Global antigenic cartography publication, ongoing cross H1 and H3 antigenic characterisation
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1 Global antigenic cartography publication, ongoing cross H1 and H3 antigenic characterisation OFFLU SIV Group technical meeting, March 2014 University of Minnesota, Minneapolis, USA WHO Collaborating Center for Modeling, Evolution, and Control of Emerging Infectious Diseases and Centre for Pathogen Evolution, Department of Zoology, University of Cambridge
2 Questions What are the antigenic relationships among swine influenza H1 and H3 viruses that have circulated in the global pig population and how have they evolved? What is the standing antigenic diversity today? Geographic distribution and relative antigenic differences among regions? Where are viruses circulating in pigs positioned antigenically relative to current and previously circulating human H1 and H3 s?
3 Dataset HI assay data, turkey RBC s, swine and ferret sera cross-validation experiments to check that swine sera = ferret sera defined antigenic distances for both H1 and H3 global swine flu data merging achieved by NADC swine serum panel sharing among partners Antigenic data: U.S, Canada, EU (numerous countries), Hong Kong (slaughterhouse sampling), Vietnam, Japan + human data Genetic data: add Thailand, Australia, Argentina, plus Genbank, plus representative human strains!3
4 Swine influenza A viruses H3 North America Europe Asia
5 Swine influenza A viruses H3 H1 North America Europe Asia
6 Human and swine influenza A viruses H3 Human Swine
7 Human and swine influenza A viruses H3 H1 Human Swine
8 Antigenic characterisation Methods, dimensions, scale 6
9 Antigenic characterisation Methods, dimensions, scale 6
10 Antigenic characterisation Methods, dimensions, scale 15 AU 6
11 Antigenic characterisation Methods, dimensions, scale 15 AU 6
12 Antigenic characterisation Methods, dimensions, scale 33 AU 15 AU 6
13 Antigenic characterisation Methods, dimensions, scale 33 AU 15 AU 6
14 Antigenic characterisation Methods, dimensions, scale 2D 33 AU 15 AU 6
15 Antigenic characterisation Methods, dimensions, scale 2D 3D 33 AU 15 AU 6
16 Antigenic characterisation Methods, dimensions, scale 2D 3D 33 AU 15 AU 6
17 Human and swine influenza A viruses: H3 H /2004/2010 8
18 Human and swine influenza A viruses: H3 H /2004/2010 8
19 Human and swine influenza A viruses: H3 H /2004/2010 8
20 Human and swine influenza A viruses: H3 H3 ````` ` /2004/2010 8
21 Human and swine influenza A viruses: H3 H3 ````` ` /2004/2010 8
22 Human and swine influenza A viruses: H3 H3 ````` ` /2004/2010 8
23 Human and swine influenza A viruses: H3 H3 ````` ` ````` `` /2004/2010 8
24 Human and swine influenza A viruses: H3 H3 ````` ` ````` `` /2004/2010 8
25 Human and swine influenza A viruses: H3 H3 ````` ` ````` `` /2004/2010 8
26 Human and swine influenza A viruses: H3 H3 ````` ` ````` `` /2004/2010 8
27 Human and swine influenza A viruses: H3 H3 ````` ` ````` `` /2004/2010 8
28 Human and swine influenza A viruses: H
29 Evolution by introduction 8
30 Avian and Classical human H1 seasonal Antigenic distance from first detected strain Antigenic distance from first detected strain Time Time
31
32 Discussion Comments on the results???!! Publication: next steps a) human serum panel! b) which journal if no serum panel data!! Long term benefit to surveillance and animal/public health?! Do we need to advocate for global risk assessment mechanism/ continuous antigenic monitoring as well as sequence data?
33 Acknowledgements Viroscience, Department of Virology, Erasmus Medical Center Rotterdam (NL) Ron Fouchier Josanne Verhagen Miranda de Graaf Pascal Lexmond Oanh Vuong Theo Bestebroer Bjorn Koel Kim Westgeest Walter Beyer Ruud van Beek Monique Spronken Chantal Baas Pascal Lexmond Jan de Jong Guus Rimmelzwaan Ab Osterhaus! St Jude Children s Research Hospital (USA) Robert Webster, Scott Krauss, Richard Webby! HKU (Hong Kong) and Duke University, Singapore Malik Peiris,! AHVLA (UK) Ian Brown, Jill Banks, Sharon Brookes, Scott Reid,, swine strains also contributed by Chris Olsen! ESNIP 3 consortium partners DTU: Lars Larsen, Ramona Trebbien Wellcome Trust Sanger Institute: Paul Kellam and Simon Watson!!!!! USDA/ARS/NADC Amy Vincent Alessio Lorusso Michelle L. Harland, David Alt, Darrell O. Bayles, Kelly Lager USDA/APHIS/NVSL Sabrina L. Swenson University of Minnesota Marie R. Culhane Canadian Food Inspection Agency John Pasick Charles Nfon WHO Collaborating Center for Modeling, Evolution, and Control of Department of Veterinary Medicine, Emerging Infectious Diseases and Centre for Pathogen Evolution, University of Cambridge University of Cambridge Colin Russell Derek Smith, David Burke, Eugene Skepner, Terry Jones, Ana Mosterin,! Judy Fonville, Gene Selkov! OFFLU Global Swine group Harbin Veterinary Research Institute H Chen Food and Agriculture Organization of the United Nations (FAO) F Claes and G Dauphin CDC Atlanta R Donis World Organisation for Animal Health (OIE) K Hamilton and G Pavade: World Health Organisation (WHO) E Mumford Department of Animal Health, National Centre for Veterinary Diagnostics, Vietnam T Nguyen National Institute of Animal Health, Bangkok, Thailand B Nuansrichy Instituto de Virologıa INTA, Buenos Aires A Pereda National Institute of Animal Health, Ibaraki T Saito Ghent University K Van Reeth Australian Animal Health Laboratory F Wong EMBRAPA Swine and Poultry J Ciacci-Zanella!! Funding support of USDA-ARS and APHIS, USA,! ESNIP3:FP7#
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