Association of the Mouse Infertility Factor DAZL1 with Actively Translating Polyribosomes 1

Size: px
Start display at page:

Download "Association of the Mouse Infertility Factor DAZL1 with Actively Translating Polyribosomes 1"

Transcription

1 BIOLOGY OF REPRODUCTION 62, (2000) Association of the Mouse Infertility Factor DAZL1 with Actively Translating Polyribosomes 1 Shanli Tsui, 3 Tiane Dai, 3 Stephen T. Warren, 4 Eduardo C. Salido, 5 and Pauline H. Yen 2,3 Department of Pediatrics, 3 Harbor-UCLA Medical Center, Torrance, California Howard Hughes Medical Institute, 4 Departments of Biochemistry, Pediatrics and Genetics, Emory University School of Medicine, Atlanta, Georgia Unidad de Investigacion, 5 Hospital Universitario de Canarias and Department of Pathology, Universidad de La Laguna, E Tenerife, Spain ABSTRACT The DAZ (Deleted in AZoospermia) gene family was isolated from a region of the human Y chromosome long arm that is deleted in about 10% of infertile men with idiopathic azoospermia. DAZ and an autosomal DAZ-like gene, DAZL1, are expressed in germ cells only. They encode proteins with an RNA recognition motif and with either a single copy (in DAZL1) or multiple copies (in DAZ) of a DAZ repeat. A role for DAZL1 and DAZ in spermatogenesis is supported by their homology to a Drosophila male infertility protein Boule and by sterility of Dazl1 knock-out mice. The biological function of these proteins remains unknown. We found that DAZL1 and DAZ bound similarly to various RNA homopolymers in vitro. We also used an antibody against the human DAZL1 to determine the subcellular localization of DAZL1 in mouse testis. The sedimentation profiles of DAZL1 in sucrose gradients indicate that DAZL1 is associated with polyribosomes, and further capture of DAZL1 on oligo(dt) beads demonstrates that the association is mediated through the binding of DAZL1 to poly(a) RNA. Our results suggest that DAZL1 is involved in germ-cell specific regulation of mrna translation. INTRODUCTION A requirement of the Y chromosome long arm (Yq) for normal spermatogenesis was recognized more than two decades ago when six infertile men were found to have Yq deletions [1]. More recent molecular screening has detected Yq microdeletions in 10 15% of males with idiopathic azoospermia [2 4]. The DAZ (Deleted in AZoospermia) gene family was isolated from one of the deleted regions [5]. There are seven DAZ genes clustered within a 1-Mbp region in interval 6 of Yq [6]. DAZ homologues are present on the Y chromosomes of only great apes and old-world monkeys [7], yet all mammals contain a single-copy DAZlike gene, DAZL1, on their autosomes [7 12]. DAZ and DAZL1 encode proteins with an RNA recognition motif (RRM) and varying numbers of copies of a DAZ repeat. DAZ has 8 24 copies of the repeat, and DAZL1 has a single copy [5, 13]. DAZ and DAZL1 have 85% sequence similarity over most of their lengths, including the RRM 1 This work was supported by NIH grants HD28009 and HD36347 (P.H.Y.). S.T.W. is an Investigator of the Howard Hughes Medical Institute. 2 Correspondence: Pauline Yen, Division of Medical Genetics, Harbor- UCLA Medical Center, 1124 W. Carson Street, Torrance, CA FAX: ; pyen@rei.edu Received: 13 October First decision: 5 November Accepted: 7 January by the Society for the Study of Reproduction, Inc. ISSN: domain and the DAZ repeats, but they have different C- terminal sequences due to a frame shift downstream of the DAZ repeat region. It was proposed that the DAZ genes originated from translocation of an ancestral DAZL1 gene to the Y chromosome, followed by amplification and pruning [10]. A role for DAZ and DAZL1 in spermatogenesis is supported by their exclusive expression in germ cells, their homology to a Drosophila male infertility gene, boule [14], and the sterility of Dazl1 knock-out mice [15]. Male flies with the boule mutation have morphologically normal primary spermatocytes, which fail to enter into meiotic division, suggesting that boule is required for the G2/M transition. Dazl1 knock-out mice are sterile in both sexes, and male mice exhibit a spermatogenic defect significantly different from that of boule flies [15]. The seminiferous tubules contain only a few premeiotic spermatogonia that rarely progress into meiosis, suggesting that Dazl1 is required for both the development and the maintenance of the germ cells. The spermatogenic defects of boule flies and Dazl1 knock-out mice were partially rescued by a Xenopus Xdazl gene [16] and a human DAZ gene [17], respectively, indicating conservation of the function of DAZ and Dazl1. The biological function of DAZ and DAZL1 is unknown. Immunostaining of mouse testicular sections detected DAZL1 abundantly in the cytoplasm of pachytene spermatocytes and to a lesser degree in the cytoplasm of type- B spermatogonia and preleptotene and zygotene spermatocytes [15]. The whereabouts of the human DAZ protein is less certain. It has been localized either to late spermatids and sperm tails [18] or to spermatogonia and primary spermatocytes [19]. In order to gain insights into their function, we studied the ability of DAZ and DAZL1 to bind RNA molecules in vitro and determined the subcellular localization of DAZL1 in mouse testis. MATERIALS AND METHODS Generation of Anti-DAZL1 Antibody A 229-base pair Sau3AI fragment encoding the last 76 amino acid residues of DAZL1 was isolated from a human DAZL1 cdna clone f2 [11] and cloned into the BamHI site of an expression vector pet32b (Novagen, Madison, WI). The construct was introduced into Escherichia coli to direct the synthesis of a fusion protein between thioredoxin and DAZL1, which was purified on His-Bind metal chelation resins according to the manufacturer s manual, and injected into rabbits to generate antibody. In Vitro RNA Binding Assay S 35 -Labeled proteins were synthesized in vitro using the TNT Coupled Reticulocyte Lysate System (Promega, Mad-

2 1656 TSUI ET AL. ison, WI). In vitro binding of the labeled proteins to RNA homopolymers was carried out according to Siomi et al. [20]. Briefly, equal amounts of S 35 -labeled proteins were added to 250 l of a 10% suspension of RNA homopolymers immobilized on agarose beads in a binding buffer containing 10 mm Tris ph 7.4, 2.5 mm MgCl 2, 0.5% Triton X-100, 2 mg/ml heparin, and 0.1 M NaCl unless otherwise stated. After rocking at 4 C for 10 min, the beads were washed 5 times with 1 ml of ice-cold binding buffer. Bound proteins were eluted by heating in 50 l of double-strength Laemmli sample buffer at 100 C for 5 min. After cooling on ice immediately afterward, the beads were spun down, and analysis of the supernatants on 10% SDS-PAGE gels was followed by autoradiography. Poly U, poly C, and poly G were purchased from Sigma (St. Louis, MO), and poly A was purchased from Pharmacia (Piscataway, NJ). Generation of Deletion Constructs of DAZ and DAZL1 Deletion constructs of DAZL1 and DAZ were generated from cdna clones DAZL1-f2 [11] and DAZ-e11 [13], respectively. Deletions were created either by using existing restriction sites within the coding regions or by polymerase chain reaction amplification of two regions followed by ligation. Correct joining at the junctions was verified by DNA sequencing. DAZL1-f2 encodes a protein of 295 residues, with the RRM domain spanning residues 32 to 115 and the DAZ repeat spanning 167 to 190. Deletion constructs DAZL-R1, DAZL-Z1, DAZL-C1, and DAZL-RZ1 encode proteins lacking residues , , , and plus , respectively. DAZ-e11 encodes a protein of 414 amino acid residues with 9 DAZ repeats. The RRM domain spans residues 32 to 115, and the DAZ repeat region spans 167 to 382. Deletion constructs DAZ-R1, DAZ-R2, DAZ-Z1, DAZ-Z2, and DAZ- RZ1 encode proteins lacking residues , , , , and plus , respectively. Trx-RRM and Trx-DAZ were constructed by cloning restriction fragments of DAZ cdna that contained the RRM domain and the DAZ repeats, respectively, in frame into the pet-32 vectors (Novagen). They encode fusion proteins between thioredoxin and DAZ fragments. Detection of DAZL1 in Mouse Tissue Extracts Tissues were removed from 2- to 3-mo-old mice immediately after they were killed. About 0.2 g of tissues were homogenized in 1 ml of an extraction buffer (EB) containing 20 mm Tris ph 7.5, 100 mm KCl, 5 mm MgCl 2, 0.3% Igepal CA-630 (Sigma), 40 U/ml ribonuclease inhibitor, 1 mm PMSF, and 1 g/ml each of aprotinin and leupeptin, in a Wheaton Potter-Elvehjem tissue grinder [21]. Homogenates were centrifuged at 1000 g for 10 min to remove cell debris and nuclei. The supernatants were centrifuged again at g for 10 min to generate a pellet containing largely mitochondria, and a postmitochondrial supernatant (PMS). The pellet was resuspended in EB to a final volume equal to that of PMS. Analysis of aliquots on 10% SDS-PAGE gels was followed by Western blotting with anti-dazl1 antibody [22]. Inhibition of Western Detection of DAZL1 Unlabeled DAZL1 was synthesized in vitro using the TNT Coupled Reticulocyte Lysate System (Promega). T3 and T7 RNA polymerase transcribed the Dazl1 cdna clone in the sense and antisense directions, respectively. Varying amounts of the in vitro synthesis mixtures were incubated with 2 l of anti-dazl1 antiserum in a total volume of 200 l of TBS-T buffer (50 mm Tris ph 7.4, 150 mm NaCl, 0.1% Tween-20) on ice for 1 h. The solutions were diluted to 4 ml with 10% milk in TBS-T before incubation with Western blot membranes containing equal amounts of liver and testis extracts. Sucrose Gradient Analysis of Mouse Testicular Extracts Mouse testicles were homogenized in either standard EB or modified EB in which 5 mm MgCl 2 was replaced with 30 mm EDTA ph 7.5, or KCl was added to a final concentration of 0.5 M. After centrifugation at g for 10 min, 0.5 ml of PMS was layered on top of 15 45% or 5 30% sucrose gradients in 20 mm Tris ph 7.5, 0.1 M KCl, and the same concentration of MgCl 2, EDTA, or KCl as in the extracts. After centrifugation in a Beckman SW41 rotor (Beckman Instruments, Palo Alto, CA) at rpm for 2hat4 C, 0.5-ml fractions were collected from the bottom, and the OD 254 was determined. Aliquots of every other fraction were analyzed on 10% SDS-PAGE gels and then by Western blotting with antibodies against DAZL1 and the fragile X mental retardation protein FMRP, and a human autoantibody against ribosomal P antigens (ImmunoVision, Springdale, AR). For ribonuclease (RNase) treatment, RNase A was added to the PMS in standard EB to a final concentration of 300 g/ml. After incubation at room temperature for 5 min, the solution was analyzed by sucrose gradient centrifugation as above. Capture of DAZL1-Associated Messenger Ribonucleoprotein (mrnp) Particles on Oligo(dT) Beads Mouse testicular PMS was subjected to mrnp capture using the Oligotex mrna purification kit (Qiagen, Santa Clarita, CA) according to the manufacturer s protocol. Briefly, 0.25 ml of PMS was mixed with 0.25 ml of doublestrength buffer OBB (20 mm Tris ph 7.5, 1 M NaCl, 2 mm EDTA, and 0.2% SDS) and 20 l of Oligotex beads. After rocking at room temperature for 10 min, the beads were spun down and washed twice with 0.5 ml of wash buffer OW2 (10 mm Tris ph 7.5, 150 mm NaCl, and 1 mm EDTA). Bound proteins were eluted by heating in 30 l of double-strength Laemmli sample buffer at 100 C for 5 min. Aliquots of the load, the wash, and the bound fractions were analyzed by Western blotting with antibodies against DAZL1 and FMRP. Pretreatment of PMS with EDTA (30 mm, 37 C, 15 min), RNase (1.2 mg/ml, 37 C, 10 min), or NaOH (0.2 N, 37 C, 10 min, then neutralized to ph 8.0 with 1 N HCl) before capture was carried out according to Feng et al. [21]. RESULTS Binding of DAZ and DAZL1 to RNA Molecules The abilities of DAZ and DAZL1 to bind RNA molecules were studied using an assay in which in vitro-synthesized 35 S-labeled proteins were incubated with RNA homopolymers immobilized on agarose beads, and the bound proteins were analyzed by SDS-PAGE. As shown in Figure 1a, human DAZ and DAZL1, as well as mouse DAZL1, bound preferentially to poly U and poly G, similar to the Xenopus DAZL1 homologue, Xdazl, and FMRP [16, 21]. On the other hand, the protein product of an anonymous human cdna clone KIAA0058 [23] and the firefly luciferase, which contain no RNA binding motifs, failed to bind

3 ASSOCIATION OF DAZL1 WITH POLYRIBOSOMES 1657 FIG. 1. In vitro binding of DAZ and DAZL1 to RNA homopolymers. a) Equal amounts of S 35 -labeled proteins were incubated with equal bed volumes of RNA homopolymers immobilized on agarose beads in the presence of 0.1 M NaCl. Bound proteins were analyzed by SDS-PAGE followed by autoradiography. The lanes are A, poly A; U, poly U; C, poly C; and G, poly G. b) The binding assay was carried out at the indicated salt concentration (Molar). The T lane contains an amount equivalent to 50% of the material used in the binding assay. DAZL, DAZL1. to any of the RNA homopolymers (data not shown). In the presence of increasing amounts of salt, the binding of DAZ and DAZL1 to poly U persisted, whereas the binding to poly G diminished, suggesting that DAZ and DAZL1 bind more strongly to poly U (Fig. 1b). These results verified the RNA-binding properties of DAZ and DAZL1. However, the biological significance of the preferential binding observed in the in vitro assays has yet to be demonstrated. To delineate the regions required for RNA binding, a series of constructs with deletions in the RRM domain, the DAZ repeat region, or the C-terminal portion were generated (Fig. 2). These constructs were transcribed and translated in vitro, and the abilities of the resultant truncated proteins to bind poly U and poly G in the presence of 0.25 M NaCl were studied (Fig. 2). For DAZL1, deletion of RRM abolished its RNA-binding ability, whereas deletion of the single DAZ repeat affected the binding to poly G but not poly U, and that of the C-terminal portion showed little effect. It appears, therefore, that DAZL1 binds to RNA mainly through the RRM domain. The results for DAZ are less clear-cut. Deletion of RRM in either DAZ-R1 or DAZ- R2 diminished, but did not abolish, the RNA-binding ability. Similarly, deletion of seven of the nine DAZ repeats (in DAZ-Z1) or the C-terminal portion including the entire DAZ repeat region (in Z2) diminished but did not abolish the binding. The results suggest that the binding of DAZ to RNA does not depend solely on the RRM domain. To test whether the RRM domain and the C-terminal portion of DAZ can bind RNA homopolymers independently, fusion proteins were generated in which either the RRM domain or the C-terminal portion of DAZ was fused to the thioredoxin protein [24]. Both fusion proteins bound to the RNA polymers, though at different strengths. Generation of Anti-DAZL1 Antibodies A polyclonal antiserum was generated against the last 76 amino acid residues of the human DAZL1 protein, which is 86% identical to the corresponding region of mouse DAZL1 [11]. On Western blots, the anti-dazl1 antiserum detected a major band in mouse testicular extracts that comigrated with in vitro-synthesized DAZL1 and that was absent in the liver and the brain (Fig. 3a). The apparent molecular size of the putative DAZL1 was larger than the 33 kda predicted from the cdna sequence. A discrepancy between predicted molecular size and mobility in the SDS- PAGE gel was also reported for the Drosophila Boule protein [25]. Preincubation of the antiserum with increasing FIG. 2. Mapping regions within DAZL1 and DAZ that are required for RNA binding. The structures of DAZL1 and DAZ and the regions retained in the truncated proteins are shown, with the RNA recognition motif (RRM) and the DAZ repeat region indicated. See Materials and Methods for the amino acid residues deleted in the proteins. Binding of proteins to poly U (U) and poly G (G) in the presence of 0.25 M NaCl are shown to the right. The T lane contains an amount equivalent to 50% of the material used in the binding reaction. amounts of in vitro-synthesized DAZL1 reduced the signal of the putative DAZL1 but not of other minor bands, further supporting the authenticity of the protein (Fig. 3b). Detection of DAZL1 in Mouse Testicular Fractions The anti-dazl1 antiserum was used to trace DAZL1 during fractionation of mouse testicular extracts. When the FIG. 3. Identification of DAZL1 in mouse tissue extracts. a) Detection of DAZL1 by Western blotting with anti-dazl1 antibody. Extracts of mouse liver, brain, and testis, and in vitro-synthesized DAZL1 were fractionated by SDS-PAGE and Western blotted with anti-dazl1 antiserum. The arrowhead points to the putative DAZL1 protein. b) Inhibition of immunodetection of DAZL1 by in vitro-synthesized DAZL1. Anti-DAZL1 antiserum was preincubated with the indicated volume of TNT protein synthesis reaction before incubation with membranes containing equal amounts of mouse liver (L) and testis (T) extracts. T3 and T7 RNA polymerases transcribed the Dazl1 cdna clone in the sense and antisense directions, respectively.

4 1658 TSUI ET AL. FIG. 5. Association of DAZL1 with poly(a) mrna. a) Poly(A) containing RNP particles in mouse PMS were captured on oligo(dt) beads, and the presence of DAZL1 and FMRP in the captured RNP particles was analyzed by 10% SDS-PAGE followed by Western blotting. L, An amount equivalent to 8% of the initial load to the beads; W, the wash; and B, the bound fraction. b) Mouse testis PMS was pretreated with EDTA, RNase, or NaOH before oligo(dt) capture, and the presence of DAZL1 in the captured fraction was analyzed. polysomes into monosomes and caused a significant reduction in the sedimentation of DAZL1 (Fig. 4d). The sedimentation profiles of DAZL1 under the various conditions indicate that most DAZL1 in mouse testes is associated with polysomes. FIG. 4. Sucrose gradient analyses of DAZL1 in mouse testes. Mouse testis PMS in the presence of 5 mm MgCl 2 (a), 30 mm EDTA (b, e), or 0.5 M KCl (c), or after RNase A treatment (d), were fractionated by centrifugation through 15 45% sucrose gradients (except 5 30% in e). Aliquots of the fractions were analyzed on 10% SDS-PAGE gels and then Western blotted with antibodies against DAZL1, FMRP, and a human autoantibody against ribosomal P antigens (P-Ag). extracts were separated into nuclear, mitochondrial, and postmitochondrial fractions by differential centrifugation, over 75% of DAZL1 was detected in the PMS fraction (data not shown). Further fractionation of PMS on 15 45% sucrose gradients showed that most DAZL1 comigrated with the polysomes (Fig. 4a), similar to FMRP, which was shown previously to be associated with polysomes [21]. Other proteins that cross-reacted with the antiserum stayed at the top of the gradients (data not shown). Inclusion of 30 mm EDTA in the testicular extracts dissociated polysomes into 60S and 40S subunits, and caused a shift of DAZL1 to the top fractions of the gradients (Fig. 4b). On a 5 30% sucrose gradient, the DAZL1 protein in the EDTA-treated extracts showed a more heterogeneous distribution than that of FMRP (Fig. 4e). Addition of 0.5 M KCl, which is known to remove translation factors and aminoacyl-trna synthetases, but not most intrinsic ribosomal proteins [26], dissociated most of DAZL1 from the polysomes (Fig. 4c). RNase A treatment of PMS separated the Capture of DAZL1-Associated mrnp To investigate whether DAZL1 is associated with polysomes through its binding to mrna molecules, poly(a) containing mrnp particles in PMS were captured on oligo(dt) beads, and the presence of DAZL1 in the captured mrnp fractions was analyzed by SDS-PAGE followed by Western blotting. DAZL1, but not other cytoplasmic proteins that cross-reacted with anti-dazl1, was captured on oligo(dt) beads (Fig. 5a). FMRP was also captured on oligo(dt) beads, as previously reported [21, 27]. Capture of DAZL1 on oligo(dt) was not affected by 30 mm EDTA but was reduced by preincubation with RNase and abolished by NaOH treatment, further supporting the binding of DAZL1 to poly(a) RNA (Fig. 5b). DISCUSSION We present evidence for the association of DAZL1 with actively translating polyribosomes in testes. Our results suggest a role for DAZL1 in translational regulation of a subset of mrnas in germ cells. Germ cell-specific translational regulation is well documented for transition proteins and protamines [28]. Their mrnas are synthesized in round spermatids and stored as cytoplasmic mrnp particles for up to a week before being translated in elongated spermatids. Premature translation of Prm-1 mrna in transgenic mice leads to dominant male sterility [29]. Translational repression of protamine mrnas requires sequences within the 3 untranslated region, and several RNA-binding proteins that bind to the region have been isolated [30 32]. Among them PRBP (Prm-1 RNA-binding protein, encoded by the Tarbp2 gene) and TB-RBP (testis brain RNA-binding protein) were shown to repress protamine mrna translation in vitro [30, 31], and TB-RBP was found to be associated with translationally dormant free mrnp particles [33]. However, a recent study on the expression of protamines in the testes of Tarbp2 knock-out mice indicated

5 ASSOCIATION OF DAZL1 WITH POLYRIBOSOMES 1659 unexpectedly that PRBP is required for proper translational activation, but not repression, of protamine mrna [34]. How PRBP activates the translation of protamine mrna and whether it is associated with polyribosomes remain to be determined. While this report was in preparation, Maines and Wasserman [35] reported that the Drosophila homologue of DAZL1 Boule controlled the translation of Twine, a meiotic Cdc25-type phosphatase. They found that in boule mutants the translation, but not the transcription, of twine was significantly reduced, and that heterologous expression of Twine partially rescued the spermatogenic defect of boule mutants. Their results not only support our proposition that DAZL1 plays a role in translational regulation but also suggest Cdc25 transcripts as possible targets of DAZL1. Cdc25 phosphatases activate cyclin-dependent kinases and play an important role in cell cycle regulation. Three mammalian Cdc25 genes have been identified. Both Cdc25A and Cdc25C are expressed predominantly in the testis and could be the targets of DAZL1 [36, 37]. However, DAZL1 is likely to have additional targets besides Cdc25, as suggested by the incomplete rescue of the boule phenotype by Twine. DAZL1 may facilitate the translation of its target genes by sequestering their transcripts to polysomes, by enhancing their translational rate, or by protecting the transcripts from degradation. Whether DAZ is also involved in mrna translation remains to be determined. It has been proposed that DAZ plays little, or a limited, role in spermatogenesis, on the basis of evolutionary considerations [38]. The ability of a human DAZ transgene to rescue the spermatogenic defect of Dazl1 knock-out mice [17] argues against such a proposal and suggests that DAZ serves a function similar to that of DAZL1. Structurally, DAZ and DAZL1 share high sequence identity except for the C-terminal segments. The RNA-binding characteristics of DAZ and DAZL1 are very similar. Whether DAZ is also associated with polysomes remains to be determined. Because DAZ is present in great apes and Old World monkeys only, its subcellular localization awaits the availability of testicular tissues from these higher mammals. If DAZ and DAZL1 are shown to serve a similar function, future studies could address the therapeutic potential of DAZL1 over-expression in infertile males with DAZ deletion. ACKNOWLEDGMENTS We thank H. Cooke for the Dazl1 cdna clone and R. Swerdloff s group for helpful discussion. REFERENCES 1. Tiepolo L, Zuffardi O. Localization of factors controlling spermatogenesis in the nonfluorescent portion of the human Y chromosome long arm. Hum Genet 1976; 34: Roberts KP. Y-Chromosome deletions and male infertility: state of the art and clinical implications. J Androl 1998; 19: Cooke HJ. Y chromosome and male infertility. Rev Reprod 1999; 4: McElreavey K, Krausz C. Male infertility and the Y chromosome. Am J Hum Genet 1999; 64: Reijo R, Lee T-Y, Salo P, Allagappan R, Brown LG, Rosenberg M, Rozen S, Jaffe T, Straus D, Hovatta O, de la Chapelle A, Silber S, Page DC. Diverse spermatogenic defects in humans caused by Y chromosome deletions encompassing a novel RNA-binding protein gene. Nat Genet 1995; 10: Gläser B, Yen PH, Schempp W. Fiber-FISH unravels apparently seven DAZ genes or pseudogenes clustered within a Y chromosome region frequently deleted in azoospermic males. Chromosome Res 1998; 6: Shan Z, Hirschmann P, Seebacher T, Edelmann A, Jauch A, Morell J, Urbitsch P, Vogt PH. A SPGY copy homologous to the mouse gene Dazla and the Drosophila gene boule is autosomal and expressed only in the human male gonad. Hum Mol Genet 1996; 5: Cooke HJ, Lee M, Kerr S, Ruggiu M. A murine homologue of the human DAZ gene is autosomal and expressed only in male and female gonads. Hum Mol Genet 1996; 5: Reijo R, Seligman J, Dinulos MB, Jaffe T, Brown LG, Disteche CM, Page DC. Mouse autosomal homolog of DAZ, a candidate male sterility gene in humans, is expressed in male germ cells before and after puberty. Genomics 1996; 35: Saxena R, Brown LG, Hawkins T, Alagappan RK, Skaletsky H, Reeve MP, Reijo R, Rozen S, Dinulos MB, Disteche CM, Page DC. The DAZ gene cluster on the human Y chromosome arose from an autosomal gene that was transposed, repeatedly amplified and pruned. Nat Genet 1996; 14: Yen PH, Chai NN, Salido EC. The human autosomal gene DAZLA: testis specificity and a candidate for male infertility. Hum Mol Genet 1996; 5: Seboun E, Barbaux S, Bourgeron T, Nishi S, Algonik A, Egashira M, Kikkawa N, Bishop C, Fellous M, McElreavey K, Kasahara M. Gene sequence, localization and evolutionary conservation of DAZLA, a candidate male sterility gene. Genomics 1997; 41: Yen PH, Chai NN, Salido EC. The human DAZ genes, a putative male infertility factor on the Y chromosome, are highly polymorphic in the DAZ repeat region. Mamm Genome 1997; 8: Eberhart CG, Maines JZ, Wasserman SA. Meiotic cell cycle requirement for a fly homologue of human Deleted in Azoospermia. Nature 1996; 381: Ruggiu M, Speed R, Taggart M, McKay SJ, Kilanowski F, Saunders P, Dorin J, Cooke HJ. The mouse DAZLA gene encodes a cytoplasmic protein essential for gametogenesis. Nature 1997; 389: Houston DW, Zhang J, Maines JZ, Wasserman SA, King ML. A Xenopus DAZ-like gene encodes an RNA component of germ plasm and is a functional homologue of Drosophila boule. Development 1998; 125: Slee R, Grimes B, Speed RM, Taggart M, Maguire SM, Ross A, McGill MI, Saunders PTK, Cooke HJ. A human DAZ transgene confers partial rescue of the mouse Dazl null phenotype. Proc Natl Acad Sci USA 1999; 96: Habermann B, Mi HF, Edelmann A, Bohring C, Bäckert IT, Kiesewetter F, Aumüller A, Vogt PH. DAZ (Deleted in Azoospermia) genes encode proteins located in human late spermatids and in sperm tails. Hum Reprod 1998; 13: Dorfman DM, Genest DR, Pera RAR. Human DAZL1 encodes a candidate fertility factor in women that localizes to the prenatal and postnatal germ cells. Hum Reprod 1999; 14: Siomi H, Siomi MC, Nussbaum RL, Dreyfuss G. The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein. Cell 1993; 74: Feng Y, Absher D, Eberhart DE, Brown V, Malter HE, Warren ST. FMRP associates with polyribosomes as an mrnp, and the I304N mutation of severe fragile X syndrome abolishes this association. Mol Cell 1997; 1: Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press; Nomura N, Nagase T, Miyajima N, Sazuka T, Tanaka A, Sato S, Seki N, Kawarabayashi Y, Ishikawa K, Tabata S. Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cdna clones from human cell line KG-1. DNA Res 1994; 1: LaVallie ER, DiBlasio EA, Kovacic S, Grant KL, Schendel PF, Mc- Coy JM. A thioredoxin gene fusion expression system that circumvents inclusion body formation in the E. coli cytoplasm. Biotechnology 1993; 11: Cheng MH, Maines JZ, Wasserman SA. Biphasic subcellular localization of the DAZL-related protein Boule in Drosophila spermatogenesis. Dev Biol 1998; 204: Spirin AS. Ribosome preparation and cell-free protein synthesis. In: Hill WE, Dahlberg A, Garrett RA, Moore PB, Schlessinger D, Warner JR (eds.), The Ribosomes: Structure, Function, & Evolution. Washington, DC: American Society for Microbiology; 1990: Corbin F, Bouillon M, Fortin A, Morin S, Rousseau F, Khandjian W. The fragile X mental retardation protein is associated with poly(a) mrna in actively translating polyribosomes. Hum Mol Genet 1997; 6:

6 1660 TSUI ET AL. 28. Braun RE. Post-transcriptional control of gene expression during spermatogenesis. Semin Cell Dev Biol 1998; 9: Lee K, Haugen H, Clegg CH, Braun RE. Premature translation of protamine 1 mrna causes precocious nuclear condensation and arrests spermatid differentiation in mice. Proc Natl Acad Sci USA 1995; 92: Kwon YK, Hecht NB. Binding of a phosphoprotein to the 3 untranslated region of the mouse protamine 2 mrna temporally repressed its translation. Mol Cell Biol 1993; 13: Lee K, Fajardo MA, Braun RE. A testis cytoplasmic RNA-binding protein that has the properties of a translational repressor. Mol Cell Biol 1996; 16: Schumacher JM, Lee K, Edelhoff S, Braun RE. Spnr, a murine RNAbinding protein that is localized to cytoplasmic microtubules. J Cell Biol 1995; 129: Han JR, Gu W, Hecht NB. Testis-brain RNA-binding protein, a testicular translational regulatory RNA-binding protein, is present in the brain and binds to the 3 untranslated regions of transported brain mrnas. Biol Reprod 1995; 53: Zhong J, Peters AHFM, Lee K, Braun RE. A double-stranded RNAbinding protein required for activation of repressed messages in mammalian germ cells. Nat Genet 1999; 22: Maines JZ, Wasserman SA. Post-transcriptional regulation of the meiotic Cdc25 protein Twine by the Dazl orthologue Boule. Nat Cell Biol 1999; 1: Wickramasinghe D, Becker S, Ernst MK, Resnick JL, Centanni JM, Tessarollo L, Grabel LB, Donovan PJ. Two CDC25 homologues are differentially expressed during mouse development. Development 1995; 121: Wu S, Wolgemuth DJ. The distinct and developmentally regulated patterns of expression of members of the mouse Cdc25 gene family suggest differential functions during gametogenesis. Dev Biol 1995; 170: Agulnik AI, Zharkikh A, Boettger-Tong H, Bourgeron T, McElreavey K, Bishop CE. Evolution of the DAZ gene family suggest that Y- linked DAZ plays little, or a limited, role in spermatogenesis but underlines a recent African origin for human populations. Hum Mol Genet 1998; 7:

cyndazla: a cynomolgus monkey homologue of the human autosomal DAZ gene*

cyndazla: a cynomolgus monkey homologue of the human autosomal DAZ gene* Molecular Human Reproduction vol.3 no.6 pp. 479 483, 1997 cyndazla: a cynomolgus monkey homologue of the human autosomal DAZ gene* Cesare Carani 1,Jörg Gromoll 2, Martin H.Brinkworth 2, Manuela Simoni

More information

Expression patterns of the DAZ-associated protein DAZAP1 in rat and human ovaries

Expression patterns of the DAZ-associated protein DAZAP1 in rat and human ovaries Expression patterns of the DAZ-associated protein DAZAP1 in rat and human ovaries Hsien-An Pan, M.D., a,b Yue-Shan Lin, M.D., c,d Ko-Hung Lee, M.D., a Jin-Ru Huang, M.Sc., e Ying-Hui Lin, M.D., a and Pao-Lin

More information

Post-transcriptional control of gene expression during spermatogenesis

Post-transcriptional control of gene expression during spermatogenesis seminars in CELL & DEVELOPMENTAL BIOLOGY, Vol 9, 1998: pp 483 489 Article No. sr980226 Post-transcriptional control of gene expression during spermatogenesis Robert E. Braun The synthesis and storage of

More information

MicroRNA and Male Infertility: A Potential for Diagnosis

MicroRNA and Male Infertility: A Potential for Diagnosis Review Article MicroRNA and Male Infertility: A Potential for Diagnosis * Abstract MicroRNAs (mirnas) are small non-coding single stranded RNA molecules that are physiologically produced in eukaryotic

More information

Human chromosome deletions in Yq11, AZF candidate genes and male infertility: history and update

Human chromosome deletions in Yq11, AZF candidate genes and male infertility: history and update Molecular Human Reproduction vol.4 no.8 pp. 739 744, 1998 Human chromosome deletions in Yq11, AZF candidate genes and male infertility: history and update Peter H.Vogt Reproduction Genetics in Institute

More information

Eukaryotic Gene Regulation

Eukaryotic Gene Regulation Eukaryotic Gene Regulation Chapter 19: Control of Eukaryotic Genome The BIG Questions How are genes turned on & off in eukaryotes? How do cells with the same genes differentiate to perform completely different,

More information

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1. Generation and validation of mtef4-knockout mice.

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1. Generation and validation of mtef4-knockout mice. Supplementary Figure 1 Generation and validation of mtef4-knockout mice. (a) Alignment of EF4 (E. coli) with mouse, yeast and human EF4. (b) Domain structures of mouse mtef4 compared to those of EF4 (E.

More information

Analysis of Yq microdeletions in infertile males by PCR and DNA hybridization techniques

Analysis of Yq microdeletions in infertile males by PCR and DNA hybridization techniques Molecular Human Reproduction vol.4 no.12 pp. 1116 1121, 1998 Analysis of Yq microdeletions in infertile males by PCR and DNA hybridization techniques Paola Grimaldi 1, Claudia Scarponi 1, Pellegrino Rossi

More information

PREPARATION OF IF- ENRICHED CYTOSKELETAL PROTEINS

PREPARATION OF IF- ENRICHED CYTOSKELETAL PROTEINS TMM,5-2011 PREPARATION OF IF- ENRICHED CYTOSKELETAL PROTEINS Ice-cold means cooled in ice water. In order to prevent proteolysis, make sure to perform all steps on ice. Pre-cool glass homogenizers, buffers

More information

SEX CHROMOSOME GENETICS 99 Male Infertility and the Y Chromosome

SEX CHROMOSOME GENETICS 99 Male Infertility and the Y Chromosome Am. J. Hum. Genet. 64:928 933, 1999 SEX CHROMOSOME GENETICS 99 Male Infertility and the Y Chromosome Ken McElreavey 1 and Csilla Krausz 1,2 1 Immunogénétique Humaine, Institut Pasteur, Paris; and 2 Andrology

More information

MagCapture Exosome Isolation Kit PS Q&A

MagCapture Exosome Isolation Kit PS Q&A MagCapture Exosome Isolation Kit PS Q&A Specifications and performance P.1 Comparison of the conventional method P.2 Operation methods and composition P.4 Amount of starting sample P.5 Analysis after exosomes

More information

TRANSLATION: 3 Stages to translation, can you guess what they are?

TRANSLATION: 3 Stages to translation, can you guess what they are? TRANSLATION: Translation: is the process by which a ribosome interprets a genetic message on mrna to place amino acids in a specific sequence in order to synthesize polypeptide. 3 Stages to translation,

More information

Male infertility: analysis of the markers and genes on the human Y chromosome

Male infertility: analysis of the markers and genes on the human Y chromosome Human Reproduction vol.13 no.11 pp.3032 3038, 1998 Male infertility: analysis of the markers and genes on the human Y chromosome Dana R.Kostiner 1, Paul J.Turek 2 and Renee A.Reijo 1,2,3,4 1 Department

More information

Western Immunoblotting Preparation of Samples:

Western Immunoblotting Preparation of Samples: Western Immunoblotting Preparation of Samples: Total Protein Extraction from Culture Cells: Take off the medium Wash culture with 1 x PBS 1 ml hot Cell-lysis Solution into T75 flask Scrap out the cells

More information

Luminescent platforms for monitoring changes in the solubility of amylin and huntingtin in living cells

Luminescent platforms for monitoring changes in the solubility of amylin and huntingtin in living cells Electronic Supplementary Material (ESI) for Molecular BioSystems. This journal is The Royal Society of Chemistry 2016 Contents Supporting Information Luminescent platforms for monitoring changes in the

More information

10 mm KCl in a Ti-15 zonal rotor at 35,000 rpm for 16 hr at

10 mm KCl in a Ti-15 zonal rotor at 35,000 rpm for 16 hr at Proc. Nat. Acad. SCi. USA Vol. 68, No. 11, pp. 2752-2756, November 1971 Translation of Exogenous Messenger RNA for Hemoglobin on Reticulocyte and Liver Ribosomes (initiation factors/9s RNA/liver factors/reticulocyte

More information

RNA/DNA Stabilization Reagent for Blood/Bone Marrow

RNA/DNA Stabilization Reagent for Blood/Bone Marrow For general laboratory use. Not for use in diagnostic procedures. FOR IN VITRO USE ONLY. RNA/DNA Stabilization Reagent for Blood/Bone Marrow For simultaneous cell lysis and stabilization of nucleic acids

More information

Post-meiotic transcription of phosphoglycerate-kinase 2 in mouse testes

Post-meiotic transcription of phosphoglycerate-kinase 2 in mouse testes Bioscience Reports 5, 1087-1091 (i985) 1087 Printed in Great Britain Post-meiotic transcription of phosphoglycerate-kinase 2 in mouse testes Robert P. ERICKSON I, Alan M. MICHELSON 2, Michael P. ROSENBERG

More information

Recombinant Protein Expression Retroviral system

Recombinant Protein Expression Retroviral system Recombinant Protein Expression Retroviral system Viruses Contains genome DNA or RNA Genome encased in a protein coat or capsid. Some viruses have membrane covering protein coat enveloped virus Ø Essential

More information

SPERMATOGENESIS IN VITRO

SPERMATOGENESIS IN VITRO SPERMATOGENESIS IN VITRO INDUCTION OF PROLIFERATION, MEIOSIS AND DIFFERENTIATION Mário Sousa Lab Cell Biology Institute of Biomedical Sciences (ICBAS) University of Porto msousa@icbas.up.pt Spermatogonia

More information

A Testis Cytoplasmic RNA-Binding Protein That Has the Properties of a Translational Repressor

A Testis Cytoplasmic RNA-Binding Protein That Has the Properties of a Translational Repressor MOLECULAR AND CELLULAR BIOLOGY, June 1996, p. 3023 3034 Vol. 16, No. 6 0270-7306/96/$04.00 0 Copyright 1996, American Society for Microbiology A Testis Cytoplasmic RNA-Binding Protein That Has the Properties

More information

Expression of a Testis-Specific Form of TBP-Related Factor 2 (TRF2) mrna During Mouse Spermatogenesis

Expression of a Testis-Specific Form of TBP-Related Factor 2 (TRF2) mrna During Mouse Spermatogenesis Journal of Reproduction and Development, Vol. 49, No. 1, 2003 Research Note Expression of a Testis-Specific Form of TBP-Related Factor 2 (TRF2) mrna During Mouse Spermatogenesis Shin SUGIURA 1), Shin-ichi

More information

THE Y-CHROMOSOME : Genetics of Male Infertility

THE Y-CHROMOSOME : Genetics of Male Infertility THE Y-CHROMOSOME : Genetics of Male Infertility Greeshma Gopalan***, Sadia Tabassum Khan**, Ketki Sharma** & Aparna Sarkar * *** Tutor at Physiology Department, Rama Medical College, Hapur, Ghaziabad.;**M.Sc

More information

Y Chromosome Microdeletions and Alterations of Spermatogenesis*

Y Chromosome Microdeletions and Alterations of Spermatogenesis* 0163-769X/01/$03.00/0 Endocrine Reviews 22(2): 226 239 Copyright 2001 by The Endocrine Society Printed in U.S.A. Y Chromosome Microdeletions and Alterations of Spermatogenesis* CARLO FORESTA, ENRICO MORO,

More information

Materials and Methods , The two-hybrid principle.

Materials and Methods , The two-hybrid principle. The enzymatic activity of an unknown protein which cleaves the phosphodiester bond between the tyrosine residue of a viral protein and the 5 terminus of the picornavirus RNA Introduction Every day there

More information

Business Address: Kaufman Medical Building Suite Fifth Avenue Pittsburgh, PA 15213

Business Address: Kaufman Medical Building  Suite Fifth Avenue Pittsburgh, PA 15213 Name: Thomas Michael Jaffe Business Address: Kaufman Medical Building E-Mail Address:jaffetm2@upmc.edu Suite 700 3471 Fifth Avenue Pittsburgh, PA 15213 Business Phone: 412-692-4100 Business Fax: 412-692-4101

More information

Supplementary data Supplementary Figure 1 Supplementary Figure 2

Supplementary data Supplementary Figure 1 Supplementary Figure 2 Supplementary data Supplementary Figure 1 SPHK1 sirna increases RANKL-induced osteoclastogenesis in RAW264.7 cell culture. (A) RAW264.7 cells were transfected with oligocassettes containing SPHK1 sirna

More information

The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein

The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein THESIS BOOK The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein Orsolya Buzás-Bereczki Supervisors: Dr. Éva Bálint Dr. Imre Miklós Boros University of

More information

RNA Processing in Eukaryotes *

RNA Processing in Eukaryotes * OpenStax-CNX module: m44532 1 RNA Processing in Eukaryotes * OpenStax This work is produced by OpenStax-CNX and licensed under the Creative Commons Attribution License 3.0 By the end of this section, you

More information

Protocol for Gene Transfection & Western Blotting

Protocol for Gene Transfection & Western Blotting The schedule and the manual of basic techniques for cell culture Advanced Protocol for Gene Transfection & Western Blotting Schedule Day 1 26/07/2008 Transfection Day 3 28/07/2008 Cell lysis Immunoprecipitation

More information

Problem Set 5, 7.06, Spring of 13

Problem Set 5, 7.06, Spring of 13 Problem Set 5, 7.06, Spring 2003 1 of 13 1. In order to please your demanding thesis advisor, you've completed an extensive fractionation and biochemical purification of proteins localized to the mitochondria,

More information

ATTACHMENT OF RIBOSOMES TO MEMBRANES DURING POLYSOME FORMATION IN MOUSE SARCOMA 180 CELLS

ATTACHMENT OF RIBOSOMES TO MEMBRANES DURING POLYSOME FORMATION IN MOUSE SARCOMA 180 CELLS Published Online: 1 June, 1971 Supp Info: http://doi.org/10.1083/jcb.49.3.683 Downloaded from jcb.rupress.org on November 2, 2018 ATTACHMENT OF RIBOSOMES TO MEMBRANES DURING POLYSOME FORMATION IN MOUSE

More information

PRODUCT INFORMATION & MANUAL

PRODUCT INFORMATION & MANUAL PRODUCT INFORMATION & MANUAL Nuclear Extraction Kit NBP2-29447 Research use only. Not for diagnostic or therapeutic procedures. www.novusbio.com - P: 888.506.6887 - technical@novusbio.com Novus kits are

More information

MicroRNAs control mrna fate by compartmentalization based on 3 UTR length in male germ cells

MicroRNAs control mrna fate by compartmentalization based on 3 UTR length in male germ cells Zhang et al. Genome Biology (2017) 18:105 DOI 10.1186/s13059-017-1243-x RESEARCH MicroRNAs control mrna fate by compartmentalization based on 3 UTR length in male germ cells Ying Zhang 1, Chong Tang 1,

More information

Spermatogenesis. What is it and what does it look like? How do hormones regulate spermatogenesis?

Spermatogenesis. What is it and what does it look like? How do hormones regulate spermatogenesis? Spermatogenesis What is it and what does it look like? How do hormones regulate spermatogenesis? FSH, androgens, growth factors Animal Physiology (Hill, Wise, Anderson): Ch. 15 435-438 1 Spermatogenesis:

More information

Life Sciences 1A Midterm Exam 2. November 13, 2006

Life Sciences 1A Midterm Exam 2. November 13, 2006 Name: TF: Section Time Life Sciences 1A Midterm Exam 2 November 13, 2006 Please write legibly in the space provided below each question. You may not use calculators on this exam. We prefer that you use

More information

Nature Genetics: doi: /ng Supplementary Figure 1. Assessment of sample purity and quality.

Nature Genetics: doi: /ng Supplementary Figure 1. Assessment of sample purity and quality. Supplementary Figure 1 Assessment of sample purity and quality. (a) Hematoxylin and eosin staining of formaldehyde-fixed, paraffin-embedded sections from a human testis biopsy collected concurrently with

More information

Product Manual. Omni-Array Sense Strand mrna Amplification Kit, 2 ng to 100 ng Version Catalog No.: Reactions

Product Manual. Omni-Array Sense Strand mrna Amplification Kit, 2 ng to 100 ng Version Catalog No.: Reactions Genetic Tools and Reagents Universal mrna amplification, sense strand amplification, antisense amplification, cdna synthesis, micro arrays, gene expression, human, mouse, rat, guinea pig, cloning Omni-Array

More information

PRODUCT: RNAzol BD for Blood May 2014 Catalog No: RB 192 Storage: Store at room temperature

PRODUCT: RNAzol BD for Blood May 2014 Catalog No: RB 192 Storage: Store at room temperature PRODUCT: RNAzol BD for Blood May 2014 Catalog No: RB 192 Storage: Store at room temperature PRODUCT DESCRIPTION. RNAzol BD is a reagent for isolation of total RNA from whole blood, plasma or serum of human

More information

For the 5 GATC-overhang two-oligo adaptors set up the following reactions in 96-well plate format:

For the 5 GATC-overhang two-oligo adaptors set up the following reactions in 96-well plate format: Supplementary Protocol 1. Adaptor preparation: For the 5 GATC-overhang two-oligo adaptors set up the following reactions in 96-well plate format: Per reaction X96 10X NEBuffer 2 10 µl 10 µl x 96 5 -GATC

More information

Problem-solving Test: The Mechanism of Protein Synthesis

Problem-solving Test: The Mechanism of Protein Synthesis Q 2009 by The International Union of Biochemistry and Molecular Biology BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION Vol. 37, No. 1, pp. 58 62, 2009 Problem-based Learning Problem-solving Test: The Mechanism

More information

Nature Methods: doi: /nmeth Supplementary Figure 1

Nature Methods: doi: /nmeth Supplementary Figure 1 Supplementary Figure 1 Subtiligase-catalyzed ligations with ubiquitin thioesters and 10-mer biotinylated peptides. (a) General scheme for ligations between ubiquitin thioesters and 10-mer, biotinylated

More information

Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene

Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene YUELIN ZHANG, WEIHUA FAN, MARK KINKEMA, XIN LI, AND

More information

Reduced copy number of DAZ genes in subfertile and infertile men

Reduced copy number of DAZ genes in subfertile and infertile men MALE FACTOR FERTILITY AND STERILITY VOL. 77, NO. 1, JANUARY 2002 Copyright 2002 American Society for Reproductive Medicine Published by Elsevier Science Inc. Printed on acid-free paper in U.S.A. Reduced

More information

Supplementary Information

Supplementary Information Supplementary Information Structural aspects of messenger RNA maintenance by the ribosome Lasse B. Jenner 1,2, Natalia Demeshkina 1,3, Gulnara Yusupova 1,3* and Marat Yusupov 1,3*. 1 Institut de Génétique

More information

Trident Membrane Protein Extraction Kit

Trident Membrane Protein Extraction Kit Cat. No. Size Shelf life GTX16373 5/ 20 tests 12 months at the appropriate storage temperatures (see below) Contents Component Storage Amount for 5 tests Amount for 20 tests Buffer A -20 o C 2.5 ml 10

More information

The following protocol describes the isolation of nuclei from tissue. Item. Catalog No Manufacturer

The following protocol describes the isolation of nuclei from tissue. Item. Catalog No Manufacturer SOP: Nuclei isolation from tissue and DNaseI treatment Date modified: 090923 Modified by: P. Sabo. (UW) The following protocol describes the isolation of nuclei from tissue. Ordering Information Item.

More information

Mitochondrial DNA Isolation Kit

Mitochondrial DNA Isolation Kit Mitochondrial DNA Isolation Kit Catalog Number KA0895 50 assays Version: 01 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Background... 3 General Information... 4 Materials

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Supplementary Figures Supplementary Figure S1. Binding of full-length OGT and deletion mutants to PIP strips (Echelon Biosciences). Supplementary Figure S2. Binding of the OGT (919-1036) fragments with

More information

Chromatin IP (Isw2) Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles.

Chromatin IP (Isw2) Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles. Chromatin IP (Isw2) 7/01 Toshi last update: 06/15 Reagents Fix soln: 11% formaldehyde, 0.1 M NaCl, 1 mm EDTA, 50 mm Hepes-KOH ph 7.6. Freshly prepared. Do not store in glass bottles. 2.5 M glycine. TBS:

More information

RayBio KinaseSTAR TM Akt Activity Assay Kit

RayBio KinaseSTAR TM Akt Activity Assay Kit Activity Assay Kit User Manual Version 1.0 March 13, 2015 RayBio KinaseSTAR TM Akt Activity Kit Protocol (Cat#: 68AT-Akt-S40) RayBiotech, Inc. We Provide You With Excellent Support And Service Tel:(Toll

More information

Antibodies: LB1 buffer For 50 ml For 10ml For 30 ml Final 1 M HEPES, ph 2.5 ml 0.5 ml 1.5 ml 50mM. 5 M NaCl 1.4 ml 280 µl 0.

Antibodies: LB1 buffer For 50 ml For 10ml For 30 ml Final 1 M HEPES, ph 2.5 ml 0.5 ml 1.5 ml 50mM. 5 M NaCl 1.4 ml 280 µl 0. Experiment: Date: Tissue: Purpose: ChIP-Seq Antibodies: 11x cross-link buffer: Regent Stock Solution Final Vol for 10 ml of 11xstock concentration 5 M NaCl 0.1M 0.2 ml 0.5 M EDTA 1 mm 20 ul 0.5 M EGTA,

More information

Instructions. Fuse-It-mRNA easy. Shipping and Storage. Overview. Kit Contents. Specifications. Note: Important Guidelines

Instructions. Fuse-It-mRNA easy. Shipping and Storage. Overview. Kit Contents. Specifications. Note: Important Guidelines Membrane fusion is a highly efficient method for transfecting various molecules and particles into mammalian cells, even into sensitive and primary cells. The Fuse-It reagents are cargo-specific liposomal

More information

Single Essential Amino Acids (valine/histidine/methiotiine/high-temperature inhibition)

Single Essential Amino Acids (valine/histidine/methiotiine/high-temperature inhibition) Proc. Nat. Acad. Sci. USA Vol. 68, No. 9, pp. 2057-2061, September 1971 Regulation of Protein Synthesis Initiation in HeLa Cells Deprived of Single ssential Amino Acids (valine/histidine/methiotiine/high-temperature

More information

The Schedule and the Manual of Basic Techniques for Cell Culture

The Schedule and the Manual of Basic Techniques for Cell Culture The Schedule and the Manual of Basic Techniques for Cell Culture 1 Materials Calcium Phosphate Transfection Kit: Invitrogen Cat.No.K2780-01 Falcon tube (Cat No.35-2054:12 x 75 mm, 5 ml tube) Cell: 293

More information

Chromatin Immunoprecipitation (ChIPs) Protocol (Mirmira Lab)

Chromatin Immunoprecipitation (ChIPs) Protocol (Mirmira Lab) Chromatin Immunoprecipitation (ChIPs) Protocol (Mirmira Lab) Updated 12/3/02 Reagents: ChIP sonication Buffer (1% Triton X-100, 0.1% Deoxycholate, 50 mm Tris 8.1, 150 mm NaCl, 5 mm EDTA): 10 ml 10 % Triton

More information

Objectives: Prof.Dr. H.D.El-Yassin

Objectives: Prof.Dr. H.D.El-Yassin Protein Synthesis and drugs that inhibit protein synthesis Objectives: 1. To understand the steps involved in the translation process that leads to protein synthesis 2. To understand and know about all

More information

Supplementary Material

Supplementary Material Supplementary Material Nuclear import of purified HIV-1 Integrase. Integrase remains associated to the RTC throughout the infection process until provirus integration occurs and is therefore one likely

More information

To General Embryology Dr: Azza Zaki

To General Embryology Dr: Azza Zaki Introduction To General Embryology The Human Development is a continuous process that begins when an ovum from a female is fertilized by a sperm from a male. Cell division, growth and differentiation transform

More information

mirna Dr. S Hosseini-Asl

mirna Dr. S Hosseini-Asl mirna Dr. S Hosseini-Asl 1 2 MicroRNAs (mirnas) are small noncoding RNAs which enhance the cleavage or translational repression of specific mrna with recognition site(s) in the 3 - untranslated region

More information

Genetics Aspects of Male infertility

Genetics Aspects of Male infertility Genetics Aspects of Male infertility A. Ebrahimi, Molecular Genetic SM Kalantar, Prof. Molecular Cytogenetic Research & Clinical Centre for Infertility, Reproductive & Genetic Unit, Yazd Medical Sciences

More information

Molecular Biology (BIOL 4320) Exam #2 April 22, 2002

Molecular Biology (BIOL 4320) Exam #2 April 22, 2002 Molecular Biology (BIOL 4320) Exam #2 April 22, 2002 Name SS# This exam is worth a total of 100 points. The number of points each question is worth is shown in parentheses after the question number. Good

More information

7.06 Cell Biology EXAM #3 April 24, 2003

7.06 Cell Biology EXAM #3 April 24, 2003 7.06 Spring 2003 Exam 3 Name 1 of 8 7.06 Cell Biology EXAM #3 April 24, 2003 This is an open book exam, and you are allowed access to books and notes. Please write your answers to the questions in the

More information

Mammalian Membrane Protein Extraction Kit

Mammalian Membrane Protein Extraction Kit Mammalian Membrane Protein Extraction Kit Catalog number: AR0155 Boster s Mammalian Membrane Protein Extraction Kit is a simple, rapid and reproducible method to prepare cellular protein fractions highly

More information

The U1 snrnp Base Pairs with the 5 Splice Site within a Penta-snRNP Complex

The U1 snrnp Base Pairs with the 5 Splice Site within a Penta-snRNP Complex MOLECULAR AND CELLULAR BIOLOGY, May 2003, p. 3442 3455 Vol. 23, No. 10 0270-7306/03/$08.00 0 DOI: 10.1128/MCB.23.10.3442 3455.2003 Copyright 2003, American Society for Microbiology. All Rights Reserved.

More information

PRODUCT INFORMATION & MANUAL

PRODUCT INFORMATION & MANUAL PRODUCT INFORMATION & MANUAL Mitochondrial Extraction Kit NBP2-29448 Research use only. Not for diagnostic or therapeutic procedures www.novusbio.com P: 303.760.1950 P: 888.506.6887 F: 303.730.1966 technical@novusbio.com

More information

Problem Set 5 KEY

Problem Set 5 KEY 2006 7.012 Problem Set 5 KEY ** Due before 5 PM on THURSDAY, November 9, 2006. ** Turn answers in to the box outside of 68-120. PLEASE WRITE YOUR ANSWERS ON THIS PRINTOUT. 1. You are studying the development

More information

Bio 401 Sp2014. Multiple Choice (Circle the letter corresponding to the correct answer)

Bio 401 Sp2014. Multiple Choice (Circle the letter corresponding to the correct answer) MIDTERM EXAM KEY (60 pts) You should have 5 pages. Please put your name on every page. You will have 70 minutes to complete the exam. You may begin working as soon as you receive the exam. NOTE: the RED

More information

SUPPLEMENTAL INFORMATION

SUPPLEMENTAL INFORMATION SUPPLEMENTAL INFORMATION EXPERIMENTAL PROCEDURES Tryptic digestion protection experiments - PCSK9 with Ab-3D5 (1:1 molar ratio) in 50 mm Tris, ph 8.0, 150 mm NaCl was incubated overnight at 4 o C. The

More information

MEIOSIS IS THE process of one DNA replication followed

MEIOSIS IS THE process of one DNA replication followed 0021-972X/04/$15.00/0 The Journal of Clinical Endocrinology & Metabolism 89(4):1926 1933 Printed in U.S.A. Copyright 2004 by The Endocrine Society doi: 10.1210/jc.2003-031178 Association of Meiotic Arrest

More information

SUPPLEMENTARY MATERIAL

SUPPLEMENTARY MATERIAL SUPPLEMENTARY MATERIAL Table S1. Primers and fluorescent probes used for qrt-pcr analysis of relative expression levels of PPP family phosphatases. gene name forward primer, 5-3 probe, 5-3 reverse primer,

More information

SUPPLEMENTAL DATA RESULTS

SUPPLEMENTAL DATA RESULTS SUPPLEMENTAL DATA RESULTS Ded1-mediated ribosomal scanning is less leaky than scanning promoted by eifs 4A/4B/4F. The efficiency of leaky scanning in the presence of Ded1 or of eifs 4A/4B/4F was investigated

More information

Bio 111 Study Guide Chapter 17 From Gene to Protein

Bio 111 Study Guide Chapter 17 From Gene to Protein Bio 111 Study Guide Chapter 17 From Gene to Protein BEFORE CLASS: Reading: Read the introduction on p. 333, skip the beginning of Concept 17.1 from p. 334 to the bottom of the first column on p. 336, and

More information

BMC Evolutionary Biology

BMC Evolutionary Biology BMC Evolutionary Biology BioMed Central Research article Evolution of the DAZ gene and the AZFc region on primate Y chromosomes Yueh-Hsiang Yu 1,2, Yi-Wen Lin 2, Jane-Fang Yu 3, Werner Schempp 4 and Pauline

More information

DNA codes for RNA, which guides protein synthesis.

DNA codes for RNA, which guides protein synthesis. Section 3: DNA codes for RNA, which guides protein synthesis. K What I Know W What I Want to Find Out L What I Learned Vocabulary Review synthesis New RNA messenger RNA ribosomal RNA transfer RNA transcription

More information

mrna mrna mrna mrna GCC(A/G)CC

mrna mrna mrna mrna GCC(A/G)CC - ( ) - * - :. * Email :zomorodi@nigeb.ac.ir. :. (CMV) IX :. IX ( ) pcdna3 ( ) IX. (CHO). IX IX :.. IX :. IX IX : // : - // : /.(-) ).( ' '.(-) mrna - () m7g.() mrna ( ) (AUG) ) () ( - ( ) mrna. mrna.(

More information

Genetics. Instructor: Dr. Jihad Abdallah Transcription of DNA

Genetics. Instructor: Dr. Jihad Abdallah Transcription of DNA Genetics Instructor: Dr. Jihad Abdallah Transcription of DNA 1 3.4 A 2 Expression of Genetic information DNA Double stranded In the nucleus Transcription mrna Single stranded Translation In the cytoplasm

More information

Molecular Biology (BIOL 4320) Exam #2 May 3, 2004

Molecular Biology (BIOL 4320) Exam #2 May 3, 2004 Molecular Biology (BIOL 4320) Exam #2 May 3, 2004 Name SS# This exam is worth a total of 100 points. The number of points each question is worth is shown in parentheses after the question number. Good

More information

AZOOSPERMIA Chromosome Y

AZOOSPERMIA Chromosome Y AZOOSPERMIA Chromosome Y M i c r o d e l e t i o n Ref.: PI EDP003024-40 testspi EDP002024 1. INTRODUCTION In 1976, Tiepolo and Zuffardi reported de novo, microscopically detectable deletions of the distal

More information

Chapter 10 - Post-transcriptional Gene Control

Chapter 10 - Post-transcriptional Gene Control Chapter 10 - Post-transcriptional Gene Control Chapter 10 - Post-transcriptional Gene Control 10.1 Processing of Eukaryotic Pre-mRNA 10.2 Regulation of Pre-mRNA Processing 10.3 Transport of mrna Across

More information

MEK1 Assay Kit 1 Catalog # Lot # 16875

MEK1 Assay Kit 1 Catalog # Lot # 16875 MEK1 Assay Kit 1 Kit Components Assay Dilution Buffer (ADB), Catalog # 20-108. Three vials, each containing 1.0ml of assay dilution buffer (20mM MOPS, ph 7.2, 25mM ß-glycerol phosphate, 5mM EGTA, 1mM sodium

More information

The Molecular Evolution of Gene Birth and Death. Author: Ann Brokaw AP Biology Teacher Rocky River High School Rocky River, Ohio

The Molecular Evolution of Gene Birth and Death. Author: Ann Brokaw AP Biology Teacher Rocky River High School Rocky River, Ohio The Molecular Evolution of Gene Birth and Death Author: Ann Brokaw AP Biology Teacher Rocky River High School Rocky River, Ohio The Birth and Death of Genes To the student: The following slides provide

More information

CDY1 and BOULE transcripts assessed in the same biopsy as predictive markers for successful testicular sperm retrieval

CDY1 and BOULE transcripts assessed in the same biopsy as predictive markers for successful testicular sperm retrieval CDY1 and BOULE transcripts assessed in the same biopsy as predictive markers for successful testicular sperm retrieval Sandra E. Kleiman, Ph.D., Ofer Lehavi, M.D., Ron Hauser, M.D., Amnon Botchan, M.D.,

More information

The spermatogenesis CHARACTERISTICS OF THE SPERMATOZOON 26/04/2017. Reproductive Biotechnologies Andrology I. Prof. Alberto Contri

The spermatogenesis CHARACTERISTICS OF THE SPERMATOZOON 26/04/2017. Reproductive Biotechnologies Andrology I. Prof. Alberto Contri Reproductive Biotechnologies Andrology I The spermatogenesis Prof. Alberto Contri CHARACTERISTICS OF THE SPERMATOZOON 1) Aploid cell with high condensed DNA 2) Forward motility - flagellum 3) Enzymes for

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary Figure 1. CD4 + T cell activation and lack of apoptosis after crosslinking with anti-cd3 + anti-cd28 + anti-cd160. (a) Flow cytometry of anti-cd160 (5D.10A11) binding

More information

Regulation of Gene Expression in Eukaryotes

Regulation of Gene Expression in Eukaryotes Ch. 19 Regulation of Gene Expression in Eukaryotes BIOL 222 Differential Gene Expression in Eukaryotes Signal Cells in a multicellular eukaryotic organism genetically identical differential gene expression

More information

PRODUCT INFORMATION & MANUAL

PRODUCT INFORMATION & MANUAL PRODUCT INFORMATION & MANUAL 0.4 micron for Overall Exosome Isolation (Cell Media) NBP2-49826 For research use only. Not for diagnostic or therapeutic procedures. www.novusbio.com - P: 303.730.1950 - P:

More information

PROTEIN SYNTHESIS. It is known today that GENES direct the production of the proteins that determine the phonotypical characteristics of organisms.

PROTEIN SYNTHESIS. It is known today that GENES direct the production of the proteins that determine the phonotypical characteristics of organisms. PROTEIN SYNTHESIS It is known today that GENES direct the production of the proteins that determine the phonotypical characteristics of organisms.» GENES = a sequence of nucleotides in DNA that performs

More information

Alternative RNA processing: Two examples of complex eukaryotic transcription units and the effect of mutations on expression of the encoded proteins.

Alternative RNA processing: Two examples of complex eukaryotic transcription units and the effect of mutations on expression of the encoded proteins. Alternative RNA processing: Two examples of complex eukaryotic transcription units and the effect of mutations on expression of the encoded proteins. The RNA transcribed from a complex transcription unit

More information

Problem Set #5 4/3/ Spring 02

Problem Set #5 4/3/ Spring 02 Question 1 Chloroplasts contain six compartments outer membrane, intermembrane space, inner membrane, stroma, thylakoid membrane, and thylakoid lumen each of which is populated by specific sets of proteins.

More information

a Control IgG Intestine c Testis b Thymus 1 3 2 S S 2 1 3 4 4 Figure S1 The wild-type mouse (C57BL/6J) organs (intestine, thymus and testis) were frozen in liquid nitrogen and sectioned at 5 µm on a cryostat.

More information

Central Dogma. Central Dogma. Translation (mrna -> protein)

Central Dogma. Central Dogma. Translation (mrna -> protein) Central Dogma Central Dogma Translation (mrna -> protein) mrna code for amino acids 1. Codons as Triplet code 2. Redundancy 3. Open reading frames 4. Start and stop codons 5. Mistakes in translation 6.

More information

GENETICS OF MALE INFERTILITY: EVOLUTION OF THE X AND Y CHROMOSOME AND TRANSMISSION OF MALE INFERTILITY TO FUTURE GENERATIONS

GENETICS OF MALE INFERTILITY: EVOLUTION OF THE X AND Y CHROMOSOME AND TRANSMISSION OF MALE INFERTILITY TO FUTURE GENERATIONS GENETICS OF MALE INFERTILITY: EVOLUTION OF THE X AND Y CHROMOSOME AND TRANSMISSION OF MALE INFERTILITY TO FUTURE GENERATIONS Sherman J. Silber, M.D.* Infertility Center of St. Louis St. Luke's Hospital

More information

MODULE 3: TRANSCRIPTION PART II

MODULE 3: TRANSCRIPTION PART II MODULE 3: TRANSCRIPTION PART II Lesson Plan: Title S. CATHERINE SILVER KEY, CHIYEDZA SMALL Transcription Part II: What happens to the initial (premrna) transcript made by RNA pol II? Objectives Explain

More information

Caution: For Laboratory Use. A product for research purposes only. Eu-W1024 ITC Chelate & Europium Standard. Product Number: AD0013

Caution: For Laboratory Use. A product for research purposes only. Eu-W1024 ITC Chelate & Europium Standard. Product Number: AD0013 TECHNICAL DATA SHEET Lance Caution: For Laboratory Use. A product for research purposes only. Eu-W1024 ITC Chelate & Europium Standard Product Number: AD0013 INTRODUCTION: Fluorescent isothiocyanato-activated

More information

S.J.Qureshi 1, A.R.Ross 1, K.Ma 1, H.J.Cooke 1, M.A.M c lntyre 2, A.C.Chandley 1 and T.B.Hargreave Introduction

S.J.Qureshi 1, A.R.Ross 1, K.Ma 1, H.J.Cooke 1, M.A.M c lntyre 2, A.C.Chandley 1 and T.B.Hargreave Introduction Molecular Human Reproduction vol. no. pp. 775779, 1996 Polymerase chain reaction screening for Y chromosome microdeletions: a first step towards the diagnosis of geneticallydetermined spermatogenic failure

More information

Human Genome: Mapping, Sequencing Techniques, Diseases

Human Genome: Mapping, Sequencing Techniques, Diseases Human Genome: Mapping, Sequencing Techniques, Diseases Lecture 4 BINF 7580 Fall 2005 1 Let us review what we talked about at the previous lecture. Please,... 2 The central dogma states that the transfer

More information

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Supplementary Information p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Yuri Shibata, Masaaki Oyama, Hiroko Kozuka-Hata, Xiao Han, Yuetsu Tanaka,

More information

RNA (Ribonucleic acid)

RNA (Ribonucleic acid) RNA (Ribonucleic acid) Structure: Similar to that of DNA except: 1- it is single stranded polunucleotide chain. 2- Sugar is ribose 3- Uracil is instead of thymine There are 3 types of RNA: 1- Ribosomal

More information