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1 B A Uterus weight (mg) 5 5 Body Weight (g) - - Uterus Weight (mg) - - Supplemental Figure. Effects of prolide and treatment with probiotics on uterus weight and body weight. Data are expressed as ean + SE. All data were normally distributed according to the Shapiro-Wilk normality test and analyzed by two-way analysis-of-variance and post hoc tests applying the Bonferroni correction for multiple compariso A. Effects of prolide on the uterus weight in onv. R, GF and ol. ice. n = mice per group. = p<. compared to the corresponding vehicle group. B. Effects of probiotic supplementation on body weight in sham operated and ovx mice. n=- mice per group. = p<. compared to sham vehicle group.. Effects of probiotic supplementation on uterus weight in sham operated and ovx mice. n=- mice per group = p<. compared to sham vehicle group. In panels B and conventional ovariectomized (ovx) and sham operated mice were supplemented twice a week with x 9 cfu of either T, Lactobacillus rhamnosus GG (), an pili mutant (Δ Spa) referred to as -,, or vehicle.

2 A 5 B 5 B IFNγ (pg/ml) B IL- (pg/ml) SI cells IFNγ mrna Ve h D SI cells IL- mrna Supplemental Figure. Effects of prolide treatment on the generation of osteoclastogenic cytokines by B T cells. A-B. Levels of IFNγ and IL- in the bone marrow (B) of conventionally raised (onv.r), of germ-free (GF), and of colonized GF (ol.gf) mice following either prolide (75 µg/month) or vehicle control treatment for weeks. -D. RT-qPR analysis measuring tracript levels of IFNγ and IL- in the small intestine of mice in experimental groups described in A-B. n = mice per group. Data were normally distributed according to the Shapiro-Wilk normality test and analyzed by two-way analysis-of-variance and post hoc tests applying the Bonferroni correction for multiple compariso. = p <.5, and = p<., compared to the indicated group.

3 B T cells TNF mrna B T cells RANKL mrna B T cells IL-7 mrna Supplemental Figure. Effects of prolide treatment on the generation of osteoclastogenic cytokines by B T cells. RT-qPR analysis measuring tracript levels of TNF, RANKL and IL-7 in purified B T cells. Data are expressed as ean + SE. n = mice per group. Data were normally distributed according to the Shapiro-Wilk normality test and analyzed by two-way analysis-of-variance and post hoc tests applying the Bonferroni correction for multiple compariso. = p <.5, = p<., = p<. and = compared to the indicated group.

4 A D Spine-Tb.Th (µm) a oli oli E 5 5 Femur-Tb.Th (µm) B Spine-Tb.N (/mm) a a a oli oli F Femur-Tb.Sp (µm) Femur Tb.N (/mm) Spine-Tb.Sp (µm) oli oli G Femur t.th (µm) Supplemental Figure. Supplementation of the indigenous microbiota with probiotics prevents the alteratio of bone structure induced by sex-steroid deficiency. onventional ovariectomized (ovx) and sham operated mice were supplemented twice a week with x 9 cfu of either T, Lactobacillus rhamnosus GG (), an pili mutant (Δ Spa) referred to as -,, or vehicle. Data are expressed as ean + SE. All data were normally distributed according to the Shapiro-Wilk normality test and analyzed by ANOVA for repeated measures and post hoc tests applying the Bonferroni correction for multiple compariso. n = to mice per group. A-. In vivo prospective analysis of spinal trabecular thickness (Tb.Th), trabecular space (Tb.Sp), and trabecular number (Tb.N) by µt scanning at baseline and and. a = p <.5, = p<. a= p<. and = p<. compared to baseline. = p <.5, = p<. = p<. and = p<. compared to sham vehicle, = p <.5, = p<. = p<. and = p<. compared to ovx vehicle. D-G. In vitro analysis of femoral indices of trabecular structure (Tb.Th, Tb.N, and Tb.Sp) and cortical structure (t.th) by µt scanning.. = p <.5, = p<., = p<. and = p<. compared to sham vehicle, = p <.5,= p<., = p<. and = p<. compared to ovx vehicle.

5 B T cells TNF mrna - - B T cells RANKL mrna - - B T cells IL-7 mrna - - Supplemental Figure 5. Supplementation of the indigenous microbiota with probiotics modulates the generation of osteoclastogenic cytokines by B T cells following sex-steroid depletion. RT-qPR analysis measuring tracript levels of TNF, RANKL and IL-7 in purified B T cells. n = mice per group in all panels. Data are expressed as ean + SE. All data were normally distributed according to the Shapiro-Wilk normality test and analyzed by two-way analysis-of-variance and post hoc tests applying the Bonferroni correction for multiple compariso. = p<. compared to sham vehicle, = p<. compared to ovx vehicle.

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