Development and Current Situation FMD for Asia and the Pacific
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- Virgil Powers
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1 Development and Current Situation FMD for Asia and the Pacific OIE Regional Workshop on Preparation and Submission of Dossiers for the Official Recognition of CFS and for the Endorsement of National Official Control Programme for FMD in Asia and the Pacific Tokyo, June 2017 Wilai Linchongsubongkoch Regional Reference Laboratory for FMD in South East Asia National Institute of Animal Health Department of Livestock Development, Thailand
2 Global status of FMD showing distribution of regional virus pools Source: WRL, Pirbright, UK
3 FMD Status in South East Asia (pool 1) * Serotype O - SEA/Mya98 - ME-SA/Ind 2001d * Serotype A ; ASIA/Sea-97 * Serotype Asia1: ASIA/ Gr.VIII (Myanmar, Jan 2017) * FMD free country : Philippine, Brunei, Indonesia (1986) * Malaysia : Free in Sabah and Salawak FMD Free Zone FMD Infected Areas
4 1.1 Antigen ELISA typing/ RT-PCR 1. FMD status in SEA, 2016 Diagnostic result by ELISA typing in 2016 (Thailand) Diagnostic result by rrt-pcr in 2016 (Thailand) 25.60% 20.20% 54.20% 8.70% % O A NVD Pos Neg Country total Serotype O Results of antigen ELISA typing Serotype A Serotype Asia-1 No virus detected Positive RT-PCR negative Thailand Lao PDR 47* * - 47 Myanmar Cambodia Lao PDR* Due to less volume of initial fluid and bad quality of specimen were received, ELISA typing and rrt-pcr were negative all
5 2. FMD status in SEA, 2017 (Jan May) ELISA typing results in 2017 (Jan-May (Thailand) RT-PCR results in 2017 (Jan-May) (Thailand) O A NVD Pos Neg Year Country Total ELISA typing RT-PCR O A Asia1 NVD Positive Negative 2016 Lao PDR 47* Cambodia 39** Myanmar Lao PDR Myanmar * Oro-nasal swap= 44, tissue = 3 ** some of them were saliva
6 3. Strain characterization 3.1 Summary of vaccine matching of type O in Year O/189/87 Thai vaccine strain r-value range n Thailand Thailand Lao PDR 47* Not Done Myanmar 22* Not Done 2017 Thailand On going Original samples were nasal swaps, therefore virus isolation could not be done, due to less virus obtained and also bacterial contamination were obtained in these samples
7 3.2 Summary of vaccine matching of type A in Year Country n A/Lopburi/2012 A/Sakolnakorn/ Thailand Lao PDR ND ND ND Myanmar ND ND ND 2017 Thailand Vaccine matching of FMDV type A in Thailand during , compare between A/Lopburi/2012 and A/Sakolnakorn/97 vaccine strain r-value of FMDV type A /Lopburi/2012 in Thailand during % r value r-value of FMDV type A/Sakolnakorn/97 in Thailand during % r-value
8 3.3 Summary the FMD outbreak in SEA region during , Pool 1 (Jan May) Country Thailand Lao PDR Serotype Strain Vaccine Serotype Strain Vaccine O A O A May-98, Ind2001d Sea-97 ND ND O/189/87, 3039 A/Sakol/97 A22/Iraq ND ND O A Ind2001d Sea-97 O/189/87, 3039 A/Sakol/97, A22/Iraq Cambodia O A ND ND Myanmar O Mya-98, Ind2001d ND O Asia1 Ind2001d ASIA/Gr.VIII Malaysia Vietnam O A O A Mya-98 Sea-97 Mya-98, Cathay Ind2001d Sea-97 O/3039, O/Manisa A22/Iraq, A/IRN/05 O3039 O/Manisa A22/Iraq China O Mya-98, Cathay O South Korea O A Source: WRLFMD, Pirbright Institute, UK O Ind2001d Ind2001d Ind2001d Sea-97 O/3039 A22/Iraq
9 Phylogenetic tree type O, (Cam, Lao, Myanmar and Thailand Mya-98 SEA Cam O1/Manisa/TUR/69 (AY593823) O/IND/R2/75* (AF204276) O/CAM/4/2015 (*RRL) O/CAM/13/2015 (*RRL) O/CAM/8/2015 (*RRL) O/CAM/9/2016R1 (*RRL) 100 O/CAM/11/2016R1 (*RRL) O/KUW/3/97 (DQ164904) O/OMN/7/2001 (DQ164941) O/UAE/4/2008 (KM921876) O/BHU/3/2009 (KM921814) O/LAO/11/2015 (*RRL) O/LAO/12/2015 (*RRL) 100 O/LAO/15/2015 (*RRL) 72 O/LAO/14/2015 (*RRL) 100 PanAsia Ind-2001a Ind-2001b Ind-2001c 81 O/MYA/19/2017 (*RRL) O/MYA/20/2017 (*RRL) O/MYA/21/2017 (*RRL) O/TAI/11-2/2017 (*RRL) O/TAI/25-2/2017 (*RRL) O/MYA/12/2016 (*RRL) O/MYA/13/2016 (*RRL) 97 O/MYA/11/2017 (*RRL) 98 O/MYA/12/2017 (*RRL) O/MYA/13/2017 (*RRL) O/MYA/10/2017 (*RRL) O/TAI/315/2016 (*RRL) O/TAI/9/2017 (*RRL) O/MYA/6/2017 (*RRL) O/MYA/9/2017 (*RRL) O/MYA/17/2017 (*RRL) O/MYA/8/2017 (*RRL) O/TAI/4/2017 (*RRL) O/TAI/429-1/2016 (*RRL) O/TAI/389/2016 (*RRL) O/TAI/429-2/2016 (*RRL) O/TAI/337-2/2016 (*RRL) O/TAI/310/2016 (*RRL) O/TAI/269-2/2016 (*RRL) O/TAI/435/2016 (*RRL) O/TAI/18/2017 (*RRL) O/TAI/397-1/2016 (*RRL) O/TAI/179/2016 (*RRL) Ind-2001d CATHAY ME-SA 0.02
10 Phylogenetic tree type A, Cam, Lao, Myanmar, Vietnam and Thailand A/LAO/7/2015(*RRL) A/TAI/46-1/2015(*RRL) A/TAI/40-1/2015(*RRL) A/LAO/4/2015(*RRL) A/LAO/5/2015(*RRL) A/TAI/200-1/2015(*RRL) A/TAI/6/2015(*RRL) A/TAI/9/2015(*RRL) A/TAI/12/2015(*RRL) A/TAI/14/2015(*RRL) A/TAI/201/2015(*RRL) A/TAI/211/2015(*RRL) A/MYA/12/2015(*RRL) A/MYA/15/2015(*RRL) A/MYA/3/2015(*RRL) A/CAM/5/2016 (*RRL) A/CAM/10/2016 (*RRL) A/TAI/189/2015(*RRL) A/TAI/5/2016(*RRL) 89 A/TAI/29-1/2016(*RRL) A/TAI/213-1/2015(LPN) A/TAI/30-1/2016(*RRL) A/TAI/21-1/2016(*RRL) A/TAI/61/2016 (*RRL) A/TAI/79-3/2016 (*RRL) A/TAI/72/2016 (*RRL) A/TAI/81/2016 (*RRL) A/TAI/6/2017 (*RRL) A/TAI/291/2016 (*RRL) 79 A/TAI/307/2016 (*RRL) A/TAI/383/2016 (*RRL) A/TAI/2/2017 (*RRL) A/TAI/Lopburi/referencestrain(*RRL) A/TAI/17-1/2017 (*RRL) A/TAI/1-2/2015(*RRL) 73 A/CAM-11/2015 (*RRL) A/CAM-15/2015 (*RRL) A/CAM/6/2015(*RRL) 90 A/CAM/1/2015(*RRL) A/CAM/2/2015(*RRL) A/CAM/7/2015(*RRL) A/CAM/12/2015(*RRL) A/CAM/16/2015(*RRL) A/VIT/9/2015(*RRL) A/VIT/11/2015(*RRL) A/VIT/5/2015(*RRL) A/VIT/2/2015(*RRL) A/VIT/6/2015(*RRL) A/VIT/8/2015(*RRL) A/VIT/4/2015(*RRL) A/VIT/16/2015(*RRL) A/VIT/19/2015(*RRL) A/VIT/20/2015(*RRL) A/VIT/1/2015(*RRL) A/TAI/192/2015(*RRL) A/TAI/1-1/2015(*RRL) A/TAI/308/2016 (*RRL) A/TAI/258-2/2016 (*RRL) A/TAI/19/2017 (*RRL) A/TAI/24/2017 (*RRL) 98 A/TAI/29-2/2017 (*RRL) A/TAI/12/2017 (*RRL) 82 A/TAI/28/2017 (*RRL) A/TAI/10/2017 (*RRL) A/TAI/293/2016 (*RRL) A/TAI/377/2016 (*RRL) A/TAI/312-3/2016 (*RRL) A/TAI/15/2017 (*RRL) A/TAI/427/2016 (*RRL) A/TAI/30/2017 (*RRL) A/TAI/Sakol/referencestrain(*RRL) A/MAY/97(KJ933864) A/TAI/118/87/referencestrain(*RRL) A/TAI/132/referencestrain(*RRL) A/IRAQ/22/64(AY593763) A/IRQ/107/2002(FJ755076) A/SYR/5/2002(FJ755088) A/TUR/25/2008(FJ755136) A/IRN/3/2007(FJ755060) A/JOR/3/2006(FJ755079) A/PAK/1/2006(FJ755082) A/SAU/15/2005(FJ755086) EURO-SA Sea-97 ASIA 0.02
11 Source: WRLFMD, Pirbrigth Institute, UK
12 Source: WRLFMD, Pirbrigth Institute, UK
13 Source: WRLFMD, Pirbrigth Institute, UK
14 WRLFMD, Pirbright Insttute
15 WRLFMD, Pirbright Insttute
16 Type A, 2017 WRLFMD, Pirbright Insttute
17 Outbreak investigation FMDV type Asia1 outbreak in Asia1 virus was detected in Kyaukphyu District, Rakhine state, Myanmar. - The outbreak started on January 15, 2017 and resolved on February 6, out of 1559 cattle showed clinical signs but no death was reported. -Samples were sent to RRL in April 2017 for confirmation by ELISA typing, sequencing and vaccine matching
18 Phylogenetic tree of FMDV Asia1 - Myanmar in Vietnam in Thailand in 18 Asia1/HKN/1/2005(DQ121114) Asia1/HKN/2/2005(DQ121115) Asia1/TAJ/1/2004(DQ121402) Asia1/TAJ/2/2004(DQ121403) Asia1/PAK/1/2004(DQ121128) Asia1/PAK/69/2003(DQ121127) Asia1/PAK/30/2002(DQ121124) Asia1/PAK/31/2002(DQ121125) Asia1/IRN/31/2004(DQ121121) Asia1/IRN/10/2004(DQ121119) Asia1/IND/390/97(AF392940) Asia1/IND/278/(AF392934) Asia1/IND/82/96(AF390705) Asia1/PAK/20/2003(DQ121126) Asia1/IRN/58/(DQ121122) Asia1/TUR/10/(DQ121131) Asia1/GRE/2/2002(DQ121113) Asia1/MYA/2/2001(DQ121123) Asia1/IND/673/2003(DQ101240) Asia1/IND/388/2004 (DQ101235) Asia1/IND/139/02(DQ101242) Asia1/BHU/27/2002(DQ121111) Asia1/IND/165/2004(DQ101238) Asia1/VIT/1/2006 (*RRL) Asia1/VIT/2/2006 (*RRL) Asia1/VIT/3/2006 (*RRL) Asia1/VIT/4/2006 (*RRL) Asia1/MYA/1/2005 (*RRL) Asia1/TAI/1/98 (DQ121129) Asia1/85/TAI/reference strain Asia1/IRN/25/2004(DQ121120) Asia1/AFG/4/2001(DQ121110) Asia1/IND/18/80(DQ121116) Asia1/IND/15/81(DQ121117) Asia1/HeB/China/1/2005(EF187274) 0.02 % Asia1/JiangSu/CHA/2005(DQ156527) Asia1/Beijing/China/2005(EF185303) Asia1/QH/China/2005(EF187272) Asia1/Amursky/RUS/2005(DQ121401) SEA Gr.IV Asia1 from Myanmar, in January 2017 Gr. VIII RRLFMD, Pakchong WRLFMD, Pirbright, UK
19 Summary of Pool 1: Changes in epidemiological patterns in 2016? O/ME-SA/Ind-2001 lineage : rapid spread from the Indian sub-continent through Southeast Asia, first detected in Laos and Vietnam in 2015, and during 2016 cases were detected in Myanmar and Thailand (in June and September, respectively). End of 2016 (November), also detected in the Russia, close to the Chinese border O/CATHAY topotype has been reported for the first time in mainland China. O/SEA/Myamar-98 lineage: normally found in southeast Asia. Continued FMD cases in China, Lao PDR, Malaysia, Republic of Korea, Thailand and Vietnam. O/ME-SA/PanAsia viral lineage: found in Mongolia and Russia A/ASIA/Sea-97 lineage: Outbreaks in China, Mongolia, Thailand, Vietnam and South Korea in February 2017 **New outbreak of Asia1 was found in Myanmar, Jan. 2017, ASIA/Gr.VIII :No Asia-1 detected in the region since 2005 (Myanmar) and 2006 (Vietnam, P.R. China) Source: Report of OIE Ref Lab Network meeting_2016
20 Source: WRLFMD, report OIE Ref Lab Network meeting _2016
21 * Relationship between antigenic and genomic characteristic* Year O/TAI/36/04 O/TAI 37/04 O/TAI 14/05 O/TAI 21/05 O/TAI 54-1/05* (pig) O/TAI 64-1/05 * (pig) O/TAI/269/2016 O/TAI/225/2016 Antigenic characteristic (r value), O/189/ SEA (MYA 98) SEA (MYA 98) SEA (MYA 98) SEA (MYA 98) Cathay (Hkn94) Cathay (Hkn94) ME SA/Ind2001d Genomic characteristic (sequencing)
22 Year Antigenic characteristic (r value), A/Sakol/97 R value A/Lopburi/2012 Genomic characteristic (sequencing) A/TAI/3/2012 < ASIA/Sea97 A/TAI/4/2012 <0/ ASIA/Sea97 A/ 283/ ASIA/Sea97 A/306/ ASIA/Sea97 A/312/ ASIA/Sea97 A/316/ ASIA/Sea97 Source: WRLFMD, Pirbright, UK
23 Thank you for your attention Acknowledgements RRL staff; - Kingkarn Boonsuya Seeyo - Amornrat Shoonnasart - Sahawat Ungvanichaban - Romphruke Udon - Alongkorn Panthumart - Janya Samanit - Sopha Singkleebuth
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