Untargeted strategy for identification of Toxic Chemicals in OSPW

Size: px
Start display at page:

Download "Untargeted strategy for identification of Toxic Chemicals in OSPW"

Transcription

1 Untargeted strategy for identification of Toxic Chemicals in OSPW ---- oxidative stress and PPARG agonistic activity in OSPW Jianxian Sun, Hui Peng, Hattan Al Harbi, John P. Giesy, Steve Wiseman Oct 6, 2015, University of Saskatchewan

2 What is OSPW Oil Sands Process-Affected Water (OSPW) is produced during the surface mining of oil sands in Alberta, The volume of OSPW is currently stored in tailings is greater than 1 billion m 3 PNAS, 2010, Alberta Energy. Alberta Government

3 OSPW: A Complex Mixture of Dissolved Organics Complex mixture of chemicals Uncharacterized compound Unknown mechanism of toxicity How to Identify causative chemicals in OPSW? O x +/- SO x +/- NO x +/- Chemicals Thousands of dissolved organic compounds? Toxicity Acute toxicity; Deformity; Nuclear receptors; Endocrine disruption; Immune toxicity; Oxidative stress

4 Methods to Identify Causative Chemicals Unknown protein target Known protein Target Effect-Directed Analysis (EDA) Pull down system Fractionation of Active Fractions Chemical Analysis Compare Effects in Bioassay Identification of Active Chemicals

5 Case 1: Oxidative Stress (no protein target) Water Research, 2012, Comparative Biochemistry and Physiology, 2013, Oxidative stress is the production and accumulation of free radicals. Induction of oxidative stress in fathead minnow by OSPW have been reported There are multiple pathways to induce ROS with no certain protein targets.

6 EDA: Chemical Analysis and Bioassay Chemical Analysis: High-Resolution Mass Spectrometry Bioassay: NRF2 Luciferase Reporter System (High Throughput)

7 1 st Dimension Fractionation OSPW HLB HLB 100% Hex Hex/DCM (5:1) Hex/DCM (1:1) 100% DCM 100% MeOH F 1 F 2 F 3 F 4 F 5 Polarity Dissolved organic phase of was separated into 5 fractions based on polarity by use of HLB columns. Total extract created by pooling of samples.

8 NRF2 Activity HLB 4 *** F 1 F 2 F 3 F 4 F 5 TE 3 *** *** Fold Change 2 ** * ** *** *** ** Ctrl tbhq Oxidative stress responses of these five fractions were validated in vivo (medaka)

9 Reduced Responses by Co-exposure with GSH Fold-change *** *** ** tbhq tbhq+gsh F2 F2+GSH Fold-change *** *** *** tbhq tbhq+gsh TE TE+GSH 0 Ctrl tbhq Ctrl tbhq GSH is an anti-oxidant; Organic chemicals in OSPW cause ROS production

10 Peaks Untargeted Mass Spec Analysis positive negative Total peaks: in positive, in negative F1 F2 F3 F4 F5 Greater than 10,000 peaks detected in 5 fractions Many peaks were specifically eluted in F2, which may cause its greater potency. Potential causative chemicals were narrowed in 1,000 chemicals from 10,000 compounds ratio to max positive F1 F2 F3 F4 F5 ratio to max negative F4 F1 F5 F2 F peak ID peak ID

11 2 nd Dimension HPLC Fractionation OSPW HLB HLB 100% Hex Hex/DCM (5:1) Hex/DCM (1:1) 100% DCM 100% MeOH F 1 F 2 F 3 F 4 F 5 HPLC F2-1, F2-2, F2-3 F2-60 Orbitrap NRF2 System Effective Chemicals

12 NRF2 Activity of 60 HPLC fractions * ** * ** Fold Change 1.2 * * * Ctrl Working on chemical analysis

13 Summary of EDA method Effect-Directed Analysis (EDA) Chemical Analysis Fractionation of Active Fractions Compare Effects in Bioassay Identification of Active Chemicals EDA is useful to narrow down causative chemicals and to identify active chemicals; Needs a lot of fractionation and chemical analysis work. It is tricky to identify the causative chemicals from complex samples

14 Case 2: PPARɣ Activation (known protein target) PPARs regulate intracellular lipid flux and adipocyte proliferation and differentiation. PPARγ ligands may promote development of obesity. Activated by structurally diverse ligands

15 80 PPARɣ Activation - Luciferase Reporter Gene Assay Human PPAR-G cell reporter system TE PPAR response Rosiglitazone (nm) Fractions

16 PPARɣ mediated adipogenesis in 3T3-L1 At low concentrations of OSPW (0.1, 0.3 ), accumulation of lipids was observed. At higher concentrations (1, 3 ), lipid droplet size was reduced but level was increased.

17 Ligand Identification: PPARɣ Pull-Down Assay Negative control OSPW Pull-down Competitive pull-down His-PPARɣ Putative ligands Nonspecific binding Rosiglitazone Interfering compounds Magnetic beads intensity mz

18 Positive control: MTX-DHFR Ratio 10 MTX H 2 N N NH 2 N N N Peak ID N H O N OH O O OH

19 Profile of Compounds from Different Groups

20 Compounds Detected as PPARɣ Ligands Negative ion mode Positive ion mode 20 compounds in negative ion mode and 44 compounds in positive ion mode were detected as potential PPARɣ ligands

21 Conclusions and Perspectives Pull down system is a useful method for identifying causative chemicals from complex environmental matrix OSPW can cause oxidative stress, we are still working on identification of causative chemicals PPARɣ is sensitive target of OSPW organic chemicals, and multiple ligands were identified

22 Acknowledgements

23 Thank you!

24 Validation in 3T3-L1 Cell Line The mouse embryonic fibroblast cell line 3T3-L1 is a favored model for metabolism and obesity research, because the cells can be chemically induced to differentiate into adipocytes. Induce for 2 days 10 ug/ml insulin 1 um DEX 0.5 mm MIX Exposure for 8 days 10 ug/ml insulin OSPW Red Oil O staining of lipids

25 Keap 1-NRF2 Under normal conditions, Nrf2 is constantly ubiquitinated through Keap1 and degraded in the proteasome. Following Exposure to electrophiles or oxidative stress, Keap1 is inactivated. Stabilized Nrf2 accumulates in the nucleus and activates many cytoprotective genes. Yoichiro et al., Frontiers in Oncology

26 in vivo: Medaka larvae Gene Expression Fold-change Lipid Hydroperoxide (LPO) ** ** 0 Ctrl tbhq F1 F2 F5 Oxidative stress related genes were induced in F2 group; F2 exposure significant increased concentrations of LPO

27 Wnt-pathway

28 PPARG-Wnt pathway

29 Peak Detection and Match Relative Abundance Computation: rt: min Intensity: 1.16E6 NL: 1.16E Relative Abundance NL: 4.28E4 Computation: rt: 2.42 min Intensity: 4.28E4 Peaks Time (min) positive negative Total peaks: in positive, in negative Time (min) Intensity cutoff: 1E4 Greater than 10,000 peaks detected in 5 fractions Rank order of peak abundance F1 > F3 > F4 > F2 > F5 0 F1 F2 F3 F4 F5

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi: 1.138/nature7221 Brown fat selective genes 12 1 Control Q-RT-PCR (% of Control) 8 6 4 2 Ntrk3 Cox7a1 Cox8b Cox5b ATPase b2 ATPase f1a1 Sirt3 ERRα Elovl3/Cig3 PPARα Zic1 Supplementary Figure S1. stimulates

More information

Prof. Jean-Pierre Lepoittevin University of Strasbourg, France SCCS WG on methodology Luxemburg, July 1st 2015

Prof. Jean-Pierre Lepoittevin University of Strasbourg, France SCCS WG on methodology Luxemburg, July 1st 2015 Potency classification of skin sensitizers: development and use of in vitro methods Prof. Jean-Pierre Lepoittevin University of Strasbourg, France SCCS WG on methodology Luxemburg, July 1st 2015 Research

More information

Identification of Novel Brominated Disinfection By-Products of Concern in Drinking Water by Use of DIPIC-Frag Untargeted Screening

Identification of Novel Brominated Disinfection By-Products of Concern in Drinking Water by Use of DIPIC-Frag Untargeted Screening Identification of Novel Brominated Disinfection By-Products of Concern in Drinking Water by Use of DIPIC-Frag Untargeted Screening Tena Watts November 9, 2016 Hui Peng, Paul D. Jones & John P. Giesy Title

More information

SUPPLEMENTARY DATA. Materials and Methods

SUPPLEMENTARY DATA. Materials and Methods SUPPLEMENTARY DATA Materials and Methods HPLC-UV of phospholipid classes and HETE isomer determination. Fractionation of platelet lipid classes was undertaken on a Spherisorb S5W 150 x 4.6 mm column (Waters

More information

Phospholipid characterization by a TQ-MS data based identification scheme

Phospholipid characterization by a TQ-MS data based identification scheme P-CN1716E Phospholipid characterization by a TQ-MS data based identification scheme ASMS 2017 MP-406 Tsuyoshi Nakanishi 1, Masaki Yamada 1, Ningombam Sanjib Meitei 2, 3 1 Shimadzu Corporation, Kyoto, Japan,

More information

GdR Phycotox. J. Alarcan, E. Dubreil, L. Le Hégarat, D. Hurtaud-Pessel, V. Fessard

GdR Phycotox. J. Alarcan, E. Dubreil, L. Le Hégarat, D. Hurtaud-Pessel, V. Fessard GdR Phycotox In vitro investigation on the human metabolism of lipophilic phycotoxins PT-2 and SP-1 using liquid chromatography hyphenated with high resolution Orbitrap mass spectrometry J. Alarcan, E.

More information

Shotgun Proteomics MS/MS. Protein Mixture. proteolysis. Peptide Mixture. Time. Abundance. Abundance. m/z. Abundance. m/z 2. Abundance.

Shotgun Proteomics MS/MS. Protein Mixture. proteolysis. Peptide Mixture. Time. Abundance. Abundance. m/z. Abundance. m/z 2. Abundance. Abundance Abundance Abundance Abundance Abundance Shotgun Proteomics Protein Mixture 1 2 3 MS/MS proteolysis m/z 2 3 Time µlc m/z MS 1 m/z Peptide Mixture m/z Block Diagram of a Mass Spectrometer Sample

More information

LOCALISATION, IDENTIFICATION AND SEPARATION OF MOLECULES. Gilles Frache Materials Characterization Day October 14 th 2016

LOCALISATION, IDENTIFICATION AND SEPARATION OF MOLECULES. Gilles Frache Materials Characterization Day October 14 th 2016 LOCALISATION, IDENTIFICATION AND SEPARATION OF MOLECULES Gilles Frache Materials Characterization Day October 14 th 2016 1 MOLECULAR ANALYSES Which focus? LOCALIZATION of molecules by Mass Spectrometry

More information

In search for obesogens. Ewa Szalowska BDS Amsterdam 2012

In search for obesogens. Ewa Szalowska BDS Amsterdam 2012 In search for obesogens Ewa Szalowska BDS Amsterdam 212 Obesogens-an environmental link to Obesogens (B. Blumberg 26)- a subset of endocrine disrupting chemicals (EDCs) that activate PPARγ obesity PPARγ

More information

Examination of Mechanisms of Hepatotoxicity of Anti-diabetic PPARγ Agonists Using Applied Biosystems Rat Whole Genome Microarrays

Examination of Mechanisms of Hepatotoxicity of Anti-diabetic PPARγ Agonists Using Applied Biosystems Rat Whole Genome Microarrays Examination of Mechanisms of Hepatotoxicity of Anti-diabetic PPARγ Agonists Using Applied Biosystems Rat Whole Genome Microarrays Lu Zhang b, Lei Guo a, Leming Shi a, Weida Tong a, Yongming Sun b, Gary

More information

Chip-Based E-Tip SPE followed by Infusion MS. Copyright by Jack Henion, 2015 Lecture 1, Page 30

Chip-Based E-Tip SPE followed by Infusion MS. Copyright by Jack Henion, 2015 Lecture 1, Page 30 Chip-Based E-Tip SPE followed by Infusion MS Copyright by Jack Henion, 2015 Lecture 1, Page 30 Infusion -MS Analysis of Sample Mixtures HPLC Mass Spec Elution/spray solvent Pipette tip with micro SPE packing

More information

Mamofillin New aesthetic perspective

Mamofillin New aesthetic perspective New aesthetic perspective info@ White adipose tissue (WAT) White adipose tissue (WAT) is the prevalent type in human adults functioning as the major storage site for the lipids absorbed from daily intake

More information

MALDI Imaging Drug Imaging Detlev Suckau Head of R&D MALDI Bruker Daltonik GmbH. December 19,

MALDI Imaging Drug Imaging Detlev Suckau Head of R&D MALDI Bruker Daltonik GmbH. December 19, MALDI Imaging Drug Imaging Detlev Suckau Head of R&D MALDI Bruker Daltonik GmbH December 19, 2014 1 The principle of MALDI imaging Spatially resolved mass spectra are recorded Each mass signal represents

More information

Nitrated Fatty Acids Formation and Actions Bruce Freeman, PhD Department of Pharmacology University of Pittsburgh School of Medicine

Nitrated Fatty Acids Formation and Actions Bruce Freeman, PhD Department of Pharmacology University of Pittsburgh School of Medicine Nitrated Fatty Acids Formation and Actions Bruce Freeman, PhD Department of Pharmacology University of Pittsburgh School of Medicine Sunrise Free Radical School SFRBM 2005 Austin,Tx Bruce Freeman 1 Objectives

More information

PROGRESS TOWARDS OBJECTIVES, SIGNIFICANT RESULTS, DEVIATIONS, REASONS FOR FAILING, CORRECTIVE ACTIONS

PROGRESS TOWARDS OBJECTIVES, SIGNIFICANT RESULTS, DEVIATIONS, REASONS FOR FAILING, CORRECTIVE ACTIONS FINAL REPORT Grant Agreement PIEF-GA-2011-303197 Obesity and Light PROGRESS TOWARDS OBJECTIVES, SIGNIFICANT RESULTS, DEVIATIONS, REASONS FOR FAILING, CORRECTIVE ACTIONS For the total period (2 years) three

More information

Development of a Bioanalytical Method for Quantification of Amyloid Beta Peptides in Cerebrospinal Fluid

Development of a Bioanalytical Method for Quantification of Amyloid Beta Peptides in Cerebrospinal Fluid Development of a Bioanalytical Method for Quantification of Amyloid Beta Peptides in Cerebrospinal Fluid Joanne ( 乔安妮 ) Mather Senior Scientist Waters Corporation Data courtesy of Erin Chambers and Mary

More information

Life Sciences METABOLISM. Transform Your Metabolic Research

Life Sciences METABOLISM. Transform Your Metabolic Research METABOLISM Transform Your Metabolic Research COMPREHENSIVE TOOLS FOR ADVANCING YOUR METABOLIC RESEARCH Metabolism refers to a set of chemical reactions which are responsible for transforming carbohydrates,

More information

Ultra High Definition Optimizing all Analytical Dimensions

Ultra High Definition Optimizing all Analytical Dimensions Ultra High Definition Optimizing all Analytical Dimensions Sensitivity Dynamic Range Signal Response Linearity Separation Speed Peak Capacity Chromatogram Mass Spectrum Mass Accuracy Resolving Power Acquisition

More information

Effects of TBCO on the Reproductive Capacity of 2 Generations of Japanese Medaka (Oryzias latipes)

Effects of TBCO on the Reproductive Capacity of 2 Generations of Japanese Medaka (Oryzias latipes) Effects of on the Reproductive Capacity of 2 Generations of Japanese Medaka (Oryzias latipes) Br Br Br Br Steve Wiseman University of Saskatchewan Multigenerational Effects Pesticides Vinclozolin (anti-androgen)

More information

Discrimination of Human Astrocytoma Subtypes by Lipid Analysis Using Desorption Electrospray Ionization Imaging Mass Spectrometry

Discrimination of Human Astrocytoma Subtypes by Lipid Analysis Using Desorption Electrospray Ionization Imaging Mass Spectrometry Discrimination of Human Astrocytoma Subtypes by Lipid Analysis Using Desorption Electrospray Ionization Imaging Mass Spectrometry L. S. Eberlin, A. L. Dill, A. J. Golby, K. L. Ligon, J. M. Wiseman, R.

More information

Endocrine Disrupters as Obesogens

Endocrine Disrupters as Obesogens Endocrine Disrupters as Obesogens Is the environment making us fat? Bruce Blumberg, Ph.D. Department of Developmental and Cell Biology Department of Pharmaceutical Sciences Developmental Biology Center

More information

Innovations in Large Volume Injection

Innovations in Large Volume Injection Innovations in Large Volume Injection Applications of a Chromatographic Zone as Inlet System for GC/MS Jeffery S. Hollis APEX Technologies Silicon Valley, Introduction In typical GC/MS analyses, only a

More information

LC/MS/MS Method for Analysis of Naphthenic Acids from Aqueous Samples

LC/MS/MS Method for Analysis of Naphthenic Acids from Aqueous Samples LC/MS/MS Method for Analysis of Naphthenic Acids from Aqueous Samples By: Million Woudneh 1, Coreen Hamilton 1, Guanghui Wang 1, Preston McEachern 2 1 Axys Analytical Services Ltd., Sidney, BC 2 Alberta

More information

Michal Godula Thermo Fisher Scientific. The world leader in serving science

Michal Godula Thermo Fisher Scientific. The world leader in serving science Resolving the food authenticity challenges using advanced isotopic ratio and Thermo Scientific Orbitrap high resolution mass spectrometry tools in practice Michal Godula Thermo Fisher Scientific The world

More information

Automated Purification and Analytical Reinjection of a Small Molecule Drug, Probenecid, on a Gilson LC/MS Dual Function System

Automated Purification and Analytical Reinjection of a Small Molecule Drug, Probenecid, on a Gilson LC/MS Dual Function System Automated Purification and Analytical Reinjection of a Small Molecule Drug, Probenecid, on a Gilson LC/MS Dual Function System Keywords Introduction Application Note PHA0413 High Pressure Liquid Chromatography

More information

Proteomics of body liquids as a source for potential methods for medical diagnostics Prof. Dr. Evgeny Nikolaev

Proteomics of body liquids as a source for potential methods for medical diagnostics Prof. Dr. Evgeny Nikolaev Proteomics of body liquids as a source for potential methods for medical diagnostics Prof. Dr. Evgeny Nikolaev Institute for Biochemical Physics, Rus. Acad. Sci., Moscow, Russia. Institute for Energy Problems

More information

Choosing the metabolomics platform

Choosing the metabolomics platform Choosing the metabolomics platform Stephen Barnes, PhD Department of Pharmacology & Toxicology University of Alabama at Birmingham sbarnes@uab.edu Challenges Unlike DNA, RNA and proteins, the metabolome

More information

The Impact of Column Peak Capacity on the Multi- dimensional Chromatography of Complex Peptide Mixtures

The Impact of Column Peak Capacity on the Multi- dimensional Chromatography of Complex Peptide Mixtures ISPPP 2003 November 12, 2003 The Impact of Column Peak Capacity on the Multi- dimensional Chromatography of Complex Peptide Mixtures Martin Gilar Life Sciences Chemistry, Waters Corporation Outline Highly

More information

Identification of GLP1R agonists using a novel high throughput screening assay Wan Namkung, Ph.D.

Identification of GLP1R agonists using a novel high throughput screening assay Wan Namkung, Ph.D. Identification of GLP1R agonists using a novel high throughput screening assay Wan Namkung, Ph.D. College of Pharmacy, Yonsei University Contents High-throughput screening (HTS) HTS assays for identification

More information

Dr. Erin E. Chambers Waters Corporation. Presented by Dr. Diego Rodriguez Cabaleiro Waters Europe Waters Corporation 1

Dr. Erin E. Chambers Waters Corporation. Presented by Dr. Diego Rodriguez Cabaleiro Waters Europe Waters Corporation 1 Development of an SPE-LC/MS/MS Assay for the Simultaneous Quantification of Amyloid Beta Peptides in Cerebrospinal Fluid in Support of Alzheimer s Research Dr. Erin E. Chambers Waters Corporation Presented

More information

Introduction to the Oligo HTCS Systems. Novatia, LLC

Introduction to the Oligo HTCS Systems. Novatia, LLC Introduction to the Oligo HTCS Systems Novatia, LLC What is the Oligo HTCS and what can it do? Automated ESI/MS system that can analyze up to 14 oligonucleotide samples/day (>3/day with twin autosampler)

More information

Combining molecular modelling with experiments: Sulfonylureas and glinides as new PPARγ agonists

Combining molecular modelling with experiments: Sulfonylureas and glinides as new PPARγ agonists Combining molecular modelling with experiments: Sulfonylureas and glinides as new PPARγ agonists Marco Scarsi Biozentrum - Swiss Institute of Bioinformatics Drug discovery and development 12-15 years of

More information

Metabolic Solutions Development Company, Kalamazoo, USA.

Metabolic Solutions Development Company, Kalamazoo, USA. New Insulin Sensitizers Produce Differentiation of Brown-like Adipose Cells from a Subcutaneous Fat Depot and Increase Secretion of Adiponectin in vitro William G. McDonald, Serena L. Cole, Danielle D.

More information

REDOX PROTEOMICS. Roman Zubarev.

REDOX PROTEOMICS. Roman Zubarev. REDOX PROTEOMICS Roman Zubarev Roman.Zubarev@ki.se Physiological Chemistry I, Department for Medical Biochemistry & Biophysics, Karolinska Institutet, Stockholm What is (RedOx) Proteomics? Proteomics -

More information

Introduction to Proteomics 1.0

Introduction to Proteomics 1.0 Introduction to Proteomics 1.0 CMSP Workshop Pratik Jagtap Managing Director, CMSP Objectives Why are we here? For participants: Learn basics of MS-based proteomics Learn what s necessary for success using

More information

MASS SPECTROMETRY BASED METABOLOMICS. Pavel Aronov. ABRF2010 Metabolomics Research Group March 21, 2010

MASS SPECTROMETRY BASED METABOLOMICS. Pavel Aronov. ABRF2010 Metabolomics Research Group March 21, 2010 MASS SPECTROMETRY BASED METABOLOMICS Pavel Aronov ABRF2010 Metabolomics Research Group March 21, 2010 Types of Experiments in Metabolomics targeted non targeted Number of analyzed metabolites is limited

More information

Analysis of HMF by HPLC

Analysis of HMF by HPLC COST Action 927 Training School Building Skills on the Analysis of Thermal Process Contaminants in Foods 22-26 October 2007, Ankara Analysis of HMF by HPLC Vural Gökmen O O OH Background O COOH O R 2 Carbonyl

More information

Metabolomics: quantifying the phenotype

Metabolomics: quantifying the phenotype Metabolomics: quantifying the phenotype Metabolomics Promises Quantitative Phenotyping What can happen GENOME What appears to be happening Bioinformatics TRANSCRIPTOME What makes it happen PROTEOME Systems

More information

Detection of Low Level of Chloramphenicol in Milk and Honey with MIP SPE and LC-MS-MS

Detection of Low Level of Chloramphenicol in Milk and Honey with MIP SPE and LC-MS-MS Detection of Low Level of Chloramphenicol in Milk and Honey with MIP SPE and LC-MS-MS Olga Shimelis, An Trinh, and Michael Ye Supelco, Div. of Sigma-Aldrich, Bellefonte, PA T407125 Introduction Molecularly

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION doi:10.1038/nature13418 Supplementary Results: USP30 opposes autophagic flux In HEK-293 cells, USP30 overexpression increased basal LC3-II levels, dependent on enzymatic activity,

More information

Supplemental Material:

Supplemental Material: Supplemental Material: MATERIALS AND METHODS RNA interference Mouse CHOP sirna (ON-TARGETplus SMARTpool Cat# L-062068-00) and control sirna (ON-TARGETplus Control) were purchased from Dharmacon. Transfection

More information

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003

Key Words: Brassica oleraceae, glucosinolate, liquid chromatography mass spectrometry, FNH-I-003 IDENTIFICATION OF MAJOR GLUCOSINOLATES IN BROCCOLI (Brassica oleracea var. italica) BY LIQUID CHROMATOGRAPHY MASS SPECTROMETRY (LC-MS) AND DETERMINATION OF ANTICANCER PROPERTIES OF BROCCOLI EXTRACTS Carlos

More information

MS/MS as an LC Detector for the Screening of Drugs and Their Metabolites in Race Horse Urine

MS/MS as an LC Detector for the Screening of Drugs and Their Metabolites in Race Horse Urine Application Note: 346 MS/MS as an LC Detector for the Screening of Drugs and Their Metabolites in Race Horse Urine Gargi Choudhary and Diane Cho, Thermo Fisher Scientific, San Jose, CA Wayne Skinner and

More information

High-Throughput Analysis of Oligonucleotides using Automated Electrospray Ionization Mass Spectrometry

High-Throughput Analysis of Oligonucleotides using Automated Electrospray Ionization Mass Spectrometry High-Throughput Analysis of Oligonucleotides using Automated Electrospray Ionization Mass Spectrometry Mark E. Hail 1, Brian Elliott 2, Kerry Nugent 3, Jeffrey L. Whitney 1, and David J. Detlefsen 1 1

More information

FOURIER TRANSFORM MASS SPECTROMETRY

FOURIER TRANSFORM MASS SPECTROMETRY FOURIER TRANSFORM MASS SPECTROMETRY https://goo.gl/vx3ogw FT-ICR Theory Ion Cyclotron Motion Inward directed Lorentz force causes ions to move in circular orbits about the magnetic field axis Alan G. Marshall,

More information

Quantification with Proteome Discoverer. Bernard Delanghe

Quantification with Proteome Discoverer. Bernard Delanghe Quantification with Proteome Discoverer Bernard Delanghe Overview: Which approach to use? Proteome Discoverer Quantification Method What When to use Metabolic labeling SILAC Cell culture systems Small

More information

Supporting information for. Determination of sub nm levels of low molecular mass (LMM) thiols in natural waters by liquid

Supporting information for. Determination of sub nm levels of low molecular mass (LMM) thiols in natural waters by liquid Supporting information for Determination of sub nm levels of low molecular mass (LMM) thiols in natural waters by liquid chromatography tandem mass spectrometry after derivatization with p-(hydroxymercuri)

More information

Using Hydrophilic Interaction Chromatography (HILIC) for the Retention of Highly Polar Analytes

Using Hydrophilic Interaction Chromatography (HILIC) for the Retention of Highly Polar Analytes Using Hydrophilic Interaction Chromatography (HILIC) for the Retention of Highly Polar Analytes Eric S. Grumbach,, Diane M. Diehl and Jeffrey R. Mazzeo 2003 Waters Corp. Outline Introduction HILIC Definition

More information

GPR120 *** * * Liver BAT iwat ewat mwat Ileum Colon. UCP1 mrna ***

GPR120 *** * * Liver BAT iwat ewat mwat Ileum Colon. UCP1 mrna *** a GPR120 GPR120 mrna/ppia mrna Arbitrary Units 150 100 50 Liver BAT iwat ewat mwat Ileum Colon b UCP1 mrna Fold induction 20 15 10 5 - camp camp SB202190 - - - H89 - - - - - GW7647 Supplementary Figure

More information

High resolution mass spectrometry for bioanalysis at Janssen. Current experiences and future perspectives

High resolution mass spectrometry for bioanalysis at Janssen. Current experiences and future perspectives High resolution mass spectrometry for bioanalysis at Janssen. Current experiences and future perspectives Lieve Dillen Drug Safety Sciences Analytical Sciences, Non-regulated Bioanalysis Presentation outline

More information

Fused-Core Particles:

Fused-Core Particles: Fused-Core Particles: Varying Shell Thickness and Pore Size Stephanie A. Schuster; Joseph J. Kirkland; Brian M. Wagner; Barry E. Boyes; William L. Johnson; Timothy J. Langlois; Joseph J. DeStefano Advanced

More information

Supporting information

Supporting information Supporting information Figure legends Supplementary Table 1. Specific product ions obtained from fragmentation of lithium adducts in the positive ion mode comparing the different positional isomers of

More information

Mass Spectrometry Infrastructure

Mass Spectrometry Infrastructure Mass Spectrometry Infrastructure Todd Williams, Ph.D. Director KU Mass Spectrometry and Analytical Proteomics Laboratory Mass Spectrometry Lab B025 Malott Hall Mission The Mass Spectrometry and analytical

More information

Supporting Information

Supporting Information Supporting Information Cyclic Peptidyl Inhibitors against Human Peptidyl-Prolyl Isomerase Pin1 Tao Liu, Yu Liu, Hung-Ying Kao, *,, and Dehua Pei Table of Contents: Table S1. Structures of amino acid building

More information

Supporting Information

Supporting Information Supporting Information Chlorinated Polyfluorinated Ether Sulfonates Exhibit Higher Activity towards Peroxisome Proliferator-Activated Receptors Signaling Pathways than Perfluorooctane Sulfonate Chuan-Hai

More information

Terminology. Metabolite: substance produced or used during metabolism such as lipids, sugars and amino acids

Terminology. Metabolite: substance produced or used during metabolism such as lipids, sugars and amino acids Terminology Metabolite: substance produced or used during metabolism such as lipids, sugars and amino acids A metabolite may be described as a compound which is internalized, chemically converted or secreted

More information

Performance of an ultra low elution volume 96-well plate

Performance of an ultra low elution volume 96-well plate Performance of an ultra low elution volume 96-well plate Claude R. Mallet, Ziling Lu, Jeff R. Mazzeo, Uwe D. Neue Waters Corporation PittCon 2003 March 10-14 2003 Orlando, Florida Today s Challenges Faced

More information

Increased Identification Coverage and Throughput for Complex Lipidomes

Increased Identification Coverage and Throughput for Complex Lipidomes Increased Identification Coverage and Throughput for Complex Lipidomes Reiko Kiyonami, David Peake, Yingying Huang, Thermo Fisher Scientific, San Jose, CA USA Application Note 607 Key Words Q Exactive

More information

Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy

Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy (Courtesy of Magda Stumpfova. Used with permission.) Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy M.D. Gomes, S.H. Lecker, R.T. Jagoe, A. Navon, and A.L. Goldberg PNAS,

More information

Bioanalytical Quantitation of Biotherapeutics Using Intact Protein vs. Proteolytic Peptides by LC-HR/AM on a Q Exactive MS

Bioanalytical Quantitation of Biotherapeutics Using Intact Protein vs. Proteolytic Peptides by LC-HR/AM on a Q Exactive MS Bioanalytical Quantitation of Biotherapeutics Using Intact Protein vs. Proteolytic Peptides by LC-HR/AM on a Q Exactive MS Jenny Chen, Hongxia Wang, Zhiqi Hao, Patrick Bennett, and Greg Kilby Thermo Fisher

More information

Metabolomic and Lipidomic Research in Diabetes and Obesity 08/07/2013

Metabolomic and Lipidomic Research in Diabetes and Obesity 08/07/2013 Novel Tools for omics -based Analysis of Complex Mixtures; Application to a Investigation of the Effect of Prolonged Glucose Stimulation on the Lipid Profile of Mouse Heart Muscle John P. Shockcor, PhD,

More information

LC-MS-based Metabolomics: Workflows, Strategies and Challenges

LC-MS-based Metabolomics: Workflows, Strategies and Challenges LC-MS-based Metabolomics: Workflows, Strategies and Challenges Presented by: Sponsored by: Dr. Clary Clish Director of the Metabolite Profiling Platform at the Broad Institute of MIT and Harvard LC-MS-based

More information

Advancing your Forensic Toxicology Analyses; Adopting the Latest in Mass Spectrometry Innovations

Advancing your Forensic Toxicology Analyses; Adopting the Latest in Mass Spectrometry Innovations Advancing your Forensic Toxicology Analyses; Adopting the Latest in Mass Spectrometry Innovations For Research Use Only. Not for use in diagnostic procedures. 1 2015 AB Sciex RUO-MKT-11-1018-A For research

More information

Barry Boyes 1,2, Shujuan Tao 2, and Ron Orlando 2

Barry Boyes 1,2, Shujuan Tao 2, and Ron Orlando 2 Barry Boyes 1,2, Shujuan Tao 2, and Ron Orlando 2 1 Advanced Materials Technology, Inc. Wilmington, DE USA 2 Complex Carbohydrate Research Center University of Georgia, Athens, GA USA bboyes@advanced-materials-tech.com

More information

supplementary information

supplementary information DOI: 1.138/ncb1 Control Atg7 / NAC 1 1 1 1 (mm) Control Atg7 / NAC 1 1 1 1 (mm) Lamin B Gstm1 Figure S1 Neither the translocation of into the nucleus nor the induction of antioxidant proteins in autophagydeficient

More information

Molecular Cell Biology - Problem Drill 19: Cell Signaling Pathways and Gene Expression

Molecular Cell Biology - Problem Drill 19: Cell Signaling Pathways and Gene Expression Molecular Cell Biology - Problem Drill 19: Cell Signaling Pathways and Gene Expression Question No. 1 of 10 1. Which statement about cell signaling is correct? Question #1 (A) Cell signaling involves receiving

More information

Agilent 6490 Triple Quadrupole LC/MS System with ifunnel Technology. Ultra sensitive quantitative performance

Agilent 6490 Triple Quadrupole LC/MS System with ifunnel Technology. Ultra sensitive quantitative performance Agilent 6490 Triple Quadrupole LC/MS System with ifunnel Technology Ultra sensitive quantitative performance Unmatched quantitative performance for the most challenging analyses The Agilent 6490 Triple

More information

Quantitative Analysis of Vit D Metabolites in Human Plasma using Exactive System

Quantitative Analysis of Vit D Metabolites in Human Plasma using Exactive System Quantitative Analysis of Vit D Metabolites in Human Plasma using Exactive System Marta Kozak Clinical Research Applications Group Thermo Fisher Scientific San Jose CA Clinical Research use only, Not for

More information

ACE C18-AR Use the Power!

ACE C18-AR Use the Power! combines the retention and separation characteristics of a C18 phase with the extra selectivity of an integral phenyl functional group. The combination provides extra resolving power for a wide variety

More information

Supplementary information Oxaliplatin reacts with DMSO only in the presence of water

Supplementary information Oxaliplatin reacts with DMSO only in the presence of water Electronic Supplementary Material (ESI) for Dalton Transactions. This journal is The Royal Society of Chemistry 2017 Supplementary information Oxaliplatin reacts with DMSO only in the presence of water

More information

Supplemental Information. NRF2 Is a Major Target of ARF. in p53-independent Tumor Suppression

Supplemental Information. NRF2 Is a Major Target of ARF. in p53-independent Tumor Suppression Molecular Cell, Volume 68 Supplemental Information NRF2 Is a Major Target of ARF in p53-independent Tumor Suppression Delin Chen, Omid Tavana, Bo Chu, Luke Erber, Yue Chen, Richard Baer, and Wei Gu Figure

More information

Robust Cell-Based Assays for Detection of Neutralizing Antibodies to Follow on Biologics like Insulin, GLP1 & Avastin

Robust Cell-Based Assays for Detection of Neutralizing Antibodies to Follow on Biologics like Insulin, GLP1 & Avastin Robust Cell-Based Assays for Detection of Neutralizing Antibodies to Follow on Biologics like Insulin, GLP1 & Avastin Abhi Saharia, Ph. D. Director of Marketing Bioassays in Biologics Development Research

More information

New tools bring greater understanding to cellular metabolism research

New tools bring greater understanding to cellular metabolism research New tools bring greater understanding to cellular metabolism research Mourad Ferhat, Ph.D, 7 Juin 2017 FDSS Users Meeting, Hamamatsu mourad.ferhat@promega.com Today s talk : focus on new cell-based assays

More information

NCUT National Centre for Upgrading Technology

NCUT National Centre for Upgrading Technology NCUT National Centre for Upgrading Technology a Canada Alberta alliance for bitumen and heavy oil research Comparison of the Reactivity of Naphthenic Acids in Athabasca bitumen and San Joaquin Valley Parviz

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature12215 Supplementary Figure 1. The effects of full and dissociated GR agonists in supporting BFU-E self-renewal divisions. BFU-Es were cultured in self-renewal medium with indicated GR

More information

Challenges in Separation Technologies

Challenges in Separation Technologies Challenges in Separation Technologies Erin Shammel Baker Xing Zhang, Yehia Ibrahim, Matthew Monroe, Dennis Mehinagic, Justin Teeguarden, Thomas Metz and Richard D. Smith Pacific Northwest National Laboratory

More information

Separation of Vitamin D and Vitamin D Metabolites on FLARE C18 MM (Mixed Mode) HPLC Column

Separation of Vitamin D and Vitamin D Metabolites on FLARE C18 MM (Mixed Mode) HPLC Column Diamond Analytics Technical Note: T131-1 Separation of Vitamin D and Vitamin D Metabolites on FLARE C1 MM (Mixed Mode) HPLC Column Introduction In this technical note, the versatility of the diamond-based

More information

Corticosteroids. Optimizations. Jens Hinge Andersen. National Food Institute Danish Technical University

Corticosteroids. Optimizations. Jens Hinge Andersen. National Food Institute Danish Technical University Corticosteroids Optimizations Jens Hinge Andersen National Food Institute Danish Technical University jhia@food.dtu.dk Optimizations - corticosteroids : Minimizing ion-suppression from bovine urin Liver:

More information

Cell Communication and Cell Signaling

Cell Communication and Cell Signaling Cell Communication and Cell Signaling Why is cell signaling important? Why is cell signaling important? Allows cells to communicate and coordinate functions/activities of the organism Usually involves

More information

Comparison of a UPLC Method across Multiple UHPLC Systems

Comparison of a UPLC Method across Multiple UHPLC Systems Comparison of a UPLC Method across Multiple UHPLC Systems Tanya Jenkins Waters Corporation, Milford, MA, U.S. INTRODUCTION In 2004, Waters introduced the ACQUITY UPLC System. Since this launch, many liquid

More information

Analysis of Pesticides (II) Metribuzin & their metabolites in Rice Jun Yonekubo, Nihon Waters, JAPAN

Analysis of Pesticides (II) Metribuzin & their metabolites in Rice Jun Yonekubo, Nihon Waters, JAPAN Waters Alliance LC/MS System Analytical Conditions Chromatograms Mass Spectra Calibration Quantitation Analysis of Pesticides (II) Metribuzin & their metabolites in Rice Jun Yonekubo,, JAPAN Key Words

More information

Supplementary Figure 1. Spatial distribution of LRP5 and β-catenin in intact cardiomyocytes. (a) and (b) Immunofluorescence staining of endogenous

Supplementary Figure 1. Spatial distribution of LRP5 and β-catenin in intact cardiomyocytes. (a) and (b) Immunofluorescence staining of endogenous Supplementary Figure 1. Spatial distribution of LRP5 and β-catenin in intact cardiomyocytes. (a) and (b) Immunofluorescence staining of endogenous LRP5 in intact adult mouse ventricular myocytes (AMVMs)

More information

Join the mass movement towards mass spectrometry

Join the mass movement towards mass spectrometry Join the mass movement towards mass spectrometry Thermo Scientific ISQ EC single quadrupole mass spectrometer Embrace the power of mass spectrometry Achieving a comprehensive understanding of the samples

More information

UPLC-HRMS: A tool for multi-residue veterinary drug methods

UPLC-HRMS: A tool for multi-residue veterinary drug methods AOAC, Paris, November 23-24, 2009 UPLC-HRMS: A tool for multi-residue veterinary drug methods Anton Kaufmann Official Food Control Authority of the Canton of Zurich (Kantonales Labor Zürich) The challenge

More information

The use of mass spectrometry in lipidomics. Outlines

The use of mass spectrometry in lipidomics. Outlines The use of mass spectrometry in lipidomics Jeevan Prasain jprasain@uab.edu 6-2612 utlines Brief introduction to lipidomics Analytical methodology: MS/MS structure elucidation of phospholipids Phospholipid

More information

MBB317. Dr D MANGNALL OBESITY. Lecture 2

MBB317. Dr D MANGNALL OBESITY. Lecture 2 MBB317 Dr D MANGNALL OBESITY Lecture 2 When the structure of the insulin receptor was first discovered it was assumed that the active beta subunit tyrosine kinase would phosphorylate some intracellular

More information

Analysis of Testosterone, Androstenedione, and Dehydroepiandrosterone Sulfate in Serum for Clinical Research

Analysis of Testosterone, Androstenedione, and Dehydroepiandrosterone Sulfate in Serum for Clinical Research Analysis of Testosterone, Androstenedione, and Dehydroepiandrosterone Sulfate in Serum for Clinical Research Dominic Foley, Michelle Wills, and Lisa Calton Waters Corporation, Wilmslow, UK APPLICATION

More information

New Developments in LC-IMS-MS Proteomic Measurements and Informatic Analyses

New Developments in LC-IMS-MS Proteomic Measurements and Informatic Analyses New Developments in LC-IMS-MS Proteomic Measurements and Informatic Analyses Erin Shammel Baker Kristin E. Burnum-Johnson, Xing Zhang, Cameron P. Casey, Yehia M. Ibrahim, Matthew E. Monroe, Tao Liu, Brendan

More information

The HPLC Preparative Scale-Up of Soybean Phospholipids Application

The HPLC Preparative Scale-Up of Soybean Phospholipids Application The HPLC Preparative Scale-Up of Soybean Phospholipids Application Food and Flavors Authors Cliff Woodward and Ron Majors Agilent Technologies, Inc. 285 Centerville Road Wilmington, DE 1988-161 USA Abstract

More information

Supporting Information

Supporting Information Supporting Information Development of a High Coverage Pseudotargeted Lipidomics Method Based on Ultra-High Performance Liquid Chromatography-Mass Spectrometry Qiuhui Xuan 1,2#, Chunxiu Hu 1#, Di Yu 1,2,

More information

Principles of Shotgun Lipidomics

Principles of Shotgun Lipidomics Principles of Shotgun Lipidomics Xianlin Han Diabetes and Obesity Research Center Sanford-Burnham Medical Research Institute Lake Nona Orlando, FL 32827 What is shotgun lipidomics? Original definition

More information

Organic Chemistry Laboratory Fall Lecture 3 Gas Chromatography and Mass Spectrometry June

Organic Chemistry Laboratory Fall Lecture 3 Gas Chromatography and Mass Spectrometry June 344 Organic Chemistry Laboratory Fall 2013 Lecture 3 Gas Chromatography and Mass Spectrometry June 19 2013 Chromatography Chromatography separation of a mixture into individual components Paper, Column,

More information

Simple Method (IS-MRM) to Monitor Lysophospholipids and Phospholipids During LC-MS Method Development via In-Source CID

Simple Method (IS-MRM) to Monitor Lysophospholipids and Phospholipids During LC-MS Method Development via In-Source CID Simple Method (IS-MRM) to Monitor Lysophospholipids and Phospholipids During LC-MS Method Development via In-Source CID James Little, Eastman Chemical Company, Kingsport, TN Overview Phospholipids and

More information

PAX8-PPARγ Fusion Protein in thyroid carcinoma

PAX8-PPARγ Fusion Protein in thyroid carcinoma Sidney H. Ingbar Lecture, ATA 10/17/2013: PAX8-PPARγ Fusion Protein in thyroid carcinoma Ronald J. Koenig, MD, PhD Division of Metabolism, Endocrinology & Diabetes University of Michigan Learning Objectives

More information

Effects of Salt Interactions in Oil Sands Process Waters on Ceriodaphnia dubia using an Isobolographic Approach

Effects of Salt Interactions in Oil Sands Process Waters on Ceriodaphnia dubia using an Isobolographic Approach ABSTRACT Effects of Salt Interactions in Oil Sands Process Waters on Ceriodaphnia dubia using an Isobolographic Approach Toxicology 480.3 2008 2009 Pola Wojnarowicz Supervised by Dr. Karsten Liber Toxicology

More information

ab Adipogenesis Assay Kit (Cell-Based)

ab Adipogenesis Assay Kit (Cell-Based) ab133102 Adipogenesis Assay Kit (Cell-Based) Instructions for Use For the study of induction and inhibition of adipogenesis in adherent cells. This product is for research use only and is not intended

More information

Dienes Derivatization MaxSpec Kit

Dienes Derivatization MaxSpec Kit Dienes Derivatization MaxSpec Kit Item No. 601510 www.caymanchem.com Customer Service 800.364.9897 Technical Support 888.526.5351 1180 E. Ellsworth Rd Ann Arbor, MI USA TABLE OF CONTENTS GENERAL INFORMATION

More information

Supplementary Figure 1. DJ-1 modulates ROS concentration in mouse skeletal muscle.

Supplementary Figure 1. DJ-1 modulates ROS concentration in mouse skeletal muscle. Supplementary Figure 1. DJ-1 modulates ROS concentration in mouse skeletal muscle. (a) mrna levels of Dj1 measured by quantitative RT-PCR in soleus, gastrocnemius (Gastroc.) and extensor digitorum longus

More information

Quantification of PtdInsP 3 molecular species in cells and tissues by mass spectrometry

Quantification of PtdInsP 3 molecular species in cells and tissues by mass spectrometry Nature Methods Quantification of PtdInsP 3 molecular species in cells and tissues by mass spectrometry Jonathan Clark, Karen E Anderson, Veronique Juvin, Trevor S Smith, Fredrik Karpe, Michael J Wakelam,

More information

Matrix-induced Signal Enhancement of Propamocarb in LC-MS/MS

Matrix-induced Signal Enhancement of Propamocarb in LC-MS/MS Observations concerning a compound a matrix a method other Matrix-induced Signal Enhancement of Propamocarb in LC-MS/MS Reported by: EURL-SRM Version 1 (last update: 24.10.2012) Brief description of problem/observation/solution:

More information