The FRE1 Ferric Reductase of Saccharomyces cerevisiae Is a Cytochrome b Similar to That of NADPH Oxidase*

Size: px
Start display at page:

Download "The FRE1 Ferric Reductase of Saccharomyces cerevisiae Is a Cytochrome b Similar to That of NADPH Oxidase*"

Transcription

1 THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 271, No. 24, Issue of June 14, pp , 1996 Printed in U.S.A. The FRE1 Ferric Reductase of Saccharomyces cerevisiae Is a Cytochrome b Similar to That of NADPH Oxidase* (Received for publication, January 16, 1996, and in revised form, March 21, 1996) Karolyn P. Shatwell, Andrew Dancis, Andrew R. Cross, Richard D. Klausner, and Anthony W. Segal From the Department of Medicine, University College London, 5 University Street, London WC1E 6JJ, United Kingdom, NICHD, National Institutes of Health, Bethesda, Maryland 20892, and Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California Plasma membrane preparations from strains of the yeast Saccharomyces cerevisiae gave a reduced minus oxidized spectrum characteristic of a b-type cytochrome and very similar to the spectrum of flavocytochrome b 558 of human neutrophils. The magnitude of the signal correlated with the level of ferric reductase activity and the copy number of the FRE1 gene, indicating that the FRE1 protein is a cytochrome b. Sequence similarities with the flavin binding site of flavocytochrome b 558 and other members of the ferredoxin-nadp reductase family, together with increased levels of noncovalently bound FAD and iodonitrotetrazolium violet reductase activity in membranes from a yeast strain overexpressing ferric reductase, suggested that the FRE1 protein may also carry a flavin group. Potentiometric titrations indicated that FRE1, like neutrophil NADPH oxidase, has an unusually low redox potential, in the region of 250 mv, and binds CO. Iron uptake in Saccharomyces cerevisiae is a two-step process. An externally directed plasma membrane ferric reductase converts insoluble, environmental ferric (Fe 3 ) iron to the soluble ferrous (Fe 2 ) form which is transported across the membrane by an iron transport complex (Stearman et al., 1996). Reduction of Fe 3 is primarily attributable to the FRE1 protein (Dancis et al., 1990, 1992), although in its absence low levels of residual activity are detectable, due largely to a second reductase, FRE2 (Georgatsou and Alexandraki, 1994). The FRE1 gene encodes a protein 686 amino acids in length, with a calculated molecular mass of 78.8 kda. It has an apparent 22-amino acid membrane insertion leader peptide and hydropathic analysis (Fig. 1B) reveals multiple hydrophobic regions consistent with membrane spanning domains, thus indicating that the FRE1 gene product is a membrane bound structural component of the reductase. This view is supported by its homology with the large subunit, gp91 phox, of NADPH oxidase from human phagocytic cells (Dancis et al., 1992; Roman et al., 1993). NADPH oxidase requires the assembly of gp91 phox with a smaller subunit, p22 phox, creating the flavocytochrome b 558. This flavocytochrome is located in the plasma membrane and membrane of the specific granules, and becomes incorporated into the wall of the phagocytic vacuole. It takes electrons from NADPH in the cytoplasm and passes them * This work was supported in part by the Wellcome Trust and by National Institutes of Health Grant AI The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. To whom correspondence and reprint requests should be addressed. Tel.: ; Fax: across the membrane via FAD and heme to molecular oxygen, generating superoxide that is expelled into the lumen of the vacuole (Wientjes and Segal, 1995). The C-terminal 402 amino acids of FRE1 show 18% identity and 62% similarity with gp91 phox. In addition there are several clusters of much higher identity. These include an HPFTXXS motif which is believed to function in FAD binding in the respiratory burst oxidase and a glycine-rich motif and cysteineglycine couplet, which represent peptide loops thought to be involved in NADPH binding (Fig. 1A) (Taylor et al., 1993). The hydropathic profiles of the two proteins when aligned from the C terminus also show some resemblance (Fig. 1B). Given that both proteins are electron transporters, the similarity in structure suggested that FRE1 might also be a membrane bound flavocytochrome. Further evidence for this hypothesis came from Lesuisse and Labbe (1989) who reported that heme deficient yeast strains lack ferric reductase activity. In this report we present evidence that the yeast FRE1 protein is a cytochrome b and quite probably a flavocytochrome, with properties similar to those of flavocytochrome b 558 of the human NADPH oxidase. MATERIALS AND METHODS Strains and Media A parental strain H1085 (MAT ura3-52 leu2-3, 112) and two derivative strains of S. cerevisiae were used for these experiments. To create strain fre1::leu2, the FRE1 locus of H1085 was replaced with a LEU2 marker gene by double homologous recombination. The replacement of the genomic sequences lying between flanking ClaI sites of the FRE1 locus was verified by Southern blotting. To generate strain 352-FRE1, the 4.2-kilobase pair BamHI-SacI genomic fragment of FRE1 was subcloned into the vector YEp352, and this high copy number plasmid (approximately 40 copies per cell) was used to transform strain H1085 to uracil prototrophy. Cells were grown to a high density (A 600 approximately 1.5) in 6.7 g/liter yeast nitrogen base lacking iron and copper (BIO 101 Inc.), 20 g/liter dextrose and 20 g/ml uracil and/or 33 g/ml L-leucine as appropriate, at 30 C on an orbital shaker. They were then diluted back to an A 600 of 0.2 into YPD (1% yeast extract, 1% peptone, 2% dextrose) with 100 g/ml bathocuproine-disulfonic acid and grown for 5 h prior to harvesting (A 600 approximately ). Isolation of Plasma Membranes Cultures were harvested and the cells washed once in 0.4 M sucrose in buffer A (2 mm EDTA, 25 mm imidazole, ph 7.0, with protease inhibitors, 1 mm phenylmethylsulfonyl fluoride, 100 mm N-tosyl-L-phenylalanine chloromethyl ketone, 2 g/ml pepstatin A). They were then disrupted by vortexing with glass beads, diluted 3-fold in 0.4 M sucrose in buffer A and spun at 530 g. The supernatant was centrifuged at 22,000 g, and the pellet, which included the plasma membranes and mitochondria, was resuspended in buffer A and loaded onto a discontinuous sucrose gradient comprising 2.25 M, 1.65 M, and 1.1 M sucrose in buffer A. After overnight centrifugation at 80,000 g, the essentially pure plasma membranes were removed from the 2.25 M/1.65 M interface, diluted 4-fold, and pelleted at 30,000 g. Membranes were resuspended in 0.1 mm EDTA, 25 mm imidazole-hcl, ph 7.0, 50% glycerol and stored at 20 C. The absence of significant mitochondrial contamination in membrane preparations produced by this technique was demonstrated by measuring the level of

2 Yeast FRE1 Ferric Reductase, a Cytochrome b TABLE I Ferric reductase activity for cells at the time of harvesting, and heme and FAD concentrations for membrane preparations isolated subsequently Yeast strain Ferric reductase activity Heme concentration FAD concentration nmol/10 6 cells/h pmol/mg protein fre1::leu H FRE FIG. 1. Relatedness of the yeast ferric reductase, FRE1, and gp91 phox. A, shared amino acid motifs. Motifs correspond to the putative sites for 2, FAD-isoalloxazine binding; 4, NAD/P-ribose binding; and 5, NAD/P-adenine binding (identical residues are in bold, conserved residues are in italics). B, hydrophobicity plots for FRE1 and gp91 phox aligned from the C terminus (predicted amino acid sequences have been analyzed by the Kyte-Doolittle algorithm with a window size of 11 amino acids). Increasing hydrophobicity is shown above the x axis. The numbered scale reflects the amino acid positions for FRE1. The lines numbered 1 5 represent the positions of the motifs shown in part A. azide inhibitable ATPase activity using a modification of the method of Serrano (1988). Ferric Reductase Assay Cells were assayed for ferric reductase activity at the time of harvesting as described previously (Dancis et al., 1990). FAD Assay FAD was determined by reconstitution of apo-glucose oxidase activity. Membrane preparations were diluted with 25 mm imidazole-hcl, 0.1 mm EDTA (ph 7.0), boiled for 3 min to extract the FAD, and microcentrifuged for 5 min at rpm. The supernatant was added to a reaction mixture comprising 11.1 mm sodium citrate (ph 6.5), 0.44 mm 4-aminoantipyrine, 2.2 mm 3,5-dichloro-2-hydroxybenzene-sulfonic acid, 20 mg/ml D-glucose, 3.3 nm apo-glucose oxidase (from Aspergillus niger; purchased from Sigma and prepared essentially by the method of Morris and Buckler (1983)), 1.1 mg/ml horseradish peroxidase (from Boehringer Mannheim and further purified by ion exchange chromatography on a Mono Q resin), in a microtiter plate. The absorbance at 520 nm was monitored using a Dynatech MR7000 microtiter plate reader fitted with an Advanced Applications program cartridge, and the FAD concentration was determined from the rate of reaction against a standard curve. Superoxide Assay Superoxide generation was determined from the rate of cytochrome c reduction inhibitable by superoxide dismutase. Assays were performed in a 150- l final volume in 96-well microtiter plates. Measurements were made on detergent solubilized membranes (8 g of protein) in relaxation buffer (100 mm KCl, 3 mm NaCl, 3.5 mm MgCl 2,10mMPIPES, 1 1mMATP, ph 7.3) plus 108 M horse heart cytochrome c (Sigma), with and without 333 nm FAD, 160 M NADPH, and 180 units/ml superoxide dismutase (from bovine erythrocytes; Sigma). The absorbance was monitored at 550 nm and analyzed in a kinetic 1 The abbreviations used are: PIPES, 1,4-piperazinediethanesulfonic acid; INT, iodonitrotetrazolium violet (2-(4-iodophenyl)-3-(4-nitrophenyl)-5-phenyltetrazolium chloride); MOPS, 4-morpholinepropanesulfonic acid. microtiter plate reader. Iodonitrotetrazolium Violet (INT) Reductase Activity INT reductase assays were performed on solubilized membranes (8 g of protein) in relaxation buffer plus 43 M 2-(4-iodophenyl-3-(4-nitrophenyl)-5-phenyltetrazolium chloride and 180 units/ml superoxide dismutase, in the presence and absence of 333 nm FAD and 160 M NADPH. Increasing absorbance was monitored at 490 nm in a microtiter plate Protein Assay Protein was determined using the method of Schaffner and Weissmann (1973). Purification of Flavocytochrome b 558 Flavocytochrome b 558 was purified from the neutrophils of patients with chronic myeloid leukemia using a modification of the method of Harper et al. (1984). Spectroscopy Dithionite-reduced minus oxidized difference spectra were determined for the plasma membrane preparations using a Shimadzu UV-3000 double beam spectrophotometer. The concentration of heme was determined from the height of the Sorret peak in the reduced minus oxidized spectrum using an absorption coefficient of 121 mol cm 1 (Segal et al., 1992). Determination of Extinction (Absorbance) Coefficients Purified plasma membrane fractions from strain 352-FRE1 were solubilized in 1% (v/v) heptyl -D-thioglucopyranoside (Calbiochem) by stirring at 4 C for 30 min. Insoluble material was removed by centrifugation at 100,000 g for 30 min. A portion of the solubilized membrane was dissolved in alkaline pyridine (final concentration, 100 mm NaOH, 20% v/v pyridine), and the dithionite-reduced minus air-oxidized difference spectrum of the pyridine hemochrome was recorded. A of 20.7 mm 1 cm 1 (Porra and Jones, 1963) for the reduced minus oxidized protoheme pyridine hemochrome was used to calculate the concentration of protoheme in the solubilized membranes. A second portion of the solubilized extract was used to record the reduced minus oxidized difference spectrum of the hemoprotein in aqueous buffer and hence derive extinction coefficients. Potentiometric Titration Oxidation-reduction potential measurements were performed on solubilized membrane preparations as described previously (Cross et al., 1995b) in 50 mm MOPS, 100 mm KCl, ph 7.0. RESULTS Three strains of S. cerevisiae were used in this study; H1085, a wild-type strain, fre1::leu2, a mutant derived from H1085 by deletion of the FRE1 gene and 352-FRE1, the wild-type strain transformed with a high copy number plasmid carrying the FRE1 gene. The cells were grown under conditions that facilitated a high level of ferric reductase activity. Reduction of Fe 3 was measured at the time of harvesting and shown to be negligible in the deletion mutant and substantially raised in 352-FRE1 relative to the parental strain (Table I). Plasma membranes were isolated from these cultures on a sucrose density gradient and their dithionite-reduced minus oxidized spectra determined over the wavelength range nm. These spectra are shown together with a spectrum for pure neutrophil flavocytochrome b 558 in Fig. 2. The similarities are striking. H1085 and 352-FRE1 both gave spectra characteristic of a b-type cytochrome. There is an peak at 558 nm, a peak at 528 nm, and a large or heme peak at 428 nm. Importantly the magnitude of the peaks increases with the level of ferric reductase activity in the yeast cells (Table I) and with the FRE1 copy number indicating that FRE1 is the plasma membrane cytochrome b. A very small heme peak can be seen in the spectrum for the deletion mutant, fre1::leu2 (Fig. 2); this may be due either to another plasma membrane

3 14242 Yeast FRE1 Ferric Reductase, a Cytochrome b FIG. 3. Extinction coefficients of the FRE1 hemoprotein. The concentration of the hemoprotein was derived from the pyridine hemochrome spectrum as described under Materials and Methods. The spectrum shown is that of the dithionite-reduced minus air-oxidized difference spectrum. TABLE II Extinction coefficients for the FRE1 hemoprotein Absorbance band Extinction coefficient mm 1 cm 1 red (558) 29.9 ox (558) 10.8 r-o (558) 19.1 r-o (528) 5.9 Soret red (426) 196 Soret ox (412) 157 Soret r-o (427.5) 129 Soret peak-trough ( ) 202 FIG. 2.Reduced minus oxidized spectra for plasma membrane preparations from wild-type S. cerevisiae, H1085 (B), a mutant defective in ferric reductase activity, fre1::leu2 (A), and a strain in which FRE1 was overexpressed, 352-FRE1 (C), as compared with that of purified neutrophil flavocytochrome b 558 (D). The results shown are from a single representative experiment. reductase, possibly FRE2 (the level of FRE2 expression varies according to the strain background and the growth phase of the cells, and was minimal under the conditions of these experiments), or to a very low level of mitochondrial crosscontamination. To confirm the nature of the cytochrome, the dithionitereduced minus air-oxidized difference spectrum of the pyridine hemochrome was recorded for detergent-solubilized plasma membranes from strain 352-FRE1. The concentration of protoheme was calculated using of 20.7 mm 1 cm 1 (Porra and Jones, 1963) for the reduced minus oxidized protoheme pyridine hemochrome, and this in turn was used to derive the extinction coefficients from the reduced minus oxidized difference spectrum of the hemoprotein in aqueous buffer. The calculated extinction coefficients for the ferric reductase hemoprotein are shown in Fig. 3. The calculated values of the principal spectral features are summarized in Table II. Of interest is the unusually low absorbance of the -band in the reduced minus oxidized difference spectrum, a feature that is shared with neutrophil cytochrome b 558. The relatively small extinction coefficient is primarily a result of the large absorbance of the oxidized cytochrome in this spectral region. Attempts to determine the midpoint potential for FRE1 by potentiometric titration of the hemoprotein in solubilized plasma membrane fractions from strain 352-FRE1 did not yield optimal titrations, due to the apparent instability of the ferrous form of the heme which resulted in progressive loss of the absorbance spectrum. However, little reduction was observed at potentials above 200 mv and reduction was virtually complete at 300 mv (data not shown). Thus, the midpoint potential was estimated to be around 250 mv. This low redox potential is remarkably similar to that of flavocytochrome b 558 which has two heme centers with closely spaced midpoint potentials of 225 mv and 265 mv (Cross et al., 1995b). The low potential in the neutrophil system is necessary to catalyze the production of O 2. from molecular O2 at a kinetically competent rate and the low potential of the ferric reductase suggests that it too might be capable of generating O 2.. Neutrophil flavocytochrome b 558 forms a low affinity complex with CO (Cross et al., 1982). Although the cytochrome is thought to transfer electrons to O 2 from the heme edge rather than by direct ligation of O 2 to heme iron, the ability to bind CO is often taken as a sign of oxygen reactivity among hemoproteins. This ability is shared by the ferric reductase heme protein as shown in Fig. 4. Assuming the extinction coefficient of the ferrous-co complex is similar to that of the ferric hemoprotein, the ferric reductase is fully complexed to CO after a 180-s exposure of the ferrous form to CO and thus has a somewhat higher affinity for CO than cytochrome b 558. Approximately 40% of the latter forms a CO complex at room temperature and 1 atm CO (Cross et al., 1982). One possibility is that S. cerevisiae exploits the rapid reaction of O 2. with ferric iron as a mechanism for releasing environmental iron. Plasma membranes from strains fre1::leu2 and 352-FRE1 were tested for superoxide generation by meas-

4 Yeast FRE1 Ferric Reductase, a Cytochrome b TABLE III INT reductase activity in plasma membrane preparations from S. cerevisiae fre1::leu2, a FRE1 deletion mutant, and 352-FRE1, a strain carrying a high copy number FRE1 plasmid INT reductase activity Membrane FAD NADPH fre1::leu2 352-FRE1 nmol electrons/min/mg membrane protein FIG. 4.The reaction of ferrous cytochrome b with CO. Solubilized membranes were reduced with a few crystals of sodium dithionite and the reduced minus oxidized difference spectrum recorded (a). The reduced spectrum was stored in the spectrophotometer memory to obtain a new base line (reduced minus reduced) (b), and CO gas was passed through the sample at a rate of 1 2 bubbles s 1 for a total of 30 s (c), 90 s (d), and 180 s (e) before re-recording the spectrum. uring the rate of reduction of cytochrome c inhibitable by superoxide dismutase. Both membrane preparations showed some cytochrome c reductase activity (data not shown), but this was superoxide dismutase-insensitive. FRE1, therefore, appears to be incapable of generating significant amounts of O. 2, at least under the conditions used in the assay. Alignments of the predicted amino acid sequences for FRE1 and gp91 phox reveal a highly conserved region corresponding to the binding site for the FAD-isoalloxazine ring (Fig. 1A). Furthermore, in the reduced minus oxidized spectra for the yeast plasma membranes, a shallow flavin trough appears at a wavelength of roughly 450 nm, adjacent to the peak (Fig. 2). Extracts from the yeast membrane preparations were analyzed for FAD to determine whether, like flavocytochrome b 558 of NADPH oxidase, the FRE1 cytochrome carries a noncovalently bound flavin group. Membranes from strain 352-FRE1 were consistently found to contain 2 3 times more FAD than those of the deletion mutant and wild-type S. cerevisiae (Table I). Plasma membranes from strains fre1::leu2 and 352-FRE1 were tested for INT reductase activity. It has been shown that neutrophil NADPH oxidase is capable of reducing INT in a manner that is independent of O. 2 production (Cross et al., 1994) and there is mounting evidence that INT accepts electrons directly from the flavin center (Cross and Curnutte, 1995; Cross et al., 1995a). Membranes from strain 352-FRE1 demonstrated INT reductase activity that was 5-fold higher than that of the deletion mutant and independent of exogenous FAD (Table III), implying that, like NADPH oxidase, the yeast ferric reductase possesses diaphorase activity. This may be a further indication that FRE1 carries a flavin group. DISCUSSION The correlation between the magnitude of the reduced minus oxidized spectrum and the level of ferric reductase activity in the yeast strains provides strong evidence that FRE1 is a plasma membrane cytochrome b. Whether the protein also carries a flavin group is rather more equivocal. The homology between FRE1 and gp91 phox at the putative FAD-binding site, together with the raised levels of noncovalently bound FAD in the plasma membranes from strain 352-FRE1 suggest that FRE1 is likely to be a flavocytochrome, as does its apparent INT reductase activity. However, if the heme:fad ratio is calculated for the data presented in Table I (the concentration of heme and FAD in the deletion mutant having first been subtracted as an indication of background levels), a seemingly implausible value of 18.6:1 is obtained. This compares with an apparent ratio of 2:1 for flavocytochrome b 558 (Segal et al., 1992), which correlates with the two electron transfer catalyzed by this protein. Higher heme to FAD ratios have been reported (Pealing et al., 1992), but a partial loss of the FAD cofactor during membrane purification may provide a more satisfactory explanation for the nonstoichiometric increase in FAD with heme in strain 352-FRE1. Alternatively the flavin group may reside within a separate, loosely associated membrane protein. The very low midpoint potential and the apparent oxygen reactivity of the FRE1 protein suggested a mechanism whereby Fe 3 is reduced to the ferrous form by O 2.. A mechanism of iron reduction utilizing a small intermediate would explain the ability of the FRE1 reductase to reduce chemically varied substrates (ferric citrate, ferric-edta, ferricyanide, ferrioxamine B, Cu 2, cytochrome c, nitro blue tetrazolium, resazurin c) (Lesuisse and Labbe, 1994). However, O 2. was not detected in the cell free assay. This may reflect the lability of a critical cofactor that was lost during membrane purification. Alternatively, the absence of O 2. production by the yeast membranes could result from the lack of one or more essential cytosolic proteins. Generation of O 2. by NADPH oxidase in a cell free assay requires three cytosolic factors, p47 phox, p67 phox, and p21 rac1, together with an amphipathic activating reagent such as SDS or arachidonic acid. NADPH is the most probable electron donor for the FRE1 ferric reductase. It donated electrons in the INT reductase assay and in potentiometric titrations, was a good reductant at higher potentials although it failed to drive the potential below about 225 mv, apparently because of the inherent instability of the protein. Furthermore, motifs likely to be involved in NADP(H) binding have been identified at positions analogous to the NADPH binding sites of neutrophil NADPH oxidase (Fig. 1). Although the human NADPH oxidase is a heterodimer comprising both and subunits, both the NADPH and FAD binding sites, together with at least one of the hemes, are accommodated entirely within the subunit, suggesting that the subunit may have a regulatory function. For the yeast FRE1 reductase, regulation occurs at the level of control of transcription of the FRE1 gene, and a regulatory subunit may not, therefore, be required. Evidence regarding the presence of a second protein subunit for the FRE1 reductase has been equivocal. Expression of the FRE1 genomic clone on a high copy number plasmid leads to increased surface ferric reductase, indicating that a second subunit, if present, is not limiting for reductase activity. Searches for reductase deficient mutants have led to repeated identification of mutant alleles of FRE1.

5 14244 Yeast FRE1 Ferric Reductase, a Cytochrome b However, a single isolate of a mutant in the UTR1 gene (Swissprot accession no. P21373) was noted to be deficient in reductase. This gene product was not membrane associated and the sequence bore no resemblance to other sequences in the data base. Thus the role of the UTR1 protein in the FRE1 reductase system remains unclear. FRE1 shows homology not only to gp91 phox but also to FRE2 and to the plasma membrane ferric reductase of the evolutionarily distant yeast Schizosaccharomyces pombe, Frp1 (Roman et al., 1993). FRE1, FRE2, and Frp1 demonstrate functional and regulatory similarities and, furthermore, share with gp91 phox a similar hydropathic profile and clusters of amino acid identities at analogous positions. It is possible, therefore, that these three proteins represent a distinct family of membrane bound flavocytochromes capable of transporting electrons across the cell membrane. Acknowledgment We thank Dr. M. Fisher for his help with the FAD assays. REFERENCES Cross, A. R., and Curnutte, J. T. (1995) J. Biol. Chem. 270, Cross, A. R., Higson, F. K., Jones, O. T. G., Harper, A. M., and Segal, A. W. (1982) Biochem. J. 204, Cross, A. R., Yarchover, J. L., and Curnutte, J. T. (1994) J. Biol. Chem. 269, Cross, A. R., Heyworth, P. G., Rae, J., and Curnutte, J. T. (1995a) J. Biol. Chem. 207, Cross, A. R., Rae, J., and Curnutte, J. T. (1995b) J. Biol. Chem. 270, Dancis, A., Klausner, R. D., Hinnebusch, A. G., and Barriocanal, J. G. (1990) Mol. Cell. Biol. 10, Dancis, A., Roman, D. G., Anderson, G. J., Hinnebusch, A. G., and Klausner, R. D. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, Georgatsou, E., and Alexandraki, D. (1994) Mol. Cell. Biol. 14, Harper, A. M., Dunne, M. J., and Segal A. W. (1984) Biochem. J. 219, Lesuisse, E., and Labbe, P. (1989) J. Gen. Microbiol. 135, Lesuisse, E., and Labbe, P. (1994) in Metal Ions in Fungi (Winklemann, G., and Winge, D. R., eds) Vol. II, p. 160, Marcel Dekker, New York Morris, D. L., and Buckler, R. T. (1983) Methods Enzymol. 92, Pealing, S. L., Black, A. C., Manson, F. D., Ward, F. B., Chapman, S. K., and Reid, G. A. (1992) Biochemistry 31, Porra, R. J., and Jones, O. T. G. (1963) Biochem. J. 87, Roman, D. G., Dancis, A., Anderson, G. J., and Klausner, R. D. (1993) Mol. Cell. Biol. 13, Schaffner, W., and Weissmann, C. (1973) Anal. Biochem. 56, Segal, A. W., West, I., Wientjes, F., Nugent, J. H. A., Chavan, A. J., Haley, B., Garcia, R. C., Rosen, H., and Scrace, G. (1992) Biochem. J. 284, Serrano, R. (1988) Methods Enzymol. 157, Stearman, R., Yuan, D. S., Yamaguchi-Iwai, D. S., Klausner, R. D., and Dancis, A. (1996) Science 271, Taylor, W. R., Jones, D. T., and Segal, A. W. (1993) Prot. Sci. 2, Wientjes, F. B., and Segal, A. W. (1995) Cell Biol. 6,

Oxidative Phosphorylation

Oxidative Phosphorylation Oxidative Phosphorylation Energy from Reduced Fuels Is Used to Synthesize ATP in Animals Carbohydrates, lipids, and amino acids are the main reduced fuels for the cell. Electrons from reduced fuels are

More information

19 Oxidative Phosphorylation and Photophosphorylation W. H. Freeman and Company

19 Oxidative Phosphorylation and Photophosphorylation W. H. Freeman and Company 19 Oxidative Phosphorylation and Photophosphorylation 2013 W. H. Freeman and Company CHAPTER 19 Oxidative Phosphorylation and Photophosphorylation Key topics: Electron transport chain in mitochondria Capture

More information

The azoreductase of yeast cells: a new feature of an old enzyme

The azoreductase of yeast cells: a new feature of an old enzyme The azoreductase of yeast cells: a new feature of an old enzyme Patrícia A. Ramalho 1, Sandra Paiva 1, Artur Cavaco-Paulo 2, Margarida Casal 1, M. Teresa Ramalho 3, M. Helena Cardoso 1 1 Biology Department,

More information

Porphyrins: Chemistry and Biology

Porphyrins: Chemistry and Biology Porphyrins: Chemistry and Biology 20.109 Lecture 6 24 February, 2011 Goals Explore some essential roles of heme in biology Appreciate how ature has used the same cofactor to achieve diverse functions Gain

More information

Affinity Purification of Photosystem I from Chlamydomonas reinhardtii using a Polyhistidine Tag

Affinity Purification of Photosystem I from Chlamydomonas reinhardtii using a Polyhistidine Tag Affinity Purification of Photosystem I from Chlamydomonas reinhardtii using a Polyhistidine Tag Jonathan A. Brain Galina Gulis, Ph.D. 1 Kevin E. Redding, Ph.D. 2 Associate Professor of Chemistry Adjunct

More information

Electron transport chain chapter 6 (page 73) BCH 340 lecture 6

Electron transport chain chapter 6 (page 73) BCH 340 lecture 6 Electron transport chain chapter 6 (page 73) BCH 340 lecture 6 The Metabolic Pathway of Cellular Respiration All of the reactions involved in cellular respiration can be grouped into three main stages

More information

Aconitase Enzyme Activity Microplate Assay Kit

Aconitase Enzyme Activity Microplate Assay Kit ab109712 Aconitase Enzyme Activity Microplate Assay Kit Instructions for Use For the quantitative measurement of Aconitase activity in samples from all species This product is for research use only and

More information

Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin

Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin SUPPORTING INFORMATION Characterization of the DNA-mediated Oxidation of Dps, a Bacterial Ferritin Anna R. Arnold, Andy Zhou, and Jacqueline K. Barton Division of Chemistry and Chemical Engineering, California

More information

BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL Pages 48]-486

BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL Pages 48]-486 Vol. 41, No. 3, March 1997 BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL Pages 48]-486 INACTIVATION OF ACONITASE IN YEAST EXPOSED TO OXIDATIVE STRESS Keiko Murakami and Masataka Yoshino* Department

More information

Electron Transport Chain and Oxidative phosphorylation

Electron Transport Chain and Oxidative phosphorylation Electron Transport Chain and Oxidative phosphorylation So far we have discussed the catabolism involving oxidation of 6 carbons of glucose to CO 2 via glycolysis and CAC without any oxygen molecule directly

More information

Elementary tetrahelical protein design for diverse oxidoreductase functions

Elementary tetrahelical protein design for diverse oxidoreductase functions Title: Elementary tetrahelical protein design for diverse oxidoreductase functions Authors: Tammer A. Farid 1,4, Goutham Kodali 1,4, Lee A. Solomon 1,4, Bruce R. Lichtenstein 1,2, Molly M. Sheehan 1, Bryan

More information

ab Aconitase Enzyme Activity Microplate Assay Kit

ab Aconitase Enzyme Activity Microplate Assay Kit ab109712 Aconitase Enzyme Activity Microplate Assay Kit Instructions for Use For the quantitative measurement of Aconitase activity in samples from all species This product is for research use only and

More information

Kit for assay of thioredoxin

Kit for assay of thioredoxin FkTRX-02-V2 Kit for assay of thioredoxin The thioredoxin system is the major protein disulfide reductase in cells and comprises thioredoxin, thioredoxin reductase and NADPH (1). Thioredoxin systems are

More information

Cytochrome P 450 Unique family of heme proteins present in bacteria, fungi, insects, plants, fish, mammals and primates. Universal oxygenases (oxygen-

Cytochrome P 450 Unique family of heme proteins present in bacteria, fungi, insects, plants, fish, mammals and primates. Universal oxygenases (oxygen- Cytochrome P 450 Biochemistry Department Cytochrome P 450 Unique family of heme proteins present in bacteria, fungi, insects, plants, fish, mammals and primates. Universal oxygenases (oxygen-utilizing

More information

Isolation of Cytochrome C from Beef Heart BCHM 3100K-02

Isolation of Cytochrome C from Beef Heart BCHM 3100K-02 Isolation of Cytochrome C from Beef Heart BCHM 3100K-02 John T. Johnson April 15, 2013 Dates Performed: Partner: Instructor: 01-Mar-2013 08-Mar-2013 22-Mar-2013 29-Mar-2013 05-Apr-2013 Anthony Ferrante

More information

SUPPLEMENTARY MATERIAL

SUPPLEMENTARY MATERIAL SUPPLEMENTARY MATERIAL Purification and biochemical properties of SDS-stable low molecular weight alkaline serine protease from Citrullus Colocynthis Muhammad Bashir Khan, 1,3 Hidayatullah khan, 2 Muhammad

More information

GPx Equation 1 Æ R - O - H + GSSG + H2 O

GPx Equation 1 Æ R - O - H + GSSG + H2 O OXFORD BIOMEDICAL RESEARCH P.O. Box 522, Oxford MI 48371 USA USA: 800-692-4633 Fax: 248-852-4466 www.oxfordbiomed.com Colorimetric Assay for Cellular Glutathione Peroxidase Product No. FR 17 For Research

More information

<Supplemental information>

<Supplemental information> The Structural Basis of Endosomal Anchoring of KIF16B Kinesin Nichole R. Blatner, Michael I. Wilson, Cai Lei, Wanjin Hong, Diana Murray, Roger L. Williams, and Wonhwa Cho Protein

More information

Biologic Oxidation BIOMEDICAL IMPORTAN

Biologic Oxidation BIOMEDICAL IMPORTAN Biologic Oxidation BIOMEDICAL IMPORTAN Chemically, oxidation is defined as the removal of electrons and reduction as the gain of electrons. Thus, oxidation is always accompanied by reduction of an electron

More information

TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells

TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells Journal of Supramolecular Structure 4:441 (401)-447 (407) (1976) TRANSPORT OF AMINO ACIDS IN INTACT 3T3 AND SV3T3 CELLS. Binding Activity for Leucine in Membrane Preparations of Ehrlich Ascites Tumor Cells

More information

Chapter 14 - Electron Transport and Oxidative Phosphorylation

Chapter 14 - Electron Transport and Oxidative Phosphorylation Chapter 14 - Electron Transport and Oxidative Phosphorylation The cheetah, whose capacity for aerobic metabolism makes it one of the fastest animals Prentice Hall c2002 Chapter 14 1 14.4 Oxidative Phosphorylation

More information

6. C-type cytochrome, soluble and membrane protein

6. C-type cytochrome, soluble and membrane protein 185 6. C-type cytochrome, soluble and membrane protein analysis of Rhodobacter sp SW2 and Rhodopseudomonas palustris TIE-1 ABSTRACT The ability to grown on Fe(II) is thought to be a primitive metabolism

More information

MEMBRANE-BOUND ELECTRON TRANSFER AND ATP SYNTHESIS (taken from Chapter 18 of Stryer)

MEMBRANE-BOUND ELECTRON TRANSFER AND ATP SYNTHESIS (taken from Chapter 18 of Stryer) MEMBRANE-BOUND ELECTRON TRANSFER AND ATP SYNTHESIS (taken from Chapter 18 of Stryer) FREE ENERGY MOST USEFUL THERMODYNAMIC CONCEPT IN BIOCHEMISTRY Living things require an input of free energy for 3 major

More information

Work-flow: protein sample preparation Precipitation methods Removal of interfering substances Specific examples:

Work-flow: protein sample preparation Precipitation methods Removal of interfering substances Specific examples: Dr. Sanjeeva Srivastava IIT Bombay Work-flow: protein sample preparation Precipitation methods Removal of interfering substances Specific examples: Sample preparation for serum proteome analysis Sample

More information

Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives. Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics

Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives. Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics Carbonyls and Disease Alzheimer s Disease Degenerative brain

More information

Mammalian Membrane Protein Extraction Kit

Mammalian Membrane Protein Extraction Kit Mammalian Membrane Protein Extraction Kit Catalog number: AR0155 Boster s Mammalian Membrane Protein Extraction Kit is a simple, rapid and reproducible method to prepare cellular protein fractions highly

More information

User s Manual and Instructions

User s Manual and Instructions User s Manual and Instructions Mitochondria Activity Assay (Cytochrome C Oxidase Activity Assay) Kit Catalog Number: KC310100 Introduction Mitochondria are the eukaryotic subcellular organelles that contain

More information

Problem-solving Test: The Mechanism of Protein Synthesis

Problem-solving Test: The Mechanism of Protein Synthesis Q 2009 by The International Union of Biochemistry and Molecular Biology BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION Vol. 37, No. 1, pp. 58 62, 2009 Problem-based Learning Problem-solving Test: The Mechanism

More information

Superoxide Dismutase Kit

Superoxide Dismutase Kit Superoxide Dismutase Kit Catalog Number: 7500-100-K Reagent kit for the analysis of Superoxide Dismutase in cell extracts. Sufficient reagents for 100 experimental tests, 50 negative controls, and 50 positive

More information

Human Oxidized LDL ELISA Kit (MDA-LDL Quantitation), General

Human Oxidized LDL ELISA Kit (MDA-LDL Quantitation), General Human Oxidized LDL ELISA Kit (MDA-LDL Quantitation), General For the detection and quantitation of human OxLDL in plasma, serum or other biological fluid samples Cat. No. KT-959 For Research Use Only.

More information

20X Buffer (Tube1) 96-well microplate (12 strips) 1

20X Buffer (Tube1) 96-well microplate (12 strips) 1 PROTOCOL MitoProfile Rapid Microplate Assay Kit for PDH Activity and Quantity (Combines Kit MSP18 & MSP19) 1850 Millrace Drive, Suite 3A Eugene, Oregon 97403 MSP20 Rev.1 DESCRIPTION MitoProfile Rapid Microplate

More information

APPENDIX Heparin 2 mg heparin was dissolved in 0.9 % NaCl (10 ml). 200 µl of heparin was added to each 1 ml of blood to prevent coagulation.

APPENDIX Heparin 2 mg heparin was dissolved in 0.9 % NaCl (10 ml). 200 µl of heparin was added to each 1 ml of blood to prevent coagulation. APPENDIX 1 Preparation of reagents 1.1. Preparation of dosing solution Nonylphenol 15 mg of Nonylphenol was dissolved in olive oil (10 ml) and used as stock solution. The stock solution was serially diluted

More information

BIOENERGETICS. 1. Detection of succinate dehydrogenase activity in liver homogenate using artificial electron acceptors.

BIOENERGETICS. 1. Detection of succinate dehydrogenase activity in liver homogenate using artificial electron acceptors. BIOENERGETICS Problems to be prepared: 1. Methods of enzymes activity assessment, the role of artificial electron acceptors and donors. 2. Reactions catalyzed by malate dehydrogenase, succinate dehydrogenase,

More information

Tivadar Orban, Beata Jastrzebska, Sayan Gupta, Benlian Wang, Masaru Miyagi, Mark R. Chance, and Krzysztof Palczewski

Tivadar Orban, Beata Jastrzebska, Sayan Gupta, Benlian Wang, Masaru Miyagi, Mark R. Chance, and Krzysztof Palczewski Structure, Volume Supplemental Information Conformational Dynamics of Activation for the Pentameric Complex of Dimeric G Protein-Coupled Receptor and Heterotrimeric G Protein Tivadar Orban, Beata Jastrzebska,

More information

بسم هللا الرحمن الرحيم

بسم هللا الرحمن الرحيم بسم هللا الرحمن الرحيم -Please refer to the slides from (4-20) -Slides (4, 5) -Oxidative phosphorylation consists of 2 parts: 1.electron transport chain (series of electron transport proteins much filled

More information

Lecture Sixteen: METABOLIC ENERGY: [Based on GENERATION Chapter 15

Lecture Sixteen: METABOLIC ENERGY: [Based on GENERATION Chapter 15 Lecture Sixteen: METABOLIC ENERGY: [Based on GENERATION Chapter 15 AND STORAGE Berg, (Figures in red are for the 7th Edition) Tymoczko (Figures in Blue are for the 8th Edition) & Stryer] Two major questions

More information

ab MitoTox Complex I OXPHOS Activity Microplate Assay

ab MitoTox Complex I OXPHOS Activity Microplate Assay ab109903 MitoTox Complex I OXPHOS Activity Microplate Assay Instructions for Use For the quantitative measurement of Complex I activity in Bovine samples This product is for research use only and is not

More information

Roti -Quant universal

Roti -Quant universal Roti -Quant universal Colorimetric protein concentration analysis 0120.1 A. The kit contains Roti -Quant universal Reagenz 1 (0118): 500 ml (0120.1) / 200 ml (0120.2) Danger H318-H315 P280- P305+P351+P338-P310

More information

P450 CYCLE. All P450s follow the same catalytic cycle of;

P450 CYCLE. All P450s follow the same catalytic cycle of; P450 CYCLE All P450s follow the same catalytic cycle of; 1. Initial substrate binding 2. First electron reduction 3. Oxygen binding 4. Second electron transfer 5 and 6. Proton transfer/dioxygen cleavage

More information

human Total Cathepsin B Catalog Number: DY2176

human Total Cathepsin B Catalog Number: DY2176 human Total Cathepsin B Catalog Number: DY2176 This DuoSet ELISA Development kit contains the basic components required for the development of sandwich ELISAs to measure natural and recombinant human Total

More information

Supplementary figure legends

Supplementary figure legends Supplementary figure legends Fig. S1. Lineweaver-Burk plot of putrescine uptake by YeeF. An overnight culture of SK629 was inoculated in 100-mL LBG medium in 500-mL Erlenmeyer flasks. The medium was supplemented

More information

OxisResearch A Division of OXIS Health Products, Inc.

OxisResearch A Division of OXIS Health Products, Inc. OxisResearch A Division of OXIS Health Products, Inc. BIOXYTECH pl GPx Enzyme Immunoassay Assay for Human Plasma Glutathione Peroxidase For Research Use Only. Not For Use In Diagnostic Procedures. Catalog

More information

2017/18 PRODUCT CATALOGUE SCHIZOSACCHAROMYCES POMBE

2017/18 PRODUCT CATALOGUE SCHIZOSACCHAROMYCES POMBE 2017/18 PRODUCT CATALOGUE SCHIZOSACCHAROMYCES POMBE CONTENTS 3 Schizosaccharomyces Pombe 4 Complex Media 5 YE Broth 5 YE Agar 6 YES Broth 7 YES Agar 8 YSO Broth 9 YSO Agar 10 ME Broth 11 ME Agar 22 SP

More information

Communication. Identification of Methionine N -Acetyltransferase from Saccharomyces cerevisiae

Communication. Identification of Methionine N -Acetyltransferase from Saccharomyces cerevisiae Communication THE JOURNAL OP BIOLOGICAL CHEMISTRY Vol. 265, No. 7, Issue of March 5, pp. 3603-3606,lSSO 0 1990 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U. S. A. Identification

More information

BIOL 347L Laboratory Three

BIOL 347L Laboratory Three Introduction BIOL 347L Laboratory Three Osmosis in potato and carrot samples Osmosis is the movement of water molecules through a selectively permeable membrane into a region of higher solute concentration,

More information

Supporting Information for:

Supporting Information for: Supporting Information for: Methylerythritol Cyclodiphosphate (MEcPP) in Deoxyxylulose Phosphate Pathway: Synthesis from an Epoxide and Mechanisms Youli Xiao, a Rodney L. Nyland II, b Caren L. Freel Meyers

More information

OxiSelect Hydrogen Peroxide Assay Kit (Colorimetric)

OxiSelect Hydrogen Peroxide Assay Kit (Colorimetric) Product Manual OxiSelect Hydrogen Peroxide Assay Kit (Colorimetric) Catalog Number STA-343 5 assays FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Oxidative stress is a physiological

More information

Supporting Information

Supporting Information Supporting Information Dauvillée et al. 10.1073/pnas.0907424106 Fig. S1. Iodine screening of the C. cohnii mutant bank. Each single colony was grown on rich-medium agar plates then vaporized with iodine.

More information

Western Immunoblotting Preparation of Samples:

Western Immunoblotting Preparation of Samples: Western Immunoblotting Preparation of Samples: Total Protein Extraction from Culture Cells: Take off the medium Wash culture with 1 x PBS 1 ml hot Cell-lysis Solution into T75 flask Scrap out the cells

More information

N α -Acetylation of yeast ribosomal proteins and its effect on protein synthesis

N α -Acetylation of yeast ribosomal proteins and its effect on protein synthesis JOURNAL OF PROTEOMICS 74 (2011) 431 441 available at www.sciencedirect.com www.elsevier.com/locate/jprot N α -Acetylation of yeast ribosomal proteins and its effect on protein synthesis Masahiro Kamita

More information

Luminescent platforms for monitoring changes in the solubility of amylin and huntingtin in living cells

Luminescent platforms for monitoring changes in the solubility of amylin and huntingtin in living cells Electronic Supplementary Material (ESI) for Molecular BioSystems. This journal is The Royal Society of Chemistry 2016 Contents Supporting Information Luminescent platforms for monitoring changes in the

More information

Nature Methods: doi: /nmeth Supplementary Figure 1

Nature Methods: doi: /nmeth Supplementary Figure 1 Supplementary Figure 1 Subtiligase-catalyzed ligations with ubiquitin thioesters and 10-mer biotinylated peptides. (a) General scheme for ligations between ubiquitin thioesters and 10-mer, biotinylated

More information

Electron Transport and oxidative phosphorylation (ATP Synthesis) Dr. Howaida Nounou Biochemistry department Sciences college

Electron Transport and oxidative phosphorylation (ATP Synthesis) Dr. Howaida Nounou Biochemistry department Sciences college Electron Transport and oxidative phosphorylation (ATP Synthesis) Dr. Howaida Nounou Biochemistry department Sciences college The Metabolic Pathway of Cellular Respiration All of the reactions involved

More information

Plasmonic blood glucose monitor based on enzymatic. etching of gold nanorods

Plasmonic blood glucose monitor based on enzymatic. etching of gold nanorods Plasmonic blood glucose monitor based on enzymatic etching of gold nanorods Xin Liu, Shuya Zhang, Penglong Tan, Jiang Zhou, Yan Huang, Zhou Nie* and Shouzhuo Yao State Key Laboratory of Chemo/Biosensing

More information

Date... Name... Group... Urine sample (Tube No 2)

Date... Name... Group... Urine sample (Tube No 2) Date... Name... Group... Instructions for the practical lesson on biochemistry Topic: Non-protein nitrogen compounds Task 1: Estimation of creatinine in serum and urine 1. Trichloroacetic acid 1.22 mol/l

More information

Anaerobically Grown Shewanella putrefaciens MR-1

Anaerobically Grown Shewanella putrefaciens MR-1 JOURNAL OF BACTERIOLOGY, June 1992, p. 3429-3438 0021-9193/92/113429-10$02.00/0 Copyright 1992, American Society for Microbiology Vol. 174, No. 11 Localization of Cytochromes to the Outer Membrane of Anaerobically

More information

Vocabulary. Chapter 20: Electron Transport and Oxidative Phosphorylation

Vocabulary. Chapter 20: Electron Transport and Oxidative Phosphorylation Vocabulary ATP Synthase: the enzyme responsible for production of ATP in mitochondria Chemiosmotic Coupling: the mechanism for coupling electron transport to oxidative phosphorylation; it requires a proton

More information

Photosynthesis: The light Reactions. Dr. Obaidur Rahman NSU

Photosynthesis: The light Reactions. Dr. Obaidur Rahman NSU Photosynthesis: The light Reactions Dr. Obaidur Rahman NSU When Molecules Absorb or Emit Light, They Change Their Electronic State lowest-energy, or ground state higher-energy, or excited, state extremely

More information

Electron Transfer Chain

Electron Transfer Chain Molecular Biochemistry I Electron Transfer Chain Contents of this page: Electron transfer reactions Electron carriers Respiratory chain Electron Transfer is discussed on p. 555-556, 571-574 and 802-820

More information

Human Myeloperoxidase ELISA KIT

Human Myeloperoxidase ELISA KIT Human Myeloperoxidase ELISA KIT Cat. No.:DEIA6443 Pkg.Size:96T Intended use The Myeloperoxidase (human), ELISA kit is a complete kit for the quantitative determination of MPO in biological fluids. General

More information

Oxidative Phosphorylation

Oxidative Phosphorylation Electron Transport Chain (overview) The NADH and FADH 2, formed during glycolysis, β- oxidation and the TCA cycle, give up their electrons to reduce molecular O 2 to H 2 O. Electron transfer occurs through

More information

Glutathione S-Transferase Assay Kit

Glutathione S-Transferase Assay Kit Glutathione S-Transferase Assay Kit Catalog Number KA1316 96 assays Version: 05 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Background... 3 Principle of the Assay...

More information

Aperto Cell Lysis and Protein Solubilization Users Manual

Aperto Cell Lysis and Protein Solubilization Users Manual Aperto Cell Lysis and Protein Solubilization Users Manual Revision 2 THIS MANUAL APPLIES TO THE FOLLOWING PRODUCTS: 3A8600 Aperto, 5X Cell Lysis Buffer. 20mL 3A8610 Aperto, 5X Cell Lysis Buffer. 100mL

More information

OVERVIEW OF RESPIRATION AND LOOSE ENDS. What agents? What war?

OVERVIEW OF RESPIRATION AND LOOSE ENDS. What agents? What war? 5.19.06 OVERVIEW OF RESPIRATION AND LOOSE ENDS What agents? What war? 1 Ubiquinone or Coenzyme Q: small hydrophobic molecule that can pick up or donate electrons The respiratory chain contains 3 large

More information

Table of Contents 2 Introduction 2 Principle 3 Materials Supplied 3 Storage 3 Materials Needed but Not Supplied 4 Reagent Preparation 5 Sample

Table of Contents 2 Introduction 2 Principle 3 Materials Supplied 3 Storage 3 Materials Needed but Not Supplied 4 Reagent Preparation 5 Sample Table of Contents 2 Introduction 2 Principle 3 Materials Supplied 3 Storage 3 Materials Needed but Not Supplied 4 Reagent Preparation 5 Sample Handling 7 Assay Procedure 8 Calculation of Results 9 Trouble

More information

A STUDY OF THE METABOLISM OF THEOBROMINE, THEOPHYLLINE, AND CAFFEINE IN MAN* Previous studies (1, 2) have shown that after the ingestion of caffeine

A STUDY OF THE METABOLISM OF THEOBROMINE, THEOPHYLLINE, AND CAFFEINE IN MAN* Previous studies (1, 2) have shown that after the ingestion of caffeine A STUDY OF THE METABOLISM OF THEOBROMINE, THEOPHYLLINE, AND CAFFEINE IN MAN* BY HERBERT H. CORNISH AND A. A. CHRISTMAN (From the Department of Biological Chemistry, Medical School, University of Michigan,

More information

SUPPORTING INFORMATION. Lysine Carbonylation is a Previously Unrecognized Contributor. to Peroxidase Activation of Cytochrome c by Chloramine-T

SUPPORTING INFORMATION. Lysine Carbonylation is a Previously Unrecognized Contributor. to Peroxidase Activation of Cytochrome c by Chloramine-T Electronic Supplementary Material (ESI) for Chemical Science. This journal is The Royal Society of Chemistry 2019 SUPPORTING INFORMATION Lysine Carbonylation is a Previously Unrecognized Contributor to

More information

Coupled, interconnecting reactions

Coupled, interconnecting reactions Metabolism: Basic concepts Hand-out for the CBT version November 2011 This module is based on 'Biochemistry' by Berg, Tymoczko and Stryer, seventh edition (2011), Chapter 15: Metabolism: Basic Concepts

More information

Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit

Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit PROTOCOL Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit DESCRIPTION Mitochondrial Trifunctional Protein (TFP) Protein Quantity Microplate Assay Kit Sufficient materials

More information

OxiSelect Human Oxidized LDL ELISA Kit (OxPL-LDL Quantitation)

OxiSelect Human Oxidized LDL ELISA Kit (OxPL-LDL Quantitation) Product Manual OxiSelect Human Oxidized LDL ELISA Kit (OxPL-LDL Quantitation) Catalog Number STA-358 96 assays FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Lipoproteins are submicroscopic

More information

For the quantitative measurement of ATP Synthase Specific activity in samples from Human, Rat and Cow

For the quantitative measurement of ATP Synthase Specific activity in samples from Human, Rat and Cow ab109716 ATP Synthase Specific Activity Microplate Assay Kit Instructions for Use For the quantitative measurement of ATP Synthase Specific activity in samples from Human, Rat and Cow This product is for

More information

Supplementary Information

Supplementary Information Supplementary Information Archaeal Elp3 catalyzes trna wobble uridine modification at C5 via a radical mechanism Kiruthika Selvadurai, Pei Wang, Joseph Seimetz & Raven H Huang* Department of Biochemistry,

More information

AMPK Assay. Require: Sigma (1L, $18.30) A4206 Aluminum foil

AMPK Assay. Require: Sigma (1L, $18.30) A4206 Aluminum foil AMPK Assay Require: Acetone Sigma (1L, $18.30) A4206 Aluminum foil Ammonium sulfate Fisher BP212R-1 AMP Sigma A1752 ATP Sigma A6144 (alt. use A7699) Beta-mercaptoethanol Sigma M6250 (alt. use M7154) Bio-Rad

More information

Papain proteolysis releases a soluble NADPH dependent diaphorase activity from bovine neutrophil membranes

Papain proteolysis releases a soluble NADPH dependent diaphorase activity from bovine neutrophil membranes FEBS Letters 424 (1998) 188^192 FEBS 19938 Papain proteolysis releases a soluble NADPH dependent diaphorase activity from bovine neutrophil membranes Jianrong Li 1, Leanne M. Kon, Richard John Guillory*

More information

ab ATP Synthase Enzyme Activity Microplate Assay Kit

ab ATP Synthase Enzyme Activity Microplate Assay Kit ab109714 ATP Synthase Enzyme Activity Microplate Assay Kit Instructions for Use For the quantitative measurement of ATP Synthase activity in samples from Human, Rat and Cow This product is for research

More information

Oxidative phosphorylation & Photophosphorylation

Oxidative phosphorylation & Photophosphorylation Oxidative phosphorylation & Photophosphorylation Oxidative phosphorylation is the last step in the formation of energy-yielding metabolism in aerobic organisms. All oxidative steps in the degradation of

More information

BioChem Course Outline

BioChem Course Outline BioChem 330 - Course Outline Metabolism and Bioenergetics (II) ENZYME CATALYSIS: kinetic constants k cat, K m Catalytic strategies, the serine proteases CATABOLISM (breakdown) Carbohydrates Glycolysis

More information

Chapter 2 Transport Systems

Chapter 2 Transport Systems Chapter 2 Transport Systems The plasma membrane is a selectively permeable barrier between the cell and the extracellular environment. It permeability properties ensure that essential molecules such as

More information

Alkaline Phosphatase Assay Kit (Fluorometric)

Alkaline Phosphatase Assay Kit (Fluorometric) Alkaline Phosphatase Assay Kit (Fluorometric) Catalog Number KA0820 500 assays Version: 02 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Background... 3 General Information...

More information

Hong-qi Sun, Xue-mei Lu, Pei-ji Gao* State Key Laboratory of Microbial Technology, Shandong University, Jinan , China.

Hong-qi Sun, Xue-mei Lu, Pei-ji Gao* State Key Laboratory of Microbial Technology, Shandong University, Jinan , China. Brazilian Journal of Microbiology (2011) 42: 410-414 ISSN 1517-8382 THE EXPLORATION OF THE ANTIBACTERIAL MECHANISM OF FE 3+ AGAINST BACTERIA Hong-qi Sun, Xue-mei Lu, Pei-ji Gao* State Key Laboratory of

More information

Note: During 30 minute incubation; proceed thru appropriate sections below (e.g. sections II, III and V).

Note: During 30 minute incubation; proceed thru appropriate sections below (e.g. sections II, III and V). LEGEND MAX β Amyloid x 40 LEGEND MAX β Amyloid x 40 ELISA Kit Components and Protocol Kit Components Capture Antibody Coated Plate 1 stripwell plate 1 40 Standard (2) 20μg vial 5X Wash Buffer 125mL Standard

More information

8 Suppression Analysis

8 Suppression Analysis Genetic Techniques for Biological Research Corinne A. Michels Copyright q 2002 John Wiley & Sons, Ltd ISBNs: 0-471-89921-6 (Hardback); 0-470-84662-3 (Electronic) 8 Suppression Analysis OVERVIEW Suppression

More information

Procaspase-3. Cleaved caspase-3. actin. Cytochrome C (10 M) Z-VAD-fmk. Procaspase-3. Cleaved caspase-3. actin. Z-VAD-fmk

Procaspase-3. Cleaved caspase-3. actin. Cytochrome C (10 M) Z-VAD-fmk. Procaspase-3. Cleaved caspase-3. actin. Z-VAD-fmk A HeLa actin - + + - - + Cytochrome C (1 M) Z-VAD-fmk PMN - + + - - + actin Cytochrome C (1 M) Z-VAD-fmk Figure S1. (A) Pan-caspase inhibitor z-vad-fmk inhibits cytochrome c- mediated procaspase-3 cleavage.

More information

Chemistry 5.07 Problem Set 5 (redox cofactors and oxidation reactions; carbohydrate chemistry, and introduction to metabolism)

Chemistry 5.07 Problem Set 5 (redox cofactors and oxidation reactions; carbohydrate chemistry, and introduction to metabolism) Chemistry 5.07 Problem Set 5 (redox cofactors and oxidation reactions; carbohydrate chemistry, and introduction to metabolism) Problem 1 Succinate dehydrogenase (SDH) is a heterotetramer enzyme complex

More information

Myeloperoxidase (MPO) ELISA Stool, Urine KIT

Myeloperoxidase (MPO) ELISA Stool, Urine KIT Myeloperoxidase (MPO) ELISA Stool, Urine KIT Cat. No.:DEIA6211 Pkg.Size:96T Intended use The Myeloperoxidase Assay is intended for the quantitative determination of Myeloperoxidase in urine and stool,

More information

Glycosyltransferase Activity Kit

Glycosyltransferase Activity Kit Glycosyltransferase Activity Kit Catalog Number EA001 This package insert must be read in its entirety before using this product. For research use only. Not for use in diagnostic procedures. TABLE OF CONTENTS

More information

Electron Transport System Supplemental Reading. Key Concepts PETER MITCHELL'S CHEMIOSMOTIC THEORY

Electron Transport System Supplemental Reading. Key Concepts PETER MITCHELL'S CHEMIOSMOTIC THEORY Electron Transport System Supplemental Reading Key Concepts - PETER MITCHELL'S CHEMIOSMOTIC THEORY - THE ELECTRON TRANSPORT SYSTEM IS A SERIES OF COUPLED REDOX REACTIONS Complex I: NADH-ubiquinone oxidoreductase

More information

BabyBio IMAC columns DATA SHEET DS

BabyBio IMAC columns DATA SHEET DS BabyBio IMAC columns DATA SHEET DS 45 655 010 BabyBio columns for Immobilized Metal Ion Affinity Chromatography (IMAC) are ready-to-use for quick and easy purification of polyhistidine-tagged (His-tagged)

More information

An Investigative Study of Reactions Involving Glucosinolates and Isothiocyanates

An Investigative Study of Reactions Involving Glucosinolates and Isothiocyanates An Investigative Study of Reactions Involving Glucosinolates and Isothiocyanates Alzea Chrisel H. Alea 1, Diane Elaine T. Co 2 and Marissa G Noel 3* 1,2,3Chemistry Department, De La Salle University, 2401

More information

BIOLOGY 103 Spring 2001 MIDTERM LAB SECTION

BIOLOGY 103 Spring 2001 MIDTERM LAB SECTION BIOLOGY 103 Spring 2001 MIDTERM NAME KEY LAB SECTION ID# (last four digits of SS#) STUDENT PLEASE READ. Do not put yourself at a disadvantage by revealing the content of this exam to your classmates. Your

More information

Globular proteins Proteins globular fibrous

Globular proteins Proteins globular fibrous Globular proteins Globular proteins Proteins are biochemical compounds consisting of one or more polypeptides typically folded into a globular or fibrous form in a biologically functional way. Globular

More information

THE UNIVERSITY OF NEWCASTLE- DISCIPLINE OF MEDICAL BIOCHEMISTRY

THE UNIVERSITY OF NEWCASTLE- DISCIPLINE OF MEDICAL BIOCHEMISTRY Page: 1 of 5 1. Risk Assessment: This Risk Assessment is to be used as a general guide and as such, cannot accommodate all the varying factors that may be encountered when using this procedure. Therefore,

More information

Calcineurin Cellular Activity Assay Kit, Colorimetric Cat. No

Calcineurin Cellular Activity Assay Kit, Colorimetric Cat. No User Protocol 207007 Rev. 27-July-04 JSW Page 1 of 9 Calcineurin Cellular Activity Assay Kit, Colorimetric Cat. No. 207007 Introduction Calcineurin (CaN) is a neuronal form of the widely distributed Ca

More information

Enzyme activity Page 1 of 8

Enzyme activity Page 1 of 8 Enzyme activity Page 1 of 8 Contains: - protease - L-glutaminase - Leucine aminopeptidase - sucrase - amylase - cellulase - lipase - catalase - carboxypeptidase Protease Assay Based on: Frankena J., van

More information

MyBioSource.com. OxiSelect Ferric Reducing Antioxidant Power (FRAP) Assay Kit. Product Manual. Catalog Number

MyBioSource.com. OxiSelect Ferric Reducing Antioxidant Power (FRAP) Assay Kit. Product Manual. Catalog Number Product Manual OxiSelect Ferric Reducing Antioxidant Power (FRAP) Assay Kit Catalog Number Introduction Oxidative stress is a physiological condition where there is an imbalance between concentrations

More information

Chapter 8 Mitochondria and Cellular Respiration

Chapter 8 Mitochondria and Cellular Respiration Chapter 8 Mitochondria and Cellular Respiration Cellular respiration is the process of oxidizing food molecules, like glucose, to carbon dioxide and water. The energy released is trapped in the form of

More information

Human Hemoglobin Colorimetric Detection Kit

Human Hemoglobin Colorimetric Detection Kit Human Hemoglobin Colorimetric Detection Kit CATALOG NO: IRAAKT2522 LOT NO: SAMPLE INTENDED USE The Hemoglobin detection kit is designed to quantitatively measure all forms of hemoglobin present in blood

More information

Metals in Redox Biology C O R Y B O O N E, C E C I L I A H A G E R T, Q I A N G MA R E D O X - C O U R S E

Metals in Redox Biology C O R Y B O O N E, C E C I L I A H A G E R T, Q I A N G MA R E D O X - C O U R S E Metals in Redox Biology C O R Y B O O N E, C E C I L I A H A G E R T, Q I A N G MA R E D O X - C O U R S E 2 0 1 2 Metals Producing ROS M A Q I A N G ROS as a class includes superoxide radical anion (O

More information

III. TOXICOKINETICS. Studies relevant to the toxicokinetics of inorganic chloramines are severely

III. TOXICOKINETICS. Studies relevant to the toxicokinetics of inorganic chloramines are severely III. TOXICOKINETICS Introduction Studies relevant to the toxicokinetics of inorganic chloramines are severely limited. However, studies done with various chlorinated amino compounds (including organic

More information

Product Manual. Human LDLR ELISA Kit. Catalog Number. FOR RESEARCH USE ONLY Not for use in diagnostic procedures

Product Manual. Human LDLR ELISA Kit. Catalog Number. FOR RESEARCH USE ONLY Not for use in diagnostic procedures Product Manual Human LDLR ELISA Kit Catalog Number STA-386 96 assays FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Cholesterol is an essential component of cellular membranes,

More information