Types of Electrophilic Carcinogenic Intermediates
|
|
- Elvin Williams
- 5 years ago
- Views:
Transcription
1 Types of Electrophilic Carcinogenic Intermediates Procarcinogens Reactive intermediates Enzymes involved in control Aromatic hydrocarbons Epoxides Cytochromes P450 Glutathione S-transferases Epoxide hydrolases Aromatic amines Reactive esters Cytochromes P450 Sulfotransferases Acetyltransferases UDP-Glucuronosyltransferases Glutathione S-transferases Dialkylnitrosamines Carbonium ions/ electron-deficient alkyl groups Cytochromes P450 Vicinal dihaloalkanes Episulfonium ions Glutathione S-transferases
2 The Active Site of Aspergillus niger meh
3 Extended Enzymatic Mechanism of Microsomal Epoxide Hydrolase Tyr Tyr H H H R R R R H Asp nucleophilic attack H + Asp H H hydrolysis H + Asp + R H R N N H His Glu
4 3D Structure of Bacterial Limonene Epoxide Hydrolase Asp 101 Arg 99 Asp 132 Tyr 53 Asn 55
5 Enzymatic Mechanism of Limonene Epoxide Hydrolase D 101 D 101 R 99 H N H 2 N H NH 2 H H H H 2 N Hydrolysis R 99 NH H 2 N NH 2 H H H H H 2 N N 55 N 55 D 132 D 132 Y 53 Y 53
6 Kinetic Analysis of meh Mutant Glu 404 Asp ,10-epoxystearic acid 1/v [nmol -1 x mg meh x min] = wild type meh = meh Glu 404 Asp K M [µm] V max [nmol/mg/min] Wild type meh /s [µm -1 ] meh Glu 404 Asp
7 Relationship between K M, K D and Rate Constants of the meh Enzymatic Mechanism K D k 1 k 2 E + S E S E S E + P K M = K D k 2 k 1 + k 2 k 2 k 1 << k 2 => 1 => K M = K D ; V max ~ k 1 k 1 + k 2 k 1 >> k 2 => k 2 k 1 + k 2 k 2 => K M k 2 = ; V max ~ k 2 k 1 K D k 1 k 1 = k 2 => k 2 k 1 + k 2 = 1 2 => 1 K M = K D ; V max ~ k 1, k 2 2
8 Kinetics of Enzymatic Epoxide Hydrolysis 5 4,5 H 4 3,5 H H E + S ES E-S E + P 3 2,5 2 1,5 1 0,5 S ES E-S P 0 0 0,1 0,2 0,3 0,4 0,5 0,6 0,7 0,8 0,9 1 time [s]
9 Threshold of the Genotoxic Effect of Styrene 7,8-oxide in hmeh-transgenic V79 Chinese Hamster Lung Fibroblasts 0.15 elution rate [h -1 ] 0.1 mock transfected 0.05 meh transfected E J styrene 7,8-oxide [µm]
10 Conclusions Xenobiotic-metabolizing EHs are α/β hydrolase fold enzymes working with a catalytic triad The first step of enzymatic epoxide hydrolysis is optimized for speed, allowing efficient detoxification with broad substrate specificity Experimental verification showed that this high speed detoxication introduces a practical threshold of genotoxicity, at least for the epoxides investigated
11 Alwyn Jones Sherry Mowbray Terese Bergfors Martin Hallberg Jinyu Zou Roland Furstoss Jacques Baratti Christophe Morisseau Michael Arand Annette Cronin Heike Dürk Karen Hänel Jan Georg Hengstler Maria Elena Herrero Shirli Homburg Michael Knehr Matthias Lohmann Astrid Mecky Frank Müller Heike Nagel Bruce Hammock Jeff Beetham David Grant Christophe Morisseau Richard Armstrong Conny Cassidy Dick Janssen Manfred Reetz Ari Hirvonen Marek Jakubowski Dominique Lison Vincent Haufroid Pavel Vodicka & Colleagues EU Network of Excellence ECNIS
12
13 Threshold of the Genotoxic Effect of Styrene 7,8-oxide in hmeh-transgenic V79 Chinese Hamster Lung Fibroblasts 0.15 elution rate [h -1 ] 0.1 mock transfected 0.05 meh transfected E J styrene 7,8-oxide [µm]
14 Typical meh Substrates Cl Cl Cl Cl N benzo[a]pyrene 4,5-oxide Cl Cl HEM NH 2 carbamazepine 10,11-ox H cis-9,10-epoxystearic acid CH 3 CH 3 cis-stilbene oxide styrene 7,8-oxide androstene oxide octane-1,2-epoxid
15 Mouse seh Structure
16 EH from Agrobacterium at 2.1 Å seh from mouse at 2.8 Å EH from Aspergillus at 1.7 Å Nardini et al., J.Biol.Chem Argiriadi et al., PNAS 1999 Zou et al., Structure 2000 Leukotriene A 4 hydrolase from human at 1.95 Å EH from Rhodococcus at 1.2 Å Thunnissen et al., Nature Struct. Biol Arand et al., EMB J., in press
17 EH from Aspergillus
18 EH from Agrobacterium
19 seh from mouse (only the C-terminus displayed)
20 LTA4 hydrolase
21 seh from mouse (complete dimer)
22 EH from Rhodococcus
23 EH from Rhodococcus
24 EH from Aspergillus
25
26 Structural Relationship between Mammalian Epoxide Hydrolases and other Enzymes Related by Sequence Similarity Catalytic Triad Mammalian meh? Haloalkane dehalogenase Mammalian seh
27 Enzymatic Mechanism of Epoxide Hydrolysis R H δ + δ δ + - Asp/Glu R - H H - Asp/Glu - Asp H H N NH His - Asp HN + NH His Step 1 Nucleophilic Attack R - H - Asp/Glu Step 2 Hydrolysis Asp H H N NH His seh meh Asp His Asp/Glu
28 Expected Effect of the meh Concentration on the Epoxide Steady State Concentration epoxide concentration [µm] 0,8 0,15 0,1 no meh 25 µm meh 0,05 50 µm meh time [s]
29 Steady State Kinetics of Epoxide Detoxification 1000 Epoxide steady state concentration [µm] Rate of epoxide formation [µm x s -1 ]
30 2-Pheny lethanol H H 1-Phenyl ethanol Correlation between Styrene- and Styrene xide-exposure and Biomarker Blood Levels of Healthy Non-Smokers (Data taken from Rappaport et al., Cancer Res. (1996) 56, pp ) Styrene Biomarker Styrene (n = 21) Styrene oxide (n = 8) CYP H 4-Hydroxystyrene Exhaled Styrene 0.948*** S-Albumin (α) * S-Albumin (β) S-DNA (1) Styrene-7,8-oxide GST Glutathion conjugates S-DNA (2) 0.434* EH SCEs * Average exposure level: Styrene = 50.5 mg/m 3 ; Styrene oxide = 129 µg/m 3 H H * p < 0.05; ** p < 0.01; *** p < Phenyl glycol UGT Glucuronide H ADH H H H N H Phenyl glyoxylic acid Mandelic acid Hippuric acid
31 Epoxide Hydrolase
32
33 Genotoxins Microsomal epoxide hydrolase (meh) Soluble epoxide hydrolase (seh) Signal molecules Epoxides Limonene epoxide hydrolase (LEH) Carbon source
34 EH from Agrobacterium at 2.1 Å seh from mouse at 2.8 Å EH from Aspergillus at 1.7 Å Nardini et al., J.Biol.Chem Argiriadi et al., PNAS 1999 Zou et al., Structure 2000 Leukotriene A 4 hydrolase from human at 1.95 Å EH from Rhodococcus at 1.2 Å Thunnissen et al., Nature Struct. Biol Arand et al., EMB J., in press
35 EH from Aspergillus
36 EH from Aspergillus
37 Evaluation of the Detoxification Efficacy of meh concentration [µm] 5 4,5 4 S real S ermittelt deducedb Pfrom P 3,5 3 2,5 2 1,5 1 0, ,2 0,4 0,6 0,8 1 time Zeit [s]
BIOMARKERS AND TOXICITY MECHANISMS 07 Mechanisms Metabolism & Detoxification. Luděk Bláha, PřF MU, RECETOX
BIOMARKERS AND TOXICITY MECHANISMS 07 Mechanisms Metabolism & Detoxification Luděk Bláha, PřF MU, RECETOX www.recetox.cz Metabolism and detoxification Chemicals enter body... mostly via food Pass directly
More informationMODULE No.26: Drug Metabolism
SUBJECT Paper No. and Title Module No. and Title Module Tag PAPER No. 9: Drugs of Abuse MODULE No. 26: Drug Metabolism FSC_P9_M26 TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction 3. Sites of Drug
More informationB. Incorrect! Compounds are made more polar, to increase their excretion.
Pharmacology - Problem Drill 04: Biotransformation Question No. 1 of 10 Instructions: (1) Read the problem and answer choices carefully, (2) Work the problems on paper as 1. What is biotransformation?
More informationPolar bodies are either introduced or unmasked, which results in more polar metabolites Phase I reactions can lead either to activation or
Polar bodies are either introduced or unmasked, which results in more polar metabolites Phase I reactions can lead either to activation or inactivation of the drug (i.e. therapeutic effects or toxicity)
More informationMEDCH 527 1/23/2017 HYDROLASES: Carboxylesterases and Epoxide Hydrolases
MEDCH 527 1/23/2017 HYDRLASES: Carboxylesterases and Epoxide Hydrolases References Testa, B. and Kramer, S.D. The Biochemistry of Drug Metabolism An Introduction. Part 3. Reactions of Hydrolysis and Their
More informationToxicant Disposition and Metabolism. Jan Chambers Center for Environmental Health Sciences College of Veterinary Medicine
Toxicant Disposition and Metabolism Jan Chambers Center for Environmental Health Sciences College of Veterinary Medicine chambers@cvm.msstate.edu Definitions Disposition Absorption passage across membrane.
More informationEnzyme Catalysis-Serine Proteases
Enzyme Catalysis-Serine Proteases Concepts to be learned Activation Energy Transition State Example: Proteases Requirements for proteolysis Families of proteases Protein Folds used by proteases for catalysis
More informationChapter 4. Drug Biotransformation
Chapter 4 Drug Biotransformation Drug Biotransformation 1 Why is drug biotransformation necessary 2 The role of biotransformation in drug disposition 3 Where do drug biotransformation occur 4 The enzymes
More informationChymotrypsin Lecture. Aims: to understand (1) the catalytic strategies used by enzymes and (2) the mechanism of chymotrypsin
Chymotrypsin Lecture Aims: to understand (1) the catalytic strategies used by enzymes and (2) the mechanism of chymotrypsin What s so great about enzymes? They accomplish large rate accelerations (10 10-10
More informationEPOXIDE HYDROLASES: Mechanisms, Inhibitor Designs, and Biological Roles
Annu. Rev. Pharmacol. Toxicol. 2005. 45:311 33 doi: 10.1146/annurev.pharmtox.45.120403.095920 Copyright c 2005 by Annual Reviews. All rights reserved First published online as a Review in Advance on September
More information2. Which of the following amino acids is most likely to be found on the outer surface of a properly folded protein?
Name: WHITE Student Number: Answer the following questions on the computer scoring sheet. 1 mark each 1. Which of the following amino acids would have the highest relative mobility R f in normal thin layer
More informationChapter 9. Biotransformation
Chapter 9 Biotransformation Biotransformation The term biotransformation is the sum of all chemical processes of the body that modify endogenous or exogenous chemicals. Focus areas of toxicokinetics: Biotransformation
More informationMetabolism of xenobiotics FM CHE 5-6
Metabolism of xenobiotics FM 3.5-10 CHE 5-6 Metabolism of xenobiotics Also called:! Biotransformation, or detoxification Primary metabolism secondary metabolism Goal: To make use of a compound or to facilitate
More informationMechanistic Toxicology
SECOND EDITION Mechanistic Toxicology The Molecular Basis of How Chemicals Disrupt Biological Targets URS A. BOELSTERLI CRC Press Tavlor & France Croup CRC Press is an imp^t o* :H Taylor H Francn C'r,,jpi
More informationPAPER No. : 16, Bioorganic and biophysical chemistry MODULE No. : 22, Mechanism of enzyme catalyst reaction (I) Chymotrypsin
Subject Paper No and Title 16 Bio-organic and Biophysical Module No and Title 22 Mechanism of Enzyme Catalyzed reactions I Module Tag CHE_P16_M22 Chymotrypsin TABLE OF CONTENTS 1. Learning outcomes 2.
More informationHelping the liver to detoxify mycotoxins
Helping the liver to detoxify mycotoxins Mycotoxin strategies have so far focused on binding compounds or detoxifying the compounds by feed additives. Animals however, can also detoxify mycotoxins themselves
More informationMetabolic Changes of Drugs and Related Organic Compounds
Metabolic Changes of Drugs and Related Organic Compounds 3 rd stage/ 1 st course Lecture 7 Shokhan J. Hamid 1 Phase II or Conjugation Reactions Phase I or functionalization reactions do not always produce
More informationA. B. C. D. E. F. G. H. I. J. K. Ser/Thr. Ser/Thr. Ser/Thr. Ser/Thr. Ser/Thr. Asn. Asn. Asn. Asn. Asn. Asn
A. B. C. D. E. F. "3 "3!4!3 Ser/Thr "3!4!3!4 Asn Asn Ser/Thr Asn!3!6 Ser/Thr G. H. I. J. K.!3 Ser/Thr Ser/Thr 4 4 2 2 6 3 6 Asn Asn Asn Glycosidases and Glycosyltransferases Introduction to Inverting/Retaining
More informationEH3 (ABHD9): the first member of a new epoxide hydrolase family with high activity for fatty acid epoxides
EH3 (ABHD9): the first member of a new epoxide hydrolase family with high activity for fatty acid epoxides Martina Decker, 1, * Magdalena Adamska, 1, * Annette Cronin, * Francesca Di Giallonardo, * Julia
More informationMetabolic Changes of Drugs and Related Organic Compounds
Metabolic Changes of Drugs and Related Organic Compounds 3 rd stage/ 1 st course Lecture 3 Shokhan J. Hamid 2 Metabolism plays a central role in the elimination of drugs and other foreign compounds from
More informationRole of metabolism in Drug-Induced Liver Injury (DILI) Drug Metab Rev. 2007;39(1):
Role of metabolism in Drug-Induced Liver Injury (DILI) Drug Metab Rev. 2007;39(1):159-234 Drug Metab Rev. 2007;39(1):159-234 Drug Metab Rev. 2007;39(1):159-234 A schematic representation of the most relevant
More informationCysteine Peptide Scientific Review, Dr. S. Dudek, DMV International
Cysteine Peptide Scientific Review, Dr. S. Dudek, DMV International Ethanol and Glutathione Reduced glutathione plays a critical role in cellular detoxification processes including the metabolism of peroxides,
More informationSTYRENE METABOLISM, GENOTOXICITY, AND POTENTIAL CARCINOGENICITY
Drug Metabolism Reviews, 38: 805 853, 2006 Copyright Informa Healthcare ISSN: 0360-2532 print / 1097-9883 online DOI: 10.1080/03602530600952222 STYRENE METABOLISM, GENOTOXICITY, AND POTEIAL CARCINOGENICITY
More informationDrug Metabolism Phase 2 conjugation reactions. Medicinal chemistry 3 rd stage
Drug Metabolism Phase 2 conjugation reactions Medicinal chemistry 3 rd stage 1 Phase II or Conjugation reactions 1. Glucuronic acid conjugation 2. Sulfate conjugation 3. Glycine and Glutamine conjugation
More informationLecture 8: Phase 1 Metabolism
Lecture 8: Phase 1 Metabolism The purpose of metabolism is to detoxify a drug, eliminate a drug or activate a drug. In metabolism there are two phases, Phase I and Phase II. Phase I is the introduction
More informationP450 CYCLE. All P450s follow the same catalytic cycle of;
P450 CYCLE All P450s follow the same catalytic cycle of; 1. Initial substrate binding 2. First electron reduction 3. Oxygen binding 4. Second electron transfer 5 and 6. Proton transfer/dioxygen cleavage
More informationUNIVERSITY OF GUELPH CHEM 4540 ENZYMOLOGY Winter 2005 Quiz #2: March 24, 2005, 11:30 12:50 Instructor: Prof R. Merrill ANSWERS
UNIVERSITY F GUELPH CHEM 4540 ENZYMLGY Winter 2005 Quiz #2: March 24, 2005, 11:30 12:50 Instructor: Prof R. Merrill ANSWERS Instructions: Time allowed = 80 minutes. Total marks = 30. This quiz represents
More informationPaper 9: ORGANIC CHEMISTRY-III (Reaction Mechanism-2) Module17: Reduction by Metal hydrides Part-II CHEMISTRY
Subject Chemistry Paper No and Title Module No and Title Module Tag 9: ORGANIC -III (Reaction Mechanism-2) 17: Reduction by Metal hydrides Part-1I CHE_P9_M17 Table of Contents 1. Learning Outcomes 2. Introduction
More informationThis student paper was written as an assignment in the graduate course
77:222 Spring 2003 Free Radicals in Biology and Medicine Page 0 This student paper was written as an assignment in the graduate course Free Radicals in Biology and Medicine (77:222, Spring 2003) offered
More informationPrevious Class. Today. Detection of enzymatic intermediates: Protein tyrosine phosphatase mechanism. Protein Kinase Catalytic Properties
Previous Class Detection of enzymatic intermediates: Protein tyrosine phosphatase mechanism Today Protein Kinase Catalytic Properties Protein Phosphorylation Phosphorylation: key protein modification
More informationChemical Mechanism of Enzymes
Chemical Mechanism of Enzymes Enzyme Engineering 5.2 Definition of the mechanism 1. The sequence from substrate(s) to product(s) : Reaction steps 2. The rates at which the complex are interconverted 3.
More informationThe importance of pharmacogenetics in the treatment of epilepsy
The importance of pharmacogenetics in the treatment of epilepsy Öner Süzer and Esat Eşkazan İstanbul University, Cerrahpaşa Faculty of Medicine, Department of Pharmacology and Clinical Pharmacology Introduction
More informationPHYSIOLOGY AND MAINTENANCE Vol. II Biotransformation of Xenobiotics and Hormones - Osmo Hanninen BIOTRANSFORMATION OF XENOBIOTICS AND HORMONES
BIOTRANSFORMATION OF XENOBIOTICS AND HORMONES Osmo Hänninen Department of Physiology, University of Kuopio, Finland Keywords: foreign compounds, xenobiotics, bioactivation, detoxification, oxidation, cytochrome
More informationThe Binding Mode of by Electron Crystallography
The Binding Mode of Epothilone A on α,β-tubulin by Electron Crystallography James H. Nettles, Huilin Li, Ben Cornett, Joseph M. Krahn, James P. Snyder, Kenneth H. Downing Science, Volume 305, August 6,
More informationGLUTATHIONE TRANSFERASES. Ralf Morgenstern Institute of Environmental Medicine Karolinska Institutet
GLUTATHIONE TRANSFERASES Ralf Morgenstern Institute of Environmental Medicine Karolinska Institutet GSTs How many enzymes Structures THREE SUPERFAMILIES SOLUBLE GLUTATHIONE-TRANSFERASES (25 kda, dimers)
More informationCutaneous metabolism progress in the new Century. Simon Wilkinson Medical Toxicology Centre Newcastle University, UK
Cutaneous metabolism progress in the new Century Simon Wilkinson Medical Toxicology Centre Newcastle University, UK APV Skin Forum Meeting Frankfurt Overview Importance in 2011 Historical perspective (pre
More information2. List routes of exposure in the order of most rapid response.
Practice Test questions: 1. What are the two areas of toxicology that a regulatory toxicologist must integrate in order to determine the "safety" of any chemical? 2. List routes of exposure in the order
More informationQUANTITATION OF THE METABOLIC ACTIVATION OF PHENANTHRENE IN SMOKERS: POTENTIAL USE IN THE ASSESSMENT OF LUNG CANCER SUSCEPTIBILITY
QUANTITATION OF THE METABOLIC ACTIVATION OF PHENANTHRENE IN SMOKERS: POTENTIAL USE IN THE ASSESSMENT OF LUNG CANCER SUSCEPTIBILITY A DISSERTATION SUBMITTED TO THE FACULTY OF THE GRADUATE SCHOOL OF THE
More informationChapter 19: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution 19.1: Nomenclature of Carboxylic Acid Derivatives (please read)
problem 18.33b - = 128.7 123.9 179.7 146.8 147.4 45.3 18.0 161 hapter 19: arboxylic Acid Derivatives: ucleophilic Acyl Substitution 19.1: omenclature of arboxylic Acid Derivatives (please read) carboxylic
More informationGenetics and Genomics: Influence on Individualization of Medication Regimes
Genetics and Genomics: Influence on Individualization of Medication Regimes Joseph S Bertino Jr., Pharm.D., FCCP Schenectady, NY USA Goals and Objectives To discuss pharmacogenetics and pharmacogenomics
More informationHepatocarcinogenesis: chemical models
Hepatocarcinogenesis: chemical models Introduction Earliest observations that human exposure to certain chemicals is related to an increased incidence of cancer John Hill 1761 Nasal cancer in snuff users
More informationdna oestrogen GENOTYPE REPORT Patient Name: Date of Birth: Sample Number: Referring Practitioner: Date Reported:
dna oestrogen GENOTYPE REPORT Patient Name: Date of Birth: Sample Number: Referring Practitioner: Date Reported: BACKGROUND TO THE ANALYSIS The importance of both oestrogen and progesterone in breast cancer
More information6. The catalytic mechanism of arylsulfatase A and its theoretical investigation
6. The catalytic mechanism of arylsulfatase A and its theoretical investigation When the crystal structure of arylsulfatase A was solved, a remarkable structural analogy to another hydrolytic enzyme, the
More informationChemical Carcinogenesis November
Chemical Carcinogenesis November 17 2016 Cancer Incidence and Death rates by Geography Epidemiological studies of cancer incidence indicate: 1. The incidence rates for specific organ tumors varies among
More informationCHAPTER 9: CATALYTIC STRATEGIES. Chess vs Enzymes King vs Substrate
CHAPTER 9: CATALYTIC STRATEGIES Chess vs Enzymes King vs Substrate INTRODUCTION CHAPTER 9 What are the sources of the catalytic power and specificity of enzymes? Problems in reactions in cells Neutral
More informationThe protective role of antioxidants and the aldoketo reductase AKR7A2 against toxic aldehydes in cell lines
UNIVERSITA DEGLI STUDI DI PARMA Dottorato di ricerca in Biochimica e Biologia Molecolare Ciclo XXIV The protective role of antioxidants and the aldoketo reductase AKR7A2 against toxic aldehydes in cell
More informationExam 3 Fall 2011 Dr. Stone
Exam 3 Fall 2011 Dr. Stone Name rate forward = k forward [reactants] K eq = [products] CH 3 COOH Ka = 1.78 x10-5 -2 H 2 P0 4 = 3.98 x 10-13 rate reverse = k reverse [products] [reactants] H 3 P0 4 Ka =
More informationA Regional Model of Lung Metabolism for Improving Species Dependent Descriptions of 1,3-Butadiene and its Metabolites
A Regional Model of Lung Metabolism for Improving Species Dependent Descriptions of 1,3-Butadiene and its Metabolites Harvey Clewell, Jerry Campbell, and Cynthia VanLandingham ENVIRON and The Hamner Institutes
More informationChapter 6: Estrogen Metabolism by Conjugation
Chapter 6: Estrogen Metabolism by Conjugation Rebecca Raftogianis, Cyrus Creveling, Richard Weinshilboum, Judith Weisz The involvement of estrogens in carcinogenic processes within estrogen-responsive
More informationChemical Carcinogenesis November
Chemical Carcinogenesis November 18 2014 Cancer Incidence and Death rates by Geography Epidemiological studies of cancer incidence indicate: 1. The incidence rates for specific organ tumors varies among
More informationPrevious Class. Today. Term test I discussions. Detection of enzymatic intermediates: chymotrypsin mechanism
Term test I discussions Previous Class Today Detection of enzymatic intermediates: chymotrypsin mechanism Mechanistic Understanding of Enzymemediated Reactions Ultimate goals: Identification of the intermediates,
More informationMEDCHEM 570. First Midterm. January 30, 2015
Name MEDCHEM 570 First Midterm January 30, 2015 Instructions: Exam packet totals 7 pages. The last page has a 5 points extra credit question. If you need additional space for a question go to the back
More informationChapter 20: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution
hapter 20: arboxylic Acid Derivatives: ucleophilic Acyl Substitution 20.1: omenclature of arboxylic Acid Derivatives (please read) carboxylic acid -oic acid ' ester -oate ' lactone cyclic ester l acid
More informationAn Introduction to Enzyme and Coenzyme Chemistry, 2nd Ed. T. D. H. Bugg, Blackwell Science, Oxford, 2004
Combinatorial synthesis of linchpin β-turn mimic 1 2 DCC, BT 1 2 n -tbu 1 n -tbu 1) 2 FMC DCC, BT 2) piperidine 1 2 2 n -tbu 3 DCC, BT 1 2 n -tbu 3 1) Ph 3 P 2) cyclization 3) CF 3 C 2 2 1 n 3 2 Evaluated
More informationCellular functions of protein degradation
Protein Degradation Cellular functions of protein degradation 1. Elimination of misfolded and damaged proteins: Environmental toxins, translation errors and genetic mutations can damage proteins. Misfolded
More informationChimica Farmaceutica. Pharmacokinetics and related topics
Chimica Farmaceutica Pharmacokinetics and related topics Drug Metabolism When drugs enter the body, they are subject to attack from a range of metabolic enzymes. The role of these enzymes is to degrade
More informationGenomics and proteomics offers new hopes towards a personalized approach to lung cancer prevention and treatment
Electronic Journal of Biotechnology ISSN: 0717-3458 Vol.6 No.3, Issue of December 15, 2003 2003 by Pontificia Universidad Católica de Valparaíso -- Chile BIOTECHNOLOGY ISSUES FOR DEVELOPING COUNTRIES Genomics
More informationCo-exposure of Arsenite and Benzo(a)pyrene: : Effect of glutathione on DNA adduct levels
Co-exposure of Arsenite and Benzo(a)pyrene: : Effect of glutathione on DNA adduct levels Glenn Talaska 1 Jay Vietas 1,2 1 Department of Environmental Health, University of Cincinnati, 2 United States Air
More informationChimica Farmaceutica. Pharmacokinetics and related topics
Chimica Farmaceutica Pharmacokinetics and related topics Phase I transformations catalysed by cytochrome P450 enzymes The enzymes that constitute the cytochrome P450 family are the most important metabolic
More informationGlycosidic bond cleavage
Glycosidases and Glycosyltransferases Introduction to Inverting/Retaining Mechanisms Inhibitor design Chemical Reaction Proposed catalytic mechanisms Multiple slides courtesy of Harry Gilbert with Wells
More informationCHAPTER 21: Amino Acids, Proteins, & Enzymes. General, Organic, & Biological Chemistry Janice Gorzynski Smith
CHAPTER 21: Amino Acids, Proteins, & Enzymes General, Organic, & Biological Chemistry Janice Gorzynski Smith CHAPTER 21: Amino Acids, Proteins, Enzymes Learning Objectives: q The 20 common, naturally occurring
More informationCHM 341 C: Biochemistry I. Test 2: October 24, 2014
CHM 341 C: Biochemistry I Test 2: ctober 24, 2014 This test consists of 14 questions worth points. Make sure that you read the entire question and answer each question clearly and completely. To receive
More informationMechanisms of Enzymes
Mechanisms of Enzymes Presented by Dr. Mohammad Saadeh The requirements for the Pharmaceutical Biochemistry I Philadelphia University Faculty of pharmacy How enzymes work * Chemical reactions have an energy
More informationMechanism of Detoxification
Mechanism of Detoxification Prof.Dr. Hedef Dhafir El-Yassin 1 Objectives: 1. To list the detoxification pathways 2. To describe detoxification pathways and phases in the liver, 2 3 4 o Xenobiotics are
More informationAdenosine triphosphate (ATP)
Adenosine triphosphate (ATP) 1 High energy bonds ATP adenosine triphosphate N NH 2 N -O O P O O P O- O- O O P O- O CH 2 H O H N N adenine phosphoanhydride bonds (~) H OH ribose H OH Phosphoanhydride bonds
More informationWiring diagram. A.-F. Miller, 2008, pg 1. Garrett & Grisham Fig
Wiring diagram 1 Garrett & Grisham Fig. 32.22 Gradients as signalling devices Nerve impulses propagated at 100 m/s Neuronal impulses are carried along axons as electrical signals: transient changes in
More informationEnzyme Catalytic Mechanisms. Dr. Kevin Ahern
Enzyme Catalytic Mechanisms Dr. Kevin Ahern Cleave Peptide Bonds Specificity of Cutting Common Active Site Composition/Structure Mechanistically Well Studied Chymotrypsin Chymotrypsin Catalysis H2O Chymotrypsin
More informationChapter 10. Carboxylic Acids and Derivatives. Naming Carboxylic Acids and Derivatives. Carboxylic Acids: RCOOH (RCO 2 H)
Chapter 10 Carboxylic Acids and Derivatives Naming Carboxylic Acids and Derivatives Carboxylic Acids: RCH (RC 2 H) The functional group of a carboxylic acid is a carboxyl group (carbonyl & hydroxyl group)
More informationMetabolism. Objectives. Metabolism. 26 July Chapter 28 1
Metabolism bjectives Describe various processes by which drugs are metabolized Describe induction and inhibition of metabolism Use the venous equilibration model to describe hepatic clearance and the effect
More informationBiomarkers of acrylamide
Biomarkers of acrylamide Jan Alexander Department of Food Safety and Nutrition EFSA Colloquium on Acrylamide, Tabiano, Italy, 22-23 May 2008 Scheme of biomarkers Exposure Internal concentration Internal
More informationMetabolic Changes of Drugs and Related Organic Compounds. Oxidative Reactions. Shokhan J. Hamid. 3 rd stage/ 1 st course Lecture 6
Metabolic Changes of Drugs and Related Organic Compounds Oxidative Reactions 3 rd stage/ 1 st course Lecture 6 Shokhan J. Hamid B. OXIDATION INVOLVING CARBON OXYGEN SYSTEMS: Oxidative O-dealkylation of
More informationEnzyme Mimics. Principles Cyclodextrins as Mimics Corands as Mimics Metallobiosites
Enzyme Mimics Principles Cyclodextrins as Mimics Corands as Mimics Metallobiosites 1 Enzyme Mimics Biochemical systems: Binding is a trigger to events: Binding induces a conformational change in the receptor
More informationJoan Eilstein. Metabolizing Enzymes in Human Skin. from SkinEthic TM. ADMET - Metabolism. L OREAL Advanced Research
Update in the Characterization ti of Metabolizing Enzymes in Human Skin and Reconstructed t Human Skin Models from SkinEthic TM Joan Eilstein ADMET - Metabolism Predictive Methods and Models Development
More informationOPINION of the French Agency for Environmental and Occupational Health Safety
The Director General Maisons-Alfort, France, 15 June 2009 OPINION of the French Agency for Environmental and Occupational Health Safety Relating to establishing carcinogenic HTVs by inhalation for carbon
More informationObjectives Making CYP450, Drug Interactions, & Pharmacogenetics Easy
Objectives Making, Drug Interactions, & Pharmacogenetics Easy Anthony J. Busti, MD, PharmD, FNLA, FAHA Describe the differences between phase I and phase II metabolic pathways. Identify the most common
More informationFunctional Derivatives of Carboxylic Acids
Functional Derivatives of Carboxylic Acids Derivatives of Carboxylic Acids are compounds in which the OH of a carboxyl group has been replaced by CI, OOCR, NH2, or OR'to convert acid chlorides,anhydrides,
More informationDirect Regioselective Esterification at O-2 of β- Cyclodextrin and Hydrolysis by Neighboring-group Participation
ISSN: 0973-4945; CDEN ECJHA E- Chemistry http://www.ejchem.net 2012, 9(3), 1562-1568 Direct Regioselective Esterification at -2 of β- Cyclodextrin and Hydrolysis by Neighboring-group Participation ZHI-ZHNG
More informationAn Introduction to Enzyme Structure and Function
An Introduction to Enzyme Structure and Function Enzymes Many reactions in living systems are similar to laboratory reactions. 1. Reactions in living systems often occur with the aid of enzymes. 2. Enzymes
More informationMammalian soluble epoxide hydrolase is identical to liver hepoxilin
Mammalian soluble epoxide hydrolase is identical to liver hepoxilin hydrolase Annette Cronin*, Martina Decker and Michael Arand Institute of Pharmacology and Toxicology, University of Zurich, Winterthurer
More informationMETABOLISM. Ali Alhoshani, B.Pharm, Ph.D. Office: 2B 84
METABOLISM Ali Alhoshani, B.Pharm, Ph.D. ahoshani@ksu.edu.sa Office: 2B 84 Metabolism By the end of this lecture, you should: Recognize the importance of biotransformation Know the different sites for
More informationStudent Biochemistry I Homework III Due 10/13/04 64 points total (48 points based on text; 16 points for Swiss-PDB viewer exercise)
Biochemistry I Homework III Due 10/13/04 64 points total (48 points based on text; 16 points for Swiss-PDB viewer exercise) 1). 20 points total T or F; if false, provide a brief rationale as to why. Only
More informationoptimal health for life genotype report Name: Date of Birth: Sample Number: Referring Practitioner: Date Reported:
optimal health for life genotype report Name: Date of Birth: Sample Number: Referring Practitioner: Date Reported: DNA Oestrogen - Genotype Report Page No. 2 of 9 Welcome to your dna oestrogen report From
More informationEnzymes. Enzyme. Aim: understanding the basic concepts of enzyme catalysis and enzyme kinetics
Enzymes Substrate Enzyme Product Aim: understanding the basic concepts of enzyme catalysis and enzyme kinetics Enzymes are efficient Enzyme Reaction Uncatalysed (k uncat s -1 ) Catalysed (k cat s -1 )
More informationAN ABSTRACT OF THE THESIS OF. Hollie Isabel Swanson for the degree of Master of Science Food Science and Technology presented on June 3, 1988
AN ABSTRACT OF THE THESIS OF Hollie Isabel Swanson for the degree of Master of Science Food Science and Technology presented on June 3, 1988 in Title: Effects of the Anticarcinogen Indole-3-carbinol on
More informationGlutathione Conjugation!
Glutathione Conjugation! I. Glutathione Metabolism, Homeostasis! II. GSH Conjugation Reactions! III. Glutathione S-Transferases! IV. Reactions of GSH Conjugates Suggested Reading Bernard Testa, Stefanie
More informationRegulation of P450. b. competitive-inhibitor but not substrate. c. non-competitive inhibition. 2. Covalent binding to heme or protein
10. Inhibition of P450 Regulation of P450 a. competitive-2 chemicals metabolized by same isoform b. competitive-inhibitor but not substrate c. non-competitive inhibition 11. Induction of P450 1. Non-covalent
More information1. Measurement of the rate constants for simple enzymatic reaction obeying Michaelis- Menten kinetics gave the following results: =3x10-5 = 30μM
1. Measurement of the rate constants for simple enzymatic reaction obeying Michaelis- Menten kinetics gave the following results: k 1 = 2 x 10 8 M -1 s -1, k 2 = 1 x 10 3 s -1, k 3 = 5 x 10 3 s -1 a) What
More informationSUPPORTING INFORMATION FOR. A Computational Approach to Enzyme Design: Using Docking and MM- GBSA Scoring
SUPPRTING INFRMATIN FR A Computational Approach to Enzyme Design: Predicting ω- Aminotransferase Catalytic Activity Using Docking and MM- GBSA Scoring Sarah Sirin, 1 Rajesh Kumar, 2 Carlos Martinez, 2
More informationChemistry and Biochemistry 153A Spring Exam 2
hemistry and Biochemistry 153A Spring 2011 Exam 2 Instructions: You will have 1 hour 45 minutes to complete the exam. You may use a pencil (recommended) or blue or black ink pen to write your answers.
More informationChapter 20: Carboxylic Acids and Nitriles شیمی آلی 2
Chapter 20: Carboxylic Acids and Nitriles شیمی آلی 2 Dr M. Mehrdad University of Guilan, Department of Chemistry, Rasht, Iran m-mehrdad@guilan.ac.ir Based on McMurry s Organic Chemistry, 7 th edition The
More information1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids
Amino acids 1-To know what is protein 2-To identify Types of protein 3- To Know amino acids 4- To be differentiate between essential and nonessential amino acids 5-To understand amino acids synthesis Amino
More informationFIRST BIOCHEMISTRY EXAM Tuesday 25/10/ MCQs. Location : 102, 105, 106, 301, 302
FIRST BIOCHEMISTRY EXAM Tuesday 25/10/2016 10-11 40 MCQs. Location : 102, 105, 106, 301, 302 The Behavior of Proteins: Enzymes, Mechanisms, and Control General theory of enzyme action, by Leonor Michaelis
More informationPractice Problems 3. a. What is the name of the bond formed between two amino acids? Are these bonds free to rotate?
Life Sciences 1a Practice Problems 3 1. Draw the oligopeptide for Ala-Phe-Gly-Thr-Asp. You do not need to indicate the stereochemistry of the sidechains. Denote with arrows the bonds formed between the
More informationWelcome. to your dna osetrogen report. Welcome to your dna oestrogen report
optimal health for life Welcome to your dna osetrogen report Date of Birth: Date Reported: Sample Number: Referring Practitioner: Welcome to your dna oestrogen report From your buccal swab sample we have
More informationMetabolism of amino acids. Vladimíra Kvasnicová
Metabolism of amino acids Vladimíra Kvasnicová Classification of proteinogenic AAs -metabolic point of view 1) biosynthesis in a human body nonessential (are synthesized) essential (must be present in
More informationIntroduction Required data for substance identity purposes Dossier preparation (introduction) Substance identity of
Overview Introduction Required data for substance identity purposes Dossier preparation (introduction) Substance identity of Mono-constituent substances Multi-constituent substances with additional identifiers
More informationPresentation of the SEURAT-1 COSMOS Project: Prediction of Systemic Toxicity Following Dermal Exposure
Presentation of the SEURAT-1 COSMOS Project: Prediction of Systemic Toxicity Following Dermal Exposure Mark Cronin 1, Elena Fioravanzo 2, Judith Madden 1, Andrea Richarz 1, Lothar Terfloth 3, Fabian Steinmetz
More informationIntroduction to the Toxicology of the Liver (9-Aug-1999)
In: Veterinary Toxicology, V. Beasley (Ed.) Publisher: International Veterinary Information Service (www.ivis.org), Ithaca, New York, USA. Introduction to the Toxicology of the Liver (9-Aug-1999) V. Beasley
More informationPrevious Class. Today. Spectrophotometry Spectrofluorimetry Radioactive procedures. ph dependence of Enzyme Catalysis (focus on pgs.
Spectrophotometry Spectrofluorimetry Radioactive procedures Previous Class Today ph dependence of Enzyme Catalysis (focus on pgs. 169-176) ph Effects on Enzyme Activity Structural Considerations: Extreme
More informationCoenzymes, vitamins and trace elements 209. Petr Tůma Eva Samcová
Coenzymes, vitamins and trace elements 209 Petr Tůma Eva Samcová History and nomenclature of enzymes 1810, Gay-Lussac made an experiment with yeats alter saccharide to ethanol and CO 2 Fermentation From
More information