SSM signature genes are highly expressed in residual scar tissues after preoperative radiotherapy of rectal cancer. Supplementary Figure 1 SSM signature genes are highly expressed in residual scar tissues after preoperative radiotherapy of rectal cancer. Scatter plots comparing expression profiles of matched pretreatment

More information

Small intestine. Small intestine

Small intestine. Small intestine General features Tubular organ longest part; 5-6 m most of chemical digestion absorption of nutrients reabsorption of H2O occurs. Two structural features; maximize the lumenal surface area villi microvilli

More information

Luminal Histological Outline and Colonic Adenoma Phenotypes

Luminal Histological Outline and Colonic Adenoma Phenotypes Luminal Histological Outline and Colonic Adenoma Phenotypes CARLOS A. RUBIO Gastrointestinal and Liver Pathology Research Laboratory, Department of Pathology, Karolinska Institute and University Hospital,

More information

The Parathyroid Glands Secrete Parathyroid Hormone, which Regulates Calcium, Magnesium, and Phosphate Ion Levels

The Parathyroid Glands Secrete Parathyroid Hormone, which Regulates Calcium, Magnesium, and Phosphate Ion Levels 17.6 The Parathyroid Glands Secrete Parathyroid Hormone, which Regulates Calcium, Magnesium, and Phosphate Ion Levels Partially embedded in the posterior surface of the lateral lobes of the thyroid gland

More information

Interactions between cancer stem cells and their niche govern metastatic colonization

Interactions between cancer stem cells and their niche govern metastatic colonization Correction Interactions between cancer stem cells and their niche govern metastatic colonization Ilaria Malanchi, Albert Santamaria-Martínez, Evelyn Susanto, Hong Peng, Hans-Anton Lehr, Jean-Francois Delaloye

More information

Layered-IHC (L-IHC): A novel and robust approach to multiplexed immunohistochemistry So many markers and so little tissue

Layered-IHC (L-IHC): A novel and robust approach to multiplexed immunohistochemistry So many markers and so little tissue Page 1 The need for multiplex detection of tissue biomarkers. There is a constant and growing demand for increased biomarker analysis in human tissue specimens. Analysis of tissue biomarkers is key to

More information

Supporting Information

Supporting Information Supporting Information Vaira et al. 10.1073/pnas.0907676107 0h 24h 48h PTEN pathway Expression 0h 24h 48h Time MAP Kinase Signaling Pathway Expression 0h 24h 48h Time Collagen Expression Fig. S1. Differential

More information

Tissues and organs PART 1

Tissues and organs PART 1 Tissues and organs PART 1 Animals and plants are multicellular (made of many cells). Cells become specialised according to their function Tissues: Many cells that perform one or several functions; they

More information

Necrotizing Enterocolitis: The Role of the Immune System

Necrotizing Enterocolitis: The Role of the Immune System Necrotizing Enterocolitis: The Role of the Immune System Patricia Denning, M.D. Associate Professor in Pediatrics Division of Neonatology Emory University School of Medicine What is NEC? What is NEC? Necrotizing

More information

Nature Medicine: doi: /nm.3967

Nature Medicine: doi: /nm.3967 Supplementary Figure 1. Network clustering. (a) Clustering performance as a function of inflation factor. The grey curve shows the median weighted Silhouette widths for varying inflation factors (f [1.6,

More information

Supplementary Figure 1. Double-staining immunofluorescence analysis of invasive colon and breast cancers. Specimens from invasive ductal breast

Supplementary Figure 1. Double-staining immunofluorescence analysis of invasive colon and breast cancers. Specimens from invasive ductal breast Supplementary Figure 1. Double-staining immunofluorescence analysis of invasive colon and breast cancers. Specimens from invasive ductal breast carcinoma (a) and colon adenocarcinoma (b) were staining

More information

Supplemental figure 1. PDGFRα is expressed dominantly by stromal cells surrounding mammary ducts and alveoli. A) IHC staining of PDGFRα in

Supplemental figure 1. PDGFRα is expressed dominantly by stromal cells surrounding mammary ducts and alveoli. A) IHC staining of PDGFRα in Supplemental figure 1. PDGFRα is expressed dominantly by stromal cells surrounding mammary ducts and alveoli. A) IHC staining of PDGFRα in nulliparous (left panel) and InvD6 mouse mammary glands (right

More information

A263 A352 A204. Pan CK. pstat STAT3 pstat3 STAT3 pstat3. Columns Columns 1-6 Positive control. Omentum. Rectosigmoid A195.

A263 A352 A204. Pan CK. pstat STAT3 pstat3 STAT3 pstat3. Columns Columns 1-6 Positive control. Omentum. Rectosigmoid A195. pstat3 75 Pan CK A A263 A352 A24 B Columns 1-6 Positive control A195 A22 A24 A183 Rectal Nodule STAT3 pstat3 STAT3 pstat3 Columns 7-12 Omentum Rectosigmoid Left Ovary Right Ovary Omentum Uterus Uterus

More information

Histopathology: Cervical HPV and neoplasia

Histopathology: Cervical HPV and neoplasia Histopathology: Cervical HPV and neoplasia These presentations are to help you identify basic histopathological features. They do not contain the additional factual information that you need to learn about

More information

Interpreting Therapeutic Response on Immune Cell Number and Spatial Distribution within the Tumor Microenvironment. Lorcan Sherry, CSO OracleBio

Interpreting Therapeutic Response on Immune Cell Number and Spatial Distribution within the Tumor Microenvironment. Lorcan Sherry, CSO OracleBio Interpreting Therapeutic Response on Immune Cell Number and Spatial Distribution within the Tumor Microenvironment Lorcan Sherry, CSO OracleBio Company Overview OracleBio is a specialised CRO providing

More information

Cancer Stem Cells from Colorectal Cancer Cell Lines. Walter Bodmer Weatherall Institute of Molecular Medicine Oxford University

Cancer Stem Cells from Colorectal Cancer Cell Lines. Walter Bodmer Weatherall Institute of Molecular Medicine Oxford University Cancer Stem Cells from Colorectal Cancer Cell Lines Walter Bodmer Weatherall Institute of Molecular Medicine Oxford University Fully differentiated cells: columnar goblet enteroendocrine Myofibroblasts

More information

INTRODUCTION. This material is quoted from below PDF and modified.

INTRODUCTION. This material is quoted from below PDF and modified. INTRODUCTION While drug response profiling of cancer cells in two-dimensional culture has been a mainstay of predictive biomarker discovery and anti-cancer drug development, there are aspects of tumor

More information

ILC1 and ILC3 isolation and culture Following cell sorting, we confirmed that the recovered cells belonged to the ILC1, ILC2 and

ILC1 and ILC3 isolation and culture Following cell sorting, we confirmed that the recovered cells belonged to the ILC1, ILC2 and Supplementary Methods and isolation and culture Following cell sorting, we confirmed that the recovered cells belonged to the, ILC2 and subsets. For this purpose we performed intracellular flow cytometry

More information

LYMPH GLAND. By : Group 1

LYMPH GLAND. By : Group 1 LYMPH GLAND By : Group 1 ANATOMY LYMPH NODE Lymphatic Organs Red bone marrow Thymus gland Lymph nodes Lymph nodules Spleen Primary organs Secondary organs Lymph Nodes Firm, smooth-surfaced, bean-shaped

More information

Cancer and sornat ic evolution

Cancer and sornat ic evolution Chapter 1 Cancer and sornat ic evolution 1.1 What is cancer? The development and healthy life of a human being requires the cooperation of more than ten million cells for the good of the organism. This

More information

Disorders of Cell Growth & Neoplasia

Disorders of Cell Growth & Neoplasia General Pathology VPM 152 Disorders of Cell Growth & Neoplasia Lecture 3 Rate of growth, local invasion, and metastasis. Molecular basis of cancer (normal cell-cycle and cellular proliferation). Enrique

More information

Bone-stromal cells up-regulate tumourigenic markers in a tumour-stromal 3D model of prostate cancer

Bone-stromal cells up-regulate tumourigenic markers in a tumour-stromal 3D model of prostate cancer Windus et al. Molecular Cancer 2013, 12:112 RESEARCH Open Access Bone-stromal cells up-regulate tumourigenic markers in a tumour-stromal 3D model of prostate cancer Louisa CE Windus, Tristan T Glover and

More information

Modelling multiscale aspects of colorectal cancer

Modelling multiscale aspects of colorectal cancer Modelling multiscale aspects of colorectal cancer Ingeborg M.M. van Leeuwen*, Helen M. Byrne*, Matthew D. Johnston''', Carina M. Edwards''', S. Jonathan Chapman**, Waher F. Bodmer^ and Philip K. Maini

More information

Supplementary Figure 1.

Supplementary Figure 1. Supplementary Figure 1. Transduction of adipocytes after intra-ewat administration of AAV vectors. A: Immunostaining against GFP (green) in sections of ewat two weeks after the intra-ewat administration

More information

PBS Class #2 Introduction to the Immune System part II Suggested reading: Abbas, pgs , 27-30

PBS Class #2 Introduction to the Immune System part II Suggested reading: Abbas, pgs , 27-30 PBS 803 - Class #2 Introduction to the Immune System part II Suggested reading: Abbas, pgs. 15-25, 27-30 Learning Objectives Compare and contrast the maturation of B and T lymphocytes Compare and contrast

More information

Nature Biotechnology: doi: /nbt Supplementary Figure 1

Nature Biotechnology: doi: /nbt Supplementary Figure 1 Supplementary Figure 1 Overview of the transplant procedure and supplementary data to Figure 1. a. Under isofluorane anesthesia, the lumen of the colon is washed by a gentle PBS enema. b. Using a p200

More information

Carcinogenesis in IBD

Carcinogenesis in IBD Oxford Inflammatory Bowel Disease MasterClass Carcinogenesis in IBD Dr Simon Leedham, Oxford, UK Oxford Inflammatory Bowel Disease MasterClass Carcinogenesis in Inflammatory Bowel Disease Dr Simon Leedham

More information

Supplemental Data. Wnt/β-Catenin Signaling in Mesenchymal Progenitors. Controls Osteoblast and Chondrocyte

Supplemental Data. Wnt/β-Catenin Signaling in Mesenchymal Progenitors. Controls Osteoblast and Chondrocyte Supplemental Data Wnt/β-Catenin Signaling in Mesenchymal Progenitors Controls Osteoblast and Chondrocyte Differentiation during Vertebrate Skeletogenesis Timothy F. Day, Xizhi Guo, Lisa Garrett-Beal, and

More information

Supplementary Information

Supplementary Information Supplementary Information Figure S1: Follicular melanocytes in the wound peripheral area migrate to the epidermis in response to wounding stimuli. Dorsal skin of Trp2-LacZ mice stained with X-gal and analyzed

More information

T H E J O U R N A L O F C E L L B I O L O G Y

T H E J O U R N A L O F C E L L B I O L O G Y Supplemental material Brooks and Wallingford, http://www.jcb.org/cgi/content/full/jcb.201204072/dc1 T H E J O U R N A L O F C E L L B I O L O G Y Figure S1. Quantification of ciliary compartments in control

More information

Immature organoids appear after hours.

Immature organoids appear after hours. THE ESSENTIALS OF LIFE SCIENCE RESEARCH GLOBALLY DELIVERED Allison Ruchinskas, B.S., and James Clinton, Ph.D. ATCC Cell Systems, Gaithersburg, MD INTRODUCTION Figure 1. Mouse small intestinal organoid

More information

DIGESTIVE TRACT ESOPHAGUS

DIGESTIVE TRACT ESOPHAGUS DIGESTIVE TRACT From the lower esophagus to the lower rectum four fundamental layers comprise the wall of the digestive tube: mucosa, submucosa, muscularis propria (externa), and adventitia or serosa (see

More information

Small Intestine, Large Intestine and anal cannel

Small Intestine, Large Intestine and anal cannel Small Intestine, Large Intestine and anal cannel 32409 Small intestine Large intestine Small intestine General Structure of the Digestive Tract rat 32409 Epithelium with goblet cells and absorptive cells

More information

Nature Neuroscience: doi: /nn Supplementary Figure 1. MADM labeling of thalamic clones.

Nature Neuroscience: doi: /nn Supplementary Figure 1. MADM labeling of thalamic clones. Supplementary Figure 1 MADM labeling of thalamic clones. (a) Confocal images of an E12 Nestin-CreERT2;Ai9-tdTomato brain treated with TM at E10 and stained for BLBP (green), a radial glial progenitor-specific

More information

Cancer and Oncogenes Bioscience in the 21 st Century. Linda Lowe-Krentz

Cancer and Oncogenes Bioscience in the 21 st Century. Linda Lowe-Krentz Cancer and Oncogenes Bioscience in the 21 st Century Linda Lowe-Krentz December 1, 2010 Just a Few Numbers Becoming Cancer Genetic Defects Drugs Our friends and family 25 More mutations as 20 you get older

More information

The Wnt target MASH-2 regulates expression of the putative intestinal specific stemcell markers Sox4 and Sfrp5.

The Wnt target MASH-2 regulates expression of the putative intestinal specific stemcell markers Sox4 and Sfrp5. The Wnt target MASH-2 regulates expression of the putative intestinal specific stemcell markers Sox4 and Sfrp5. Submitted for publication: Irma M. Oving *, Marielle E. van Gijn *, Johan H. van Es, Marc

More information

Dr Nadine Gravett School of Anatomical Sciences Room 2B10B

Dr Nadine Gravett School of Anatomical Sciences Room 2B10B Dr Nadine Gravett School of Anatomical Sciences Room 2B10B Nadine.Gravett@wits.ac.za Oral cavity Mechanical breakdown Formation of bolus Oesophagus Conduit from mouth to stomach Stomach Digestion Temporary

More information

Supplementary Figure 1: Hsp60 / IEC mice are embryonically lethal (A) Light microscopic pictures show mouse embryos at developmental stage E12.

Supplementary Figure 1: Hsp60 / IEC mice are embryonically lethal (A) Light microscopic pictures show mouse embryos at developmental stage E12. Supplementary Figure 1: Hsp60 / IEC mice are embryonically lethal (A) Light microscopic pictures show mouse embryos at developmental stage E12.5 and E13.5 prepared from uteri of dams and subsequently genotyped.

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1 Kif1a RNAi effect on basal progenitor differentiation Related to Figure 2. Representative confocal images of the VZ and SVZ of rat cortices transfected at E16 with scrambled or Kif1a

More information

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable Supplementary Figure 1. Frameshift (FS) mutation in UVRAG. (a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable A 10 DNA repeat, generating a premature stop codon

More information

Supplemental Figure 1. Intracranial transduction of a modified ptomo lentiviral vector in the mouse

Supplemental Figure 1. Intracranial transduction of a modified ptomo lentiviral vector in the mouse Supplemental figure legends Supplemental Figure 1. Intracranial transduction of a modified ptomo lentiviral vector in the mouse hippocampus targets GFAP-positive but not NeuN-positive cells. (A) Stereotaxic

More information

Update on 2015 WHO Classification of Lung Adenocarcinoma 1/3/ Mayo Foundation for Medical Education and Research. All rights reserved.

Update on 2015 WHO Classification of Lung Adenocarcinoma 1/3/ Mayo Foundation for Medical Education and Research. All rights reserved. 1 Our speaker for this program is Dr. Anja Roden, an associate professor of Laboratory Medicine and Pathology at Mayo Clinic as well as consultant in the Anatomic Pathology Laboratory and co-director of

More information

Supplementary Information

Supplementary Information Supplementary Information Title Degeneration and impaired regeneration of gray matter oligodendrocytes in amyotrophic lateral sclerosis Authors Shin H. Kang, Ying Li, Masahiro Fukaya, Ileana Lorenzini,

More information

SUPPLEMENTARY FIGURES

SUPPLEMENTARY FIGURES SUPPLEMENTARY FIGURES 1 2 3 4 SUPPLEMENTARY TABLES Supplementary Table S1. Brain Tumors used in the study Code Tumor Classification Age Gender HuTuP51 Glioblastoma 57 Male HuTuP52 Glioblastoma 53 Male

More information

Supplemental Experimental Procedures

Supplemental Experimental Procedures Cell Stem Cell, Volume 2 Supplemental Data A Temporal Switch from Notch to Wnt Signaling in Muscle Stem Cells Is Necessary for Normal Adult Myogenesis Andrew S. Brack, Irina M. Conboy, Michael J. Conboy,

More information

SAM PROVIDER TOOLKIT

SAM PROVIDER TOOLKIT THE AMERICAN BOARD OF PATHOLOGY Maintenance of Certification (MOC) Program SAM PROVIDER TOOLKIT Developing Self-Assessment Modules (SAMs) www.abpath.org The American Board of Pathology (ABP) approves educational

More information

[2] [1] [2] (c) In the lungs, goblet cells secrete mucus. The mucus is then moved by cilia.

[2] [1] [2] (c) In the lungs, goblet cells secrete mucus. The mucus is then moved by cilia. 1 (a) (i) Explain what is meant by the term tissue.... [2] Name one type of epithelial tissue found in the lungs.... [1] (b) Explain why the lungs can be considered to be an organ............ [2] (c) In

More information

Supplemental Table 1. Primers used for RT-PCR analysis of inflammatory cytokines Gene Primer Sequence

Supplemental Table 1. Primers used for RT-PCR analysis of inflammatory cytokines Gene Primer Sequence Supplemental Table 1. Primers used for RT-PCR analysis of inflammatory cytokines Gene Primer Sequence IL-1α Forward primer 5 -CAAGATGGCCAAAGTTCGTGAC-3' Reverse primer 5 -GTCTCATGAAGTGAGCCATAGC-3 IL-1β

More information

The Digestive System

The Digestive System The Digestive System s Big Book of Handouts Digestion and nutrition Specific Learning outcomes B11-2-01: Identify major structures and functions of the human digestive system from a diagram, model, or

More information

1 + denotes a higher variable value for the deletion or depletion than the control scenario; - denotes a lower value.

1 + denotes a higher variable value for the deletion or depletion than the control scenario; - denotes a lower value. Table S1. Significant changes in granuloma variables at 200 days post-infection for deletion and depletion of combinations of two individual TNF activities versus the baseline control scenario 1. Sample

More information

SUPPLEMENTARY FIGURE LEGENDS

SUPPLEMENTARY FIGURE LEGENDS SUPPLEMENTARY FIGURE LEGENDS Supplementary Figure 1. Hippocampal sections from new-born Pten+/+ and PtenFV/FV pups were stained with haematoxylin and eosin (H&E) and were imaged at (a) low and (b) high

More information

Liver Cancer. Su Jong Yu, M.D. Department of Internal Medicine, Liver Research Institute, Seoul National University College of Medicine

Liver Cancer. Su Jong Yu, M.D. Department of Internal Medicine, Liver Research Institute, Seoul National University College of Medicine Liver Cancer Su Jong Yu, M.D. Department of Internal Medicine, Liver Research Institute, Seoul National University College of Medicine Primary Liver Cancer Hepatocellular carcinoma (HCC) : > 80% Derived

More information

Analysis on the mechanism of reduced nephron number and the pathological progression of chronic renal failure in Astrin deficient rats

Analysis on the mechanism of reduced nephron number and the pathological progression of chronic renal failure in Astrin deficient rats Analysis on the mechanism of reduced nephron number and the pathological progression of chronic renal failure in Astrin deficient rats Summary of Doctoral Thesis Hidenori Yasuda Graduate School of Veterinary

More information

Four Types of Vertebrate Tissue

Four Types of Vertebrate Tissue BIO 121 Molecular Cell Biology Lecture Section IV A. Cells in the Context of Tissue, Organ and Organismal Architecture B. Wound Healing Four Types of Vertebrate Tissue 1.Epithelium 2.Connective Tissue

More information

- is a common disease - 1 person in 3 can expect to contract cancer at some stage in their life -1 person in 5 can expect to die from it

- is a common disease - 1 person in 3 can expect to contract cancer at some stage in their life -1 person in 5 can expect to die from it MBB157 Dr D Mangnall The Molecular Basis of Disease CANCER Lecture 1 One of the simpler (and better) definitions of cancer comes from the American Cancer Society, who define cancer as; 'Cancer is a group

More information

The Hot Topic for today is a biopsy from a 58-year-old woman who had worrisome mammographic calcifications on screening.

The Hot Topic for today is a biopsy from a 58-year-old woman who had worrisome mammographic calcifications on screening. The Hot Topic for today is a biopsy from a 58-year-old woman who had worrisome mammographic calcifications on screening. 1 My name is Dan Visscher; I am a consultant in the Division of Anatomic Pathology

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2566 Figure S1 CDKL5 protein expression pattern and localization in mouse brain. (a) Multiple-tissue western blot from a postnatal day (P) 21 mouse probed with an antibody against CDKL5.

More information

Introduction. Introduction

Introduction. Introduction Introduction We are leveraging genome sequencing data from The Cancer Genome Atlas (TCGA) to more accurately define mutated and stable genes and dysregulated metabolic pathways in solid tumors. These efforts

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2697 Figure S1 Cytokeratin 5 is a specific marker for basal and intermediate cells in all mouse prostate lobes. (a) Immunofluorescence staining showing co-localization of YFP with p63 in

More information

Supporting Information online

Supporting Information online Supporting Information online THE RIVER BLINDNESS DRUG IVERMECTIN AND RELATED MACROCYCLIC LACTONES INHIBIT WNT-TCF PATHWAY RESPONSES IN HUMAN CANCER Alice Melotti, Christophe Mas, Monika Kuciak, Aiala

More information

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1 Supplementary Figure 1 Design of isolated protein and RNC constructs, and homogeneity of purified RNCs. (a) Schematic depicting the design and nomenclature used for all the isolated proteins and RNCs used

More information

GFP/Iba1/GFAP. Brain. Liver. Kidney. Lung. Hoechst/Iba1/TLR9!

GFP/Iba1/GFAP. Brain. Liver. Kidney. Lung. Hoechst/Iba1/TLR9! Supplementary information a +KA Relative expression d! Tlr9 5!! 5! NSC Neuron Astrocyte Microglia! 5! Tlr7!!!! NSC Neuron Astrocyte! GFP/Sβ/! Iba/Hoechst Microglia e Hoechst/Iba/TLR9! GFP/Iba/GFAP f Brain

More information

Should novel molecular therapies replace old knowledge of clinical tumor biology?

Should novel molecular therapies replace old knowledge of clinical tumor biology? Should novel molecular therapies replace old knowledge of clinical tumor biology? Danai Daliani, M.D. Director, 1 st Oncology Clinic Euroclinic of Athens Cancer Treatments Localized disease Surgery XRT

More information

Alan G. Casson FRCSC Professor of Surgery & VP Integrated Health Services University of Saskatchewan & Saskatoon Health Region

Alan G. Casson FRCSC Professor of Surgery & VP Integrated Health Services University of Saskatchewan & Saskatoon Health Region Identification and Characterization of Stem-like Cells in Human Esophageal Adenocarcinoma and Normal Epithelial Cell Lines No disclosures / conflict of interest Alan G. Casson FRCSC Professor of Surgery

More information

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14-

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14- 1 Supplemental Figure Legends Figure S1. Mammary tumors of ErbB2 KI mice with 14-3-3σ ablation have elevated ErbB2 transcript levels and cell proliferation (A) PCR primers (arrows) designed to distinguish

More information

arxiv: v1 [q-bio.cb] 5 Nov 2014

arxiv: v1 [q-bio.cb] 5 Nov 2014 Replicator Dynamics of of Cancer Stem Cell; Selection in the Presence of Differentiation and Plasticity arxiv:1411.1399v1 [q-bio.cb] 5 Nov 2014 Kamran Kaveh 1, Mohammad Kohandel 1,2, Siv Sivaloganathan

More information

Terahertz reflectometry imaging for low and high grade gliomas

Terahertz reflectometry imaging for low and high grade gliomas Terahertz reflectometry imaging for low and high grade gliomas Young Bin Ji 1,9, Seung Jae Oh 1,9, Seok-Gu Kang 2,9, Jung Heo 3,9, Sang-Hoon Kim 1,4, Yuna Choi 1, Seungri Song 3, Hye Young Son 5, Se Hoon

More information

Introductory Histology Tutorial I

Introductory Histology Tutorial I Introductory Histology Tutorial I Epithelial Tissues Human Anatomy & Physiology I Assembled by Stephen Shoemake {Click mouse to advance} NAVIGATION = returns you to the previous slide. = returns you to

More information

Basic Histology. By Mrs. Bailey

Basic Histology. By Mrs. Bailey Basic Histology By Mrs. Bailey Primary Tissues 1. Epithelial Tissue 2. Connective Tissue 3. Muscle Tissue 4. Nervous Tissue Very cellular Supported by underlying connective tissue Epithelial & connective

More information

[A RESEARCH COORDINATOR S GUIDE]

[A RESEARCH COORDINATOR S GUIDE] 2013 COLORECTAL SURGERY GROUP Dr. Carl J. Brown Dr. Ahmer A. Karimuddin Dr. P. Terry Phang Dr. Manoj J. Raval Authored by Jennifer Lee A cartoon about colonoscopies. 1 [A RESEARCH COORDINATOR S GUIDE]

More information

T H E J O U R N A L O F C E L L B I O L O G Y

T H E J O U R N A L O F C E L L B I O L O G Y Supplemental material Díaz et al., http://www.jcb.org/cgi/content/full/jcb.201209151/dc1 T H E J O U R N A L O F C E L L B I O L O G Y Figure S1. Hypoxia induces invadopodia formation in different epithelial

More information

Mathematical biology From individual cell behavior to biological growth and form

Mathematical biology From individual cell behavior to biological growth and form Mathematical biology From individual cell behavior to biological growth and form Lecture 8: Multiscale models Roeland Merks (1,2) (1) Centrum Wiskunde & Informatica, Amsterdam (2) Mathematical Institute,

More information

594 Lewin, Weinstein, and Riddell s Gastrointestinal Pathology and Its Clinical Implications

594 Lewin, Weinstein, and Riddell s Gastrointestinal Pathology and Its Clinical Implications 594 Lewin, Weinstein, and Riddell s Gastrointestinal Pathology and Its Clinical Implications Figure 13-20. Stages in the natural history of H. pylori. Biopsies from the antrum are on the left and the oxyntic

More information

Chugai Succeeds in Establishing Stable Cell Lines of Cancer Stem Cell for the First Time

Chugai Succeeds in Establishing Stable Cell Lines of Cancer Stem Cell for the First Time Chugai Succeeds in Establishing Stable Cell Lines of Cancer Stem Cell for the First Time - A Step Forward in Elucidating the Mechanisms of Recurrence / Metastasis and Drug Resistance of Cancer and in the

More information