Electron Transfer Chain

Transcription

1 Molecular Biochemistry I Electron Transfer Chain Contents of this page: Electron transfer reactions Electron carriers Respiratory chain Electron Transfer is discussed on p , and of Biochemistry, 3rd Edition, by Voet & Voet. A ox + B red A red + B ox A ox is the oxidized form of A (the oxidant in the reaction shown) B red is the reduced form of B (the reductant). For such an electron transfer, one may consider two half-cell reactions: 1. A ox + n e - A red...e.g., Fe e - Fe B ox + n e - B red For each half reaction: E = E ' - RT/nF (ln [reduced]/[oxidized]) e.g., for the first half reaction: E = E ' - RT/nF (ln [A red ]/[A ox ]) E = voltage, R = Gas Constant, F = Faraday Constant, n = number of e - transferred. When [A red ] = [A ox ],.. E = E '. E ' is the mid-point potential, or standard redox potential. It is the potential at which [oxidant] = [reductant] for the half reaction. For an electron transfer: DE ' = E ' (oxidant) - E ' (reductant) = E ' (e - acceptor) - E ' (e - donor) DG o ' = - nfde o ' An electron transfer is spontaneous (negative DG) if E ' (mid-point potential) of the e - donor is more negative than E ' of the e - acceptor, i.e., when there is a positive DE '. 1/12

2 Consider, for example, transfer of 2 electrons from NADH to oxygen: a. O 2 + 2H e - H 2 O E ' = V b. NAD + + 2H e - NADH + H + E ' = V Subtracting reaction b from reaction a: O 2 + NADH + H + H 2 O + NAD + DE ' = V DG o ' = - nfde o ' = - 2(96485 Joules/Volt mol)(1.13 V) = kj/mol Electron carriers: NAD + /NADH and FAD/FADH 2 were introduced in the class on bioenergetics. FMN (Flavin MonoNucleotide) is a prosthetic group of some flavoproteins. It is similar in structure to FAD (Flavin Adenine Dinucleotide), but lacking the adenine nucleotide. FMN (like FAD) can accept 2 e H + to yield FMNH 2. When bound at the active site of some enzymes, FMN can accept 1 e -, converting it to the half-reduced semiquinone radical. The semiquinone can accept a second e - to yield FMNH 2. Role of FMN: Since it can accept/donate either 1 or 2 e -, FMN has an important role in mediating electron transfer between carriers that transfer 2 e - (e.g., NADH) and carriers that can only accept 1 e - (e.g., Fe +++ ). See discussion of complex I below. Coenzyme Q (also called CoQ, Q or ubiquinone) is very hydrophobic. It dissolves in the hydrocarbon core of a membrane. 2/12

3 The structure of CoQ includes a long isoprenoid tail, with multiple units having a carbon skeleton comparable to that of the compound isoprene. In human cells, most often the number of isoprene units (n) is 10. The isoprenoid tail of Q 10 is longer than the width of a lipid bilayer. The isoprenoid moiety of CoQ may be folded to yield a more compact structure, and is postulated to reside in the central hydrophobic domain of a membrane, between the two lipid monolayers. The quinone ring of coenzyme Q can be reduced to a quinol in a 2e - reaction: Q + 2e - + 2H + QH 2 When bound to special sites in respiratory chain complexes, CoQ can accept a single electron to form a semiquinone radical (Q - ). Thus CoQ, like FMN, can mediate between one-electron and twoelectron donors/acceptors. Coenzyme Q functions as a mobile electron carrier within the mitochondrial inner membrane. Its role in transmembrane H + transport coupled to electron transfer (the Q Cycle) will be discussed in the section on oxidative phosphorylation. Heme is a prosthetic group of cytochromes. Heme contains an iron atom embedded in a porphyrin ring system, shown at right & below. The Fe is bonded to 4 N atoms of the porphyrin ring. Hemes in the three classes of cytochrome (a, b, c) differ slightly in substituents on the porphyrin ring system (see p. 813). A common feature is two propionate side-chains. 3/12

4 Only heme c is covalently linked to the protein via thioether bonds to cysteine residues, as shown at right. Heme a is unique in having a long farnesyl sidechain that includes three isoprenoid units. Synthesis of heme is discussed separately. In the RasMol display of heme c at right, the porphyrin ring is displayed as ball & stick, while the iron is shown as spacefill. Iron is colored gold and nitrogen blue. The heme iron atom can undergo a 1 e - transition between ferric and ferrous states: Fe e - Fe /12

5 The porphyrin ring structure is planar. The iron atom of heme is usually bonded to two axial ligands, above and below the heme plane (X & Y in the diagram at right), in addition to the 4 N of the porphyrin ring system. Axial ligands may be sulfur or nitrogen atoms of amino acid side-chains of the protein. Axial ligands in cytochrome c are a methionine S (yellow) and a histidine N (blue), as shown at right. A heme that binds O 2 may have an open (empty) axial ligand position. Cytochromes are proteins with heme prosthetic groups. They absorb light at characteristic wavelengths. Changes in light absorbance upon oxidation or reduction of the heme iron provide a basis for monitoring the redox state of the heme. Some cytochromes are part of large integral membrane complexes, each consisting of several polypeptides and including multiple electron carriers. Individual heme prosthetic groups may be separately designated as cytochromes, even if associated with the same protein. For example, hemes a and a 3 that are part of the respiratory chain complex IV are often referred to as cytochromes a and a 3. Cytochrome c is instead a small, water-soluble protein, with a single heme group. Positively charged lysine residues surround the heme crevice on the surface of cytochrome c. These may interact with anionic residues on membrane complexes to which cytochrome c binds, when it is receiving or donating an electron (diagram below). In the image at right, Lys residues are colored magenta; all atoms are displayed as spacefill except for the porphyrin ring of heme which is in ball and stick display. 5/12

6 Explore the structure of cytochrome c at right. Cytochrome c Iron-sulfur centers (Fe-S) are prosthetic groups containing 2, 3, 4, or 8 iron atoms, complexed to a combination of elemental and cysteine sulfur atoms. 4-Fe centers have a tetrahedral structure, with Fe and S atoms alternating as vertices of a cube, as depicted at right. See also diagrams p. 808 & 809. The cysteine residues provide sulfur ligands to the iron, while also holding these prosthetic groups in place within the protein. Electron transfer proteins may contain multiple iron-sulfur centers. Iron-sulfur centers transfer only one electron even if they contain two or more iron atoms, because of the close proximity of the iron atoms. For example a 4-Fe center might cycle between the redox states: Fe +++ 3, Fe++ 1 (oxidized) + 1 e- Fe +++ 2, Fe++ 2 ( reduced) Iron-sulfur centers in spacefill display; cysteines in ball & stick display. Iron is red-orange; sulfur is yellow. Data from PDB file 2FUG. Respiratory chain 6/12

7 Most constituents of the respiratory chain are embedded in the inner mitochondrial membrane (or in the cytoplasmic membrane of aerobic bacteria). The inner mitochondrial membrane has infoldings called cristae that increase the membrane area. Electrons are transferred from NADH to O 2 via multisubunit inner membrane complexes I, III, & IV, plus coenzyme Q and cytochrome c. Within each complex, electrons pass sequentially through a series of electron carriers. Coenzyme Q is located within the lipid core of the inner membrane. There are also binding sites for coenzyme Q within protein complexes with which it interacts. Cytochrome c resides in the intermembrane space (within the lumen of the cristae). It alternately binds to Complex III or Complex IV during electron transfer. Individual respiratory chain complexes have been isolated and their composition determined. There is also evidence for the existence of stable supramolecular aggregates containing multiple complexes. E.g., complex I, which transfers electrons to coenzyme Q, may associate with complex III, which reoxidizes the reduced coenzyme Q, to provide a pathway for direct transfer of coenzyme Q between them. The composition of each of the respiratory chain complexes is shown below and in Table 22-1 p Complex Name No. of Proteins Prosthetic Groups Complex I NADH Dehydrogenase 46 FMN, 9 Fe-S centers Complex II Succinate-CoQ Reductase 5 FAD, cyt b 560, 3 Fe-S centers Complex III CoQ-cyt c Reductase 11 cyt b H, cyt b L, cyt c 1, Fe-S Rieske Complex IV Cytochrome Oxidase 13 cyt a, cyt a 3, Cu A, Cu B The approximate mid-point potentials of constituent electron carriers is represented in the diagram on p. 803 and in table 22-1 on p The mid-point potentials are consistent with the electron transfers shown above 7/12

8 being spontaneous. Respiratory chain inhibitors include the following: Rotenone (a common rat poison) blocks electron transfer in complex I. Antimycin A blocks electron transfer in complex III. Cyanide and carbon monoxide inhibit complex IV. Inhibition at any of these sites will block electron transfer from NADH to oxygen. Complex I catalyzes oxidation of NADH, with reduction of coenzyme Q: NADH + H + + Q NAD + + QH 2 Transmembrane H + flux associated with this reaction is discussed in the section on oxidative phosphorylation. An atomic-level structure is not yet available for the entirecomplex I, which in mammals includes at least 46 proteins, along with prosthetic groups FMN and several ironsulfur centers. Complex I is L-shaped. For a low-resolution structure determined by electron microscopy see diagram in the textbook p The peripheral domain of the complex, containing the FMN that accepts 2 electrons from NADH, protrudes into the mitochondrial matrix. Iron-sulfur centers are also located in the hydrophilic peripheral domain, where they form a pathway for electron transfer from FMN to coenzyme Q. A binding site for coenzyme Q is thought be close to the interface between peripheral and intra-membrane domains. The initial electron transfers are: NADH + H + + FMN NAD + + FMNH 2 FMNH 2 + (Fe-S) ox FMNH + (Fe-S) red + H + After Fe-S is reoxidized by transfer of the electron to the next iron-sulfur center in the pathway: FMNH + (Fe-S) ox FMN + (Fe-S) red + H + Electrons pass through a series of iron-sulfur centers, and are eventually transferred to coenzyme Q. Coenzyme Q accepts 2 e - and picks up 2 H + to yield the fully reduced QH 2. An X-ray structure has been determined for the hydrophilic peripheral domain of a bacterial complex I. This bacterial complex I contains fewer proteins than the mammalian complex I, but includes the central subunits found in all prokaryotic and eukaryotic versions of complex I. 8/12

9 The prosthetic groups are found to be all in the peripheral domain, that in mammalian complex I would protrude into the mitochondrial matrix. Iron-sulfur centers are arranged as the a wire, providing a pathway for electron transfer from FMN through the protein. The last iron-sulfur center in the chain, designated N2, passes electrons one at a time to the mobile lipid redox carrier coenzyme Q. A proposed binding site for coenzyme Q is close to N2 at the interface of peripheral & membrane domains. P. L. Dutton and coworkers have called attention to the relevance of conserved distances between redox carriers within respiratory chain complexes with regard to the energy barrier at each step for electron tunneling through the protein. They have modeled electron transfers through the respiratory chain complexes, and provide an animation of the time course of electron transfer through Complex I. (For details see the article by Moser et al., also included in the reference list.) For more diagrams and additional information see: A review by U. Brandt (requires Annual Reviews subscription.) The Complex I Home Page Succinate Dehydrogenase of the Krebs Cycle is also called complex II or Succinate-CoQ Reductase. FAD is the initial electron acceptor. FAD is reduced to FADH 2 during oxidation of succinate to fumarate. FADH 2 is then reoxidized by transfer of electrons through a series of three iron-sulfur centers to Coenzyme Q, yielding QH 2. The QH 2 product may then be reoxidized via complex III, providing a pathway for transfer of electrons from succinate into the respiratory chain. Peripheral domain of complex I from T. thermophilus. A. Protein in cartoon display; FMN & FeS centers spacefill. B. Same but with protein hidden. Structure published by Sazanov & Hinchcliffe in X-ray crystallographic analysis of E. coli complex II indicates a linear arrangement of electron carriers within complex II, consistent with the 9/12

10 predicted sequence of electron transfers: FAD FeS center 1 FeS center 2 FeS center 3 CoQ In the crystal structure at right, oxaloacetate (colored black) is bound at the active site in place of succinate. See also diagram p Complex III accepts electrons from coenzyme QH 2 that is generated by electron transfer in complexes I and II. The structure and roles of complex III are discussed in the section on oxidative phosphorylation. Cytochrome c 1, a prosthetic group within complex III, reduces cytochrome c, which is the electron donor to complex IV. Cytochrome oxidase (complex IV) carries out the following irreversible reaction: O H e - 2 H 2 O The four electrons are transferred into the complex one at a time from cytochrome c. Intramembrane domains of cytochrome oxidase (complex IV) consist mainly of transmembrane a- helices. Metal centers of cytochrome oxidase (complex IV) include heme a, heme a 3, Cu A (consisting of 2 adjacent Cu atoms) and Cu B. O 2 reacts at a binuclear center, consisting of heme a 3 and Cu B. In the diagram at right, the iron atom of heme a 3 in gold, and copper atom in dark red, are displayed as spacefill, with the heme displayed as sticks. Metal center ligands: Axial ligands of the hemes in complex IV are histidine N atoms. Note at right how heme a is held in place within the complex, between 2 transmembrane a- helices, by its axial histidine ligands. 10/12

11 Heme a 3, which sits adjacent to Cu B, has only one such axial ligand (diagram below right). Ligands of Cu atoms consist of histidine N, and in the case Cu A also cysteine S, a methionine S, and a glutamate backbone O. Electrons enter complex IV one at a time by transfer from cytochrome c to Cu A. They then pass via heme a to the binuclear center consisting of heme a 3 and Cu B, where the chemical reaction takes place. Order of e - transfers: cyt c Cu A heme a heme a 3 /Cu B O 2 binds at the open axial ligand position of heme a 3, adjacent to Cu B. A possible reaction sequence is depicted on p Details of the reaction are still debated. A tyrosine-histidine complex adjacent to the binuclear center is postulated to have a role in O-O bond splitting. Diagram p Proton pumping linked to electron transfer in complex IV will be discussed separately. The open axial ligand position of the iron atom in heme a 3 makes it susceptible to binding each of the following inhibitors: CN -, CO, and the radical signal molecule NO (nitric oxide). NO may regulate cellular respiration through its inhibitory effect, and can induce a condition comparable to hypoxia. Explore at right the structure of cytochrome oxidase (complex IV). Cytochrome Oxidase Copyright by Joyce J. Diwan. All rights reserved. 11/12

12 Additional material on Electron Transfer Chain: Readings, Test Questions & Tutorial 12/12