Ian Brown AHVLA-Weybridge ESNIP3 coordinator
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1 Coordinated surveillance of influenza viruses in European pigs: Enhanced Virological and Epidemiological analysis from the European Surveillance Network for Influenza in Pigs (ESNIP3) Ian Brown AHVLA-Weybridge ESNIP3 coordinator
2 ESNIP3 objectives Expand knowledge of epidemiology and evolution of SIVs in Europe Surveillance for influenza in pigs; harmonised Contemporary data available at EU level Rapid virus characterisation Use of new technologies/improvements linking datasets Antigenic characterisation/mapping Heterogeneity defined; cartography Genetic characterisation Phylogeography Genotypic data Provide timely insights to veterinary public health risk EU SI Virus database and repository Global dissemination of information/exchange Network interaction 4/17/2013 2
3 Project consortia 25 partners: Veterinary institutes Belgium, UK, The Netherlands, Italy, France, Germany, Denmark, Poland, Spain, Israel, Hungary, Finland, Greece, USA, China Vaccine manufacturers Merial (France), IDT (Germany) & Hipra (Spain) 4/17/2013 3
4 WP2 - Summary of the surveillance programmes conducted by partners Partners Country Virological surveillance Passive Active Serological surveillance P1 - AHVLA UK X - - Who is conducting the surveillance programs? VLA (Defra Surveillance program) + Collaboration with Merial P2 - UGent Belgium X - X UGent + Collaboration with Merial P3 - Anses France X (X) X Anses-Ploufragan (NRL for swine influenza) + Ministry and Vet (national surveillance network) + Collaboration with Merial P4 - IZLER Italy X - X ISZLER + Diagnosis requests from vets + Collaboration with Merial P5 - VET-DTU Denmark X (X) X VET-DTU + Collaboration with Merial P6 - NVRI Poland X (X) X NVRI (swine diseases department) + Collaboration with Merial P7 - LCV Spain X - - Spanish Surveillance program + Collaboration with Merial P8 - IDT Germany X (X) X IDT P9 - EVIRA Finland X - - EVIRA P10 -KVI Israel X (X) X KVI P11 - CAO Hungary X - - CAO - Diagnosis requests from vets + Collaboration with Merial P12 - CVI The Netherlands X - X CVI P13 - UTH Greece X (X) X UTH + Collaboration with Merial P21 - Merial France/Europe X - - P22 - Hipra Spain X - - Hipra Merial + Collaboration with partners in several European countries
5 Current status Country Nov10/Oct12 Partner Number of herds investigated a Number of positive cases Frequency of positive cases (%) United-Kingdom P1-AHVLA ,87 Numbers of outbreaks: highly variable depending on partners/countries > Related to surveillance programs or to regional SI epidemiology? Frequencies of positive cases: highly variable depending on partners/countries > Related to surveillance programs or to SI epidemiology or to vet s experience or to diagnostic methods? Belgium P2-UGhent Netherlands P2-UGhent ,96 P12-CVI ,52 France P3-Anses ,9 Italy P4-IZSLER ,40 Denmark P5-DTU ,69 Poland P6-NVRI Slovakia P6-NVRI ,78 Spain P7-LCV P22-HIPRA ,25 Germany P8-IDT ,2 P17-FLI ,08 P2-UGhent Finland P9-EVIRA ,20 Israel P10-KVI 7?? Hungary P11-CAO ,37 Greece P13-UTH ,6 Total ,74
6 Data from preliminary molecular and/or antigenic subtyping (number of viruses detected within each lineage when known) (to be updated after sequencing) Country Partner Number of subtyped viruses b Av-like sw H1N1 H1N1 H3N2 H1N2 Other lineages Reass. sw Hu-like Hu-like Reass. sw reass. pdmlike sw Other pdm-like H1N1 (hulike HA) H3N2 H1N2 c like HA) d reass. sw reass. sw H1N2 (av- sw H1N1 HxNx United-Kingdom P1-AHVLA 39 2? ??? Belgium P2-UGhent 20 11? 0 8 1?? 0 Netherlands P2-UGhent 20 10? 0 5 1?? 0 P12-CVI France P3-Anses Italy P4-IZSLER Denmark P5-DTU Poland P6-NVRI Slovakia P6-NVRI Spain P7-LCV P22-HIPRA Germany P8-IDT P17-FLI P2-UGhent 1 0? ? 0 Finland P9-EVIRA Israel P10-KVI 0???????? Hungary P11-CAO Greece P13-UTH Total Frequency (%) of each lineage 52,78 0,38 9,99 9,05 15,74 7,54 3, % belong to enzootic "avian-like swine H1N1" lineage (1979) 16% belong to enzootic "human like reassortant swine H1N2" lineage (1994) 9% belong to enzootic "human-like reassortant swine H3N2" lineage (1984) 8% are reassortants between enzootic SIVs 14% are pdm-like viruses or reassortants that have acquired gene(s) from H1N1pdm
7 Finland Denmark United Kingdom Belgium Netherlands Germany Poland France Slovakia Hungary Italy Spain Greece
8 Regional variation in the epidemiology of SI in Europe (ESNIP3) H1avN1 (53%) H3N2 (9%) H1huN2 (16%) Enzootic lineages rh1hun1 and rh1avn2 (8%) H1N1pdm and reass. (14%) Epizootic lineages (occasional detections)
9 PCR ring trial - conclusions Most of the participants were able to detect influenza A virus genome, especially when M-gene as targeted NP gene was less frequently used Conventional RT-PCR was less sensitive than RRT-PCR Specific detection of H3N2v confirmed
10 Results Swine influenza A H1 viruses 51 antigens 8 hyperimmune sera UoC, Department of Zoology
11 A/swine/H1/ A/sw/England/2008 A/sw/Scotland/410440/19 94 H1N2 H1N1 A/sw/Italy/71251/2 005 pdmh1 11
12 Statistics: Total samples received
13 Results: Phylogenetic analysis of H1 Background data taken from: TTY Lam et al. (2011) J. Virol Courtesy of TTY Lam, Oxford Zoology Group
14 Results: Phylogenetic analysis of MP Pandemic 2009 Courtesy of TTY Lam, Oxford Zoology Group
15 H1N2/pdm09 reassortants in UK swine H1N2/pdm09 reassortant virus first isolated in UK in April 2010 (Howard et al., EID 2011) Hu-like swine H1N2 (HA, NA) pdm09 (internal genes) Methods: Egg grown virus HI tests for subtyping RNA extraction and partial gene sequencing (>180bp) BLAST analysis
16 Genotyping 60 full genomes from 11 countries ESNIP3
17 Genotypic variation in European SIVs Avian like H1N1 No reassortment with pdm09 France N2 (1 virus!) H1N2 Majority av-like x human H1 & N2 UK viruses all now pdm09 IPG Denmark H1N2 HA av-like H3N2 All as previous av-like IPG No pdm to date! my presentation H1pdm09 All pdm09 constellation; 1 exception NL N2 from H1N2
18 Conclusions Surveillance approaches harmonised Four viruses cocirculating Significant regional variation Diagnostics fit for purpose Preliminary antigenic maps for H1 Genomic data generated- genotypic evolution including with pdm09 Data/knowledge exchanged with other networks, official bodies
19 ESNIP1 Thanks to EU! ESNIP2 Co ordinator Kristien Van Reeth, UG ESNIP3 4/17/2013 Coordinator Ian Brown, AHVLA, UK 19
20 Consortium Name No. Country Name No. Country AHVLA 1 UK WTSI 14 UK UGent 2 Belgium UCAM 15 UK ANSES 3 France UOXF.AT 16 UK ISZLER 4 Italy FLI 17 Germany DTU 5 Denmark IZSV 18 Italy NVRI 6 Poland USDA 19 USA LCV 7 Spain HVRI 20 China IDT 8 Germany MSS 21 France EVIRA 9 Finland HIPRA 22 Spain KVI 10 Israel AHT 23 UK CAO 11 Hungary AFBI 24 UK CVI 12 Netherlands UTH 13 Greece
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