Circular RNA_LARP4 inhibits cell proliferation and invasion of gastric cancer by sponging mir-424-5p and regulating LATS1 expression

Size: px
Start display at page:

Download "Circular RNA_LARP4 inhibits cell proliferation and invasion of gastric cancer by sponging mir-424-5p and regulating LATS1 expression"

Transcription

1 Zhang et al. Molecular Cancer (2017) 16:151 DOI /s RESEARCH Open Access Circular RNA_LARP4 inhibits cell proliferation and invasion of gastric cancer by sponging mir-424-5p and regulating LATS1 expression Jing Zhang 1, Hui Liu 1, Lidan Hou 2, Ge Wang 1, Rui Zhang 1, Yanxia Huang 1, Xiaoyu Chen 1 and Jinshui Zhu 1* Abstract Background: Non-coding RNAs (ncrnas) have been shown to regulate gene expression involved in tumor progression of multiple malignancies. Our previous studies indicated that large tumor suppressor kinase 1 (LATS1), a core part of Hippo signaling pathway, functions as a tumor suppressor in gastric cancer (GC). But, the underlying molecular mechanisms by which ncrnas modulate LATS1 expression in GC remain undetermined. Methods: The correlation of LATS1 and has-mir-424-5p (mir-424) expression with clinicopathological characteristics and prognosis of GC patients was analyzed by TCGA RNA-sequencing data. A novel circular RNA_LARP4 (circlarp4) was identified to sponge mir-424 by circrna expression profile and bioinformatic analysis. The binding site between mir-424 and LATS1 or circlarp4 was verified using dual luciferase assay and RNA immunoprecipitation (RIP) assay. The expression and localization of circlarp4 in GC tissues were investigated by fluorescence in situ hybridization (FISH). MTT, colony formation, Transwell and EdU assays were performed to assess the effects of mir-424 or circlarp4 on cell proliferation and invasion. Results: Increased mir-424 expression or decreased LATS1 expression was associated with pathological stage and unfavorable prognosis of GC patients. Ectopic expression of mir-424 promoted proliferation and invasion of GC cells by targeting LATS1 gene. Furthermore, circlarp4 was mainly localized in the cytoplasm and inhibited biological behaviors of GC cells by sponging mir-424. The expression of circlarp4 was downregulated in GC tissues and represented an independent prognostic factor for overall survival of GC patients. Conclusion: circlarp4 may act as a novel tumor suppressive factor and a potential biomarker in GC. Keywords: Circular RNA_LARP4, mir-424-5p, LATS1, Invasion, Gastric cancer Background Gastric cancer (GC) is the fourth common gastrointestinal malignancy and the third leading cause of cancerrelated deaths worldwide [1]. Despite a steady decline in GC incidence and mortality rates in recent years due to improved nutritional compositions and H. pylori eradication [1], this disease still yields a great threat to human health, leading to a poor prognosis for GC patients, with * Correspondence: zhujs1803@163.com Equal contributors 1 Department of Gastroenterology, Shanghai Jiao Tong University Affiliated Sixth People s Hospital, No. 600 Yishan Road, Shanghai , China Full list of author information is available at the end of the article a 5-year overall survival (OS) rate of less than 30% duo to tumor metastasis and recurrence [2]. Therefore, to discover novel molecular mechanisms and critical signaling pathways, activated or inactivated in GC, is required for developing effective therapeutic strategies for anticancer therapy in GC. Hippo signaling pathway was previously known to control organ size and growth, and accumulating evidence shows that this pathway acts a pivotal role in the regulation of cell proliferation, metastasis and oncogenesis [3 6]. Large tumor suppressor kinase 1 (LATS1) as a core member of this pathway dominates breast cell fate [7] and modulates liver progenitor cell proliferation and The Author(s) Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( applies to the data made available in this article, unless otherwise stated.

2 Zhang et al. Molecular Cancer (2017) 16:151 Page 2 of 16 differentiation [8, 9]. Decreased LATS1 expression is associated with unfavorable prognosis and contributes to glioma progression [10]. Our previous study showed that loss of LATS1 is correlated with poor survival and recurrence and promotes growth and metastasis of GC cells [11]. But, LATS1/2 is proved to inhibit tumor immunity and provides a concept for targeting LATS1/2 in cancer immunotherapy [12]. Considerable studies highlight the regulatory mechanisms by which non-coding RNAs (ncrnas) participate in the development of diseases including cancer [13]. micrornas (mirnas), an evolutionarily conserved group of small regulatory ncrnas, negatively modulate the expression of protein-coding genes [14]. Moreover, some mirnas are implicated in carcinogenesis by regulating Hippo signaling. For example, mir-130a-yap positive feedback loop facilitates organ size and tumorigenesis [15], while mir-129 suppresses ovarian cancer survival via repression of Hippo signaling effectors YAP and TAZ [16]. mir-135b, mir-31 and mir-181c function as oncogenes boosting tumor metastasis and chemo-resistance by targeting Hippo signaling members MST1, LATS2, MOB1 and SAV1 [17 19], thereby providing a novel mechanism for Hippo signaling inactivation in cancer. Circular RNAs (circrnas) as a novel type of ncrnas derived from exons, introns or intergenic regions have a covalently closed continuous loop, display cell or tissuespecific expression and are conserved across species due to resistance to RNase R [20, 21], The expression of circrnas is highly stable in comparison with their linear counterparts, and is predominantly localized in the cytoplasm, indicating important functions for circrnas in human diseases [22, 23]. Emerging evidence shows that some circrnas as mirna sponges modulate gene transcription and interact with RNA binding proteins (RBPs) involved in tumorigenesis [20, 21]. cirs-7 serves as mir- 7 sponge regulating the expression of several oncogenes [24], and circhipk3 as mir-124 sponge suppresses cell proliferation in multiple caners [25]. circrna expression profiles reveal a tumor-promoting role of TCF25-miR- 103a-3p/miR-107 axis in bladder cancer [26] and circrna_001569/mir-145 axis in colorectal cancer [27], providing novel promising markers for cancer diagnosis and therapy. In the present study, we identified an oncogenic mir- 424, which was upregulated in GC tissues and was negatively correlated with LATS1 expression. High expression of mir-424 or low expression of LATS1 was closely associated with pathological staging, poor survival and recurrence of GC patients, and mir-424 overexpression promoted cell growth and invasion by targeting LATS1 gene. Furthermore, we characterized a circrna derived from LARP4 gene locus, termed as circlarp4, which was downregulated in GC tissues, and suppressed cell proliferation and invasion by sponging mir-424 and upregulating LATS1 gene. Therefore, circlarp4 might act as a tumor suppressive factor and an independent prognostic factor for survival of GC patients. Methods Clinical data The clinical and pathological data of 387 cases of GC patients and 41 adjacent normal tissues as well as the relative expression levels of LATS1 and mirnas (hasmir-16-5p, has-mir-15a-5p, has-mir-15b-5p, has-mir p and has-mir-424-5p) were downloaded from The Cancer Genome Atlas 2015 RNA sequencing database ( The human tissue microarray of 80 paired GC patients (Cat No. STC1602) was purchased from the shanghai Superbiotek Pharmaceutical Technology Co., Ltd. (Shanghai, PR, China). The protocols used in our study were approved by the Ethics Committee of Shanghai Jiao Tong University Affiliated Sixth People s Hospital. The GC patients specimens were classified according to the 2004 WHO criteria and TNM staging system, and clinicopathological characteristics of GC patients from TCGA and tissue microarray were shown in Additional file 1: Table S1 2. Identification of mirnas targeting LATS1 gene in cancer tissues We identified the mirnas that target LATS1 gene in cancer by using the StarBase v2.0 ( and the strict screening conditions including two prediction algorithms (Pctar and miranda), very high stringency (>5) and being expressed in at least three cancer types were limited to predict the mirnas targeting LATS1 gene. Cell culture Normal human gastric epithelial cell line GES-1 and GC cell lines (SGC-7901, MKN-45, MKN-28, HGC-27, MGC- 803, AGS, BGC-823) were from Digestive Disease Laboratory of Shanghai Sixth People s Hospital. Cells were cultured in Dulbecco s Modified Eagle medium (DMEM) medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 100 U/ml of penicillin, and 100 μg/ml of streptomycin (HyClone). Cells in this medium were placed in a humidified atmosphere containing 5% CO 2 at 37 C. All cells were used for study within 6 months. Quantitative real-time PCR (qrt-pcr) Total RNA was extracted using TRIzol and reverse transcription was performed using M-MLV and cdna amplification using the SYBR Green Master Mix kit (Takara, Otsu, Japan). In addition, total RNA was isolated using a High Pure mirna isolation kit (Roche) and RT-PCR using a TaqMan MicroRNA Reverse Transcription kit

3 Zhang et al. Molecular Cancer (2017) 16:151 Page 3 of 16 (Life Technologies). The nuclear and cytoplasmic fractions were isolated using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Scientific). The primers were listed in Additional file 1: Table S3. Western blotting analysis HGC-27 and MKN-28 cells were harvested and extracted using lysis buffer (100 mm Tris-HCl, 2% SDS, 1 mm Mercaptoethanol, 25% Glycerol). Cell extracts were boiled in loading buffer and equal amount of cell extracts were separated on 15% SDS-PAGE gels. Separated protein bands were transferred into polyvinylidene fluoride (PVDF) membranes. The primary antibodies-anti-lats1 (ab70561, Rabbit polyclonal antibody, Abcam, Cambridge, MA, USA), anti-yap (ab52771, Rabbit monoclonal antibody, Abcam, Cambridge, MA, USA), anti-p-yap (S127) (ab76252, Rabbit monoclonal antibody, Abcam, Cambridge, MA, USA) and anti-gapdh (ab153802, Rabbit polyclonal antibody, Abcam, Cambridge, MA, USA) were diluted at a ratio of 1:1000 according to the instructions and incubated overnight at 4 C. Horseradish peroxidase-linked secondary antibodies were added at a dilution ratio of 1:10,000, and incubated at room temperature for 1 h. The membranes were washed with PBS for three times and the immunoreactive bands were visualized using ECL-PLUS/Kit (GE Healthcare, Piscataway, NJ, USA) according to the kit sinstruction. Luciferase reporter assay HGC-27 and MKN-28 cells were seeded into 96-well plates and were co-transfected with a mixture of 60 ng of firefly luciferase reporter, 6 ng of prl-cmv Renilla luciferase reporter, and mir-424 mimic or inhibitor. After 48 h of incubation, the firefly and Renilla luciferase activities were measured with a dual-luciferase reporter assay (Promega, Madison, WI, USA). Plasmid, sirnas and mirna mimic and inhibitor Plasmid mediated LATS1 or circlarp4 overexpression vector, sirna targeting LATS1 or circlarp4 vector, mir-424 mimic and inhibitor were purchased from Genechem (Shanghai, PR, China) and an empty vector used as a control. The sirna sequences were shown as below, si-lats1: ATCCTCGACGAGAGCAGA and sicirclarp4: GGGCAGGCTCCCTTTCCCAAT. HGC-27 and MKN-28 cells were planted in 6-well plates 24 h prior to si-lats1, si-circlarp4, mir-424 mimic or inhibitor transfection with 50 60% confluence, and then were transfected with Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacture instructions. Cell viability and transwell invasion assays Cell viability and Transwell assays were performed as previously described [11]. Colony formation assay HGC-27 and MKN-28 cells were trypsinized, and cells were plated in 6-well plates and incubated at 37 C for 7 days. Colonies were dyed with dyeing solution containing 0.1% crystal violet and 20% methanol. Cell colonies were then counted and analyzed. circrna microarray analysis Total RNA from three GC and adjacent normal tissues was quantified using the NanoDrop ND The sample preparation and microarray hybridization were performed based on the Arraystar s standard protocols. Briefly, total RNAs were digested with RNase R to eliminate linear RNAs and enrich circular RNAs. Then, the enriched circular RNAs were amplified and transcribed into fluorescent crna utilizing a random priming method (Arraystar Super RNA Labeling Kit; Arraystar). The labeled crnas were hybridized onto the Arraystar Human circrna Array (8x15K, Arraystar). After having washed the slides, the arrays were scanned by the Agilent Scanner G2505C. Actinomycin D and RNase R treatment Transcription was prevented by the addition of 2 mg/ml Actinomycin D or DMSO (Sigma-Aldrich, St. Louis, MO, USA) as the negative control. Total RNA (2 μg) was incubated for 30 min at 37 Cwith 3 U/μg of RNase R (Epicentre Technologies, Madison, WI, USA). After treatment with Actinomycin D and RNase R, the RNA expression levels of LARP4 and circlarp4 were detected by qrt-pcr. 5-Ethynyl-20-deoxyuridine (EdU) incorporation assay The EdU assay was carried out with a Cell-Light EdU DNA Cell Proliferation Kit (RiboBio, Shanghai, PR, China) cells were seeded in 96-well plate. After incubation with 50 mm EdU for 2 h, the cells were fixed in 4% paraformaldehyde and stained with Apollo Dye Solution. Hoechst-33,342 was used to stain the nucleic acid within the cells. Images were acquired with an Olympus FSX100 microscope (Olympus, Tokyo, Japan), and the percentage of EdU-positive cells was calculated. RNA immunoprecipitation (RIP) RIP assay was carried out by using a Magna RIP RNA- Binding Protein Immunoprecipitation Kit (Millipore) according to the manufacturer s instructions. Antibodies for RIP assays against AGO2 and IgG were purchased from Abcam (ab5072, Rabbit polyclonal antibody, Cambridge, MA, USA). RNA fluorescence in situ hybridization (FISH) Oligonucleotide modified probe sequence for human circlarp4 (CCATTGGGAAAGGGAGCCTGCCCTACCA

4 Zhang et al. Molecular Cancer (2017) 16:151 Page 4 of 16 TAGTCC) was applied for FISH. First, the probe of circlarp4 was marked with DIG-UTP (Roche, 11,209,256,910) for RNA labeling. The cell suspension was pipetted onto autoclaved glass slides, which were washed with PBS and fixed in 4% paraformaldehyde. After dehydration with 70, 95 and 100% ethanol, hybridization was carried out at 37 C overnight in a dark moist chamber. After hybridization, slides were washed three times in 50% 60 ml formamide/2x SSC for 5 min, and was incubated with anti-dig-hrp(perkinelmer, NEF832001EA)at 4 C overnight, After being washed for 3 times for 10 min at room temperature, the slides were incubated with TSA fluorescent signal reaction solution(perkinelmer, NEL KT, TSA Fluorescein system)for 30 min and was sealed with tablets containing DAPI. The images were acquired using a fluorescence microscopy (Leica, SP8 laser confocal microscopy). The analysis software Image-pro plus 6.0 (Media Cybernetics, Inc., Rockville, MD, USA) was applied to acquire the Immunofluorescence Accumulation Optical Density (IOD) for evaluating the expression level of circlarp4 in GC tissues. Statistical analysis Statistical analyses were carried out by using SPSS 20.0 (IBM, SPSS, Chicago, IL, USA) and GraphPad Prism. Student s t-test or Chi-square test was used to assess the statistical significance for comparisons of two groups. The Pearson s correlation coefficient analysis was used to analyze the correlations. Overall survival (OS) was defined as the interval between the dates of surgery and death and OS and disease-free survival (DFS or recurrence) curves were analyzed with the Kaplane-Meier method and log-rank test. Univariate analysis and multivariate models were performed by using a Cox proportional hazards regression model. Receiver operating characteristic (ROC) curves were obtained using cutoff finder online software ( de/cutoff/ load.jsp). P < 0.05 was considered statistically significant. Results MiR-424-5p was negatively correlated with LATS1 expression in GC Our previous studies showed that LATS1 is downregulated in GC compared with the pair-matched normal tissues [11]. We further validated a decreased expression of LAST1 in human gastric adenocarcinoma (GAC) tissues (n = 387) and adjacent normal tissues (n = 41) as well as in paired GAC tissues (n = 41) by using The Cancer Genome Atlas (TCGA) sequencing data (Fig. 1a). To dissect the molecular mechanism of LATS1 downregulation in GC, we first assessed the genetic or epigenetic dysregulation of LATS1 in GC. But, we discovered little evidence regarding the dysregulation of LATS1 at the genetic (Additional file 2: Figure S1a and b) and methylation levels (Additional file 2: Figure S1c), suggesting that genetic alterations (amplification, deletion, mutation and copy number deletion) and methylation modification were not the main cause of the downregulation of LATS1 in GC. Numerous studies show that mirnas exhibit a pivotal role in GC development by Fig. 1 MiR-424-5p was negatively correlated with LATS1 expression in GC. a TCGA RNA sequencing database analysis of the relatively differential expression level of LATS1 in human GC and pair-matched normal tissues. b Bioinformatic software identification of the mirnas which target LATS1 gene in human cancer tissues. c1 5 TCGA analysis of the relatively differential expression levels of mir-16-5p, mir-15a-5p, mir-15b-5p, mir-590-3p and mir-424-5p between human GC and pair-matched normal tissues. d Pearson correlation analysis of the correlation of mir-16-5p, mir-15a-5p, mir-590-3p or mir-424-5p with LATS1 expression in human GC tissues

5 Zhang et al. Molecular Cancer (2017) 16:151 Page 5 of 16 repressing the expression of their target genes [14], indicating that LATS1 might be regulated by mirnas in GC. Then, we utilized the StarBase v2.0, Pictar and mi- Randa software to forecast the potential mirnas that target LATS1 gene 3 UTR, and identified 5 mirnas that could bind to LATS1 gene 3 UTR with very high stringency (Fig. 1b). Furthermore, we investigated the expression levels of these mirnas in GAC, which were highly expressed in GAC (n = 387) compared with adjacent normal tissues (n = 41) as well as in paired GAC (n = 41) (Fig. 1c1 5). The correlation analysis showed that, except for the has-mir-15b-5p (Additional file 2: Figure S1d), the other mirnas displayed the negative correlation with LATS1 expression, of which mir-424-5p (mir-424) had the strongest correlation with LATS1 expression (r = , P < ) and was selected for further observation. MiR-424 and LATS1 expression were associated with clinicopathological characteristics and prognosis of GC patients To evaluate whether the expression levels of LATS1 and mir-424 were associated with clinical and pathological characteristics and prognosis of GC patients, as shown in Fig. 2a, based on the cutoff values of LATS1 and mir- 424, which were obtained according to their expression levels, OS time and OS status in GAC tissues, the 315 GAC patients were divided into two groups: LATS1 high expression and LATS1 low expression or mir-424 high expression and mir-424 low expression. Receiver operating characteristic (ROC) curve and area under curve (AUC) were determined to assess the sensitivity and specificity of the survival prediction. The sensitivity, specificity and AUC of LATS1 were 37.1%, 75.7% and 0.54 and those of mir-424 were 25.7%, 90.2% and 0.52, indicating that LATS1 and mir-424 might be the potential biomarkers for OS of GAC patients. As indicated in Additional file 1: Table S4, LATS1 low expression or mir-424 high expression was positively correlated with pathological stage (P = 0.004; P = 0.036), but harbored no association with other clinical parameters (P > 0.05). Kaplan Meier analysis illustrated that GAC patients with LATS1 low expression or mir-424 high expression developed more frequent recurrence (Fig. 2b and c), but had no significant difference in OS compared with the patients with LATS1 high expression or mir-424 low expression (Additional file 3: Figure S2a and b). According to the pathological stage, the patients of early stage (stage I + II) or late stage (stage III + IV) with mir-424 high expression possessed the higher recurrence rate compared with those with mir-424 low expression (Fig. 2d), but the patients of early stage (stage I + II) or late stage (stage III + IV) with LATS1 low expression had no obvious difference in tumor recurrence compared with those with LATS1 high expression (Additional file 3: Figure S2c). To define whether LATS1 or mir-424 expression was independent of other risk factors related to the recurrence of GAC, multivariate analyses were performed by using a Cox proportional hazard model. As shown in Additional file 1: Table S5, 6, in the univariate analysis, gender, LATS1 low expression and mir-424 expression were associated with recurrence of GC patients, but in the final multivariate Cox regression model, it was mir-424 not LATS1 expression that represented an independent prognostic factor for recurrence of GAC. Furthermore, by using the online bioinformatics tool Kaplan-Meier plotter [28], we found that GC patients with LATS1 low expression developed poorer survival (Fig. 2e) and more frequent recurrence (Fig. 2g). In addition, the patients of stage I or stage III with LATS1 low expression had poorer survival (Fig. 2f) and those of stage I or stage IV harbored higher recurrence (Fig. 2h) compared with those with LATS1 high expression, but the patients with LATS1 low expression had no significant difference in OS for stage II or stage IV (Additional file 3: Figure S2d) and in recurrence for stage II or stage III (Additional file 3: Figure S2e) compared with those with LATS1 high expression. LATS1 Was validated as a target gene of mir-424 Having confirmed the negative correlation of mir-424 with LATS1 expression in GC tissues, we were curious about whether LATS1 was a target gene of mir-424 in GC cells. We first utilized the mirpath v.3 software to verify whether mir-424 was related with LATS1 signaling pathway. Consequently, KEGG enrichment analysis demonstrated that mir-424 was principally enriched by Hippo signaling pathway in which LATS1 was a nuclear member (Fig. 3a). Then, we examined the expression levels of mir-424 and LATS1 in GC cell lines by qrt- PCR, which demonstrated that LATS1 had lower expression, while mir-424 exhibited higher expression and negative correlation with LATS1 expression in all GC cell lines compared with the GES-1, of which MKN-28 cell line had the relatively higher mir-424 expression level but HGC-27 cell line had the relatively lower mir- 424 expression level (Fig. 3b). Thus, mir-424 mimic (60 μm) and mir-424 inhibitor (80 μm) were respectively transfected into HGC-27 cells with mir-424 low expression and MKN-28 cells with mir-424 high expression. After transfection for 48 h, qrt-pcr and western blot analysis displayed substantially increased expression of mir-424 and decreased expression of LATS1 in mir- 424 mimic group in HGC-27 cells (Fig. 3c), and indicated noticeably decreased expression of mir-424 and increased expression of LATS1 in mir-424 inhibitor group in MKN-28 cells (Fig. 3d). Luciferase reporter

6 Zhang et al. Molecular Cancer (2017) 16:151 Page 6 of 16 Fig. 2 Correlation of LATS1 and mir-424 expression with clinicopathological characteristics and prognosis of GC patients. a Receiver operating characteristic (ROC) curve analysis of the cutoff value, sensitivity, specificity and AUC of LATS1 and mir-424 in GC patients. b and c Kaplan Meier analysis of the correlation of LATS1 and mir-424 expression levels with the recurrence of GC patients. d Kaplan Meier analysis of the correlation of mir-424 expression level with the recurrence of GC patients with early stage (stage I + II) and late stage (stage III + IV). Online bioinformatics tool Kaplan-Meier plotter analysis of the correlation of LATS1 expression level with e overall survival (OS) and g recurrence of GC patients. f Kaplan-Meier plotter analysis of the correlation of LATS1 expression level with OS of GC patients with stage I and stage III. h Kaplan-Meier plotter analysis of the correlation of LATS1 expression level with recurrence of GC patients with stage I and stage IV

7 Zhang et al. Molecular Cancer (2017) 16:151 Page 7 of 16 Fig. 3 Validation of LATS1 as a target gene of mir-424 in GC cells. a KEGG enrichment analysis of the association of mir-424 expression with enriched signaling pathways by using mirpath v.3 software. b Relative expression levels of mir-424 and LATS1 in different GC cell lines and GES-1 cells and spearman correlation analysis of their correlation in GC cells. c and d qrt-pcr and western blot analysis of the expression levels of mir- 424 and LATS1 after transfection with mir-424 mimic or inhibitor in HGC-27 or MKN28 cell lines. e The binding sites of wild type or mutant LATS1 3 UTR with mir-424. f and g The luciferase activity of wild type LATS1 3 UTR or mutant LATS1 3 UTR after transfection with mir-424 mimic or inhibitor in HGC-27 or MKN28 cell lines. Data are the means ± SEM of three experiments. **P < 0.01 vectors containing the wild type or mutant LATS1 3 UTR (Fig. 3e) and mir-424 mimic or inhibitor were co-transfected into HGC-27 or MKN-28 cells. Intriguingly, the luciferase activity of wild type LATS1 3 UTR evidently decreased in mir-424 mimic group in HGC-27 cells (Fig. 3f), but increased in mir-424 inhibitor group in MKN-28 cells compared with the NC group (Fig. 3g). However, the luciferase activity of mutant LATS1 3 UTR had no difference between mir-424 mimic or inhibitor group and NC group. Ectopic expression of mir-424 promotes GC cell growth and invasion via targeting LATS1 gene To further observe the effects of mir-424 on LATS1 expression in GC cells, we performed the functional experiments such as MTT, cell colony formation and Transwell assays. First, the expression level of LATS1 was examined after transfection with mir-424 mimic and (or) LATS1 in HGC-27 cells, and mir-424 inhibitor and (or) sh-lats1 in MKN-28 cells indicated by qrt-pcr (Additional file 4: Figure S3a). Then, the promoting effects of mir-424 mimic on cell proliferation (Fig. 4a), colony formation (Fig. 4c) and invasive potential (Fig. 4e) were reversed by co-transfection of LATS1 overexpression vector in HGC-27 cells, but the inhibitory effects of mir-424 inhibitor on cell proliferation (Fig. 4b), colony formation (Fig. 4d) and invasive potential (Fig. 4f) were rescued by cotransfection of LATS1 shrna vector in MKN-28 cells. These results suggested that mir-424 might promote GC growth and invasion by targeting LATS1 gene. Identification and characteristics of circlarp4 in GC cells Mounting evidence shows that circrnas as a novel type of ncrnas sponge mirnas, regulate gene transcription and interact with RBPs involved in tumorigenesis [20, 21]. To identify the circrnas that sponge mir-424 in GC, we applied the circrna expression profile and circbase and microrna.org software to screen out 30 circrnas that could sponge and bind to the mir-424 (Fig. 5a, Additional file 1: Table S7). Given the upregulation of mir-424 in GC, 15 circrnas that were downregulated in GC were selected for further analysis (Fig. 5a, Additional file 1: Table S7). According to the restrictive conditions (P < 0.001, Fold change > 2), among 15 circrnas, only has_circ_ conformed to this requirement (Additional file 1: Table S7). We noted that circ_ (chr12:50,848,096 50,855,130, Fig. 5b) is derived from exon 9, 10 regions within La ribonucleoprotein domain family member 4 (LARP4) locus, which is located on chromosome 12q We termed circ_ as circlarp4, whose genomic sequence is 7034 nt and spliced mature sequence length is 317 nt. The genomic position reveals that the ninth and tenth exons from the LARP4 gene are intermediated by long introns (Fig. 5b). According to the qrt-pcr analysis, compared withthelinearlarp4,circlarp4gaverisetoresistanceto digestion induced by RNase R exonuclease, indicating that circlarp4 harbors a loop structure (Fig. 5c). We next observed the stability and localization of circlarp4. After treatment with Actinomycin D, an inhibitor of transcription at the indicated time points, total RNA was separated from HGC-27 and MKN-28 cells. As a result, qrt-pcr analysis showed that the transcript half-life of circlrp4 exceeded 24 h, while that of linear LARP4 displayed about 6 h in

8 Zhang et al. Molecular Cancer (2017) 16:151 Page 8 of 16 Fig. 4 Ectopic expression of mir-424 promotes GC cell growth and invasion by targeting LATS1 gene. a, b Cell proliferation activity, c, d colony formation capacity and e, f invasive potential were respectively measured by MTT, cell colony formation and Transwell assays after transfection with mir-424 mimic+lats1 overexpression vector or mir-424 inhibitor+sh-lats1 vector in HGC-27 or MKN-28 cell lines. Data are the means ± SEM of three experiments. *P < 0.05; **P < 0.01 Fig. 5 Identification and characteristics of circlarp4 in GC cells. a CircRNA microarray chip was used to identify the differentially expressed circrnas between GC and adjacent normal tissues. b The genomic loci of the LATP4 gene and circlarp4. Arrows represent divergent primers that bind to the genomic region of circlarp4. c qrt-pcr analysis of circlarp4 and LARP4 RNA after treatment with RNase R in HGC-27 and MKN- 28 cells. d qrt-pcr analysis of circlarp4 and LARP4 RNA after treatment with Actinomycin D at the indicated time points in HGC-27 and MKN-28 cells. e qrt-pcr analysis of circlarp4 and LARP4 RNA in the cytoplasm or the nucleus in HGC-27 and MKN-28 cells. e The expression level of circlarp4 was decreased in GC tissues compared the normal tissues. f The cellular localization of circlarp4 in GC tissue cells and adjacent normal tissue cells. The nuclei were stained with DAPI for blue color, and the cytoplasmic circlarp4 was stained for green color

9 Zhang et al. Molecular Cancer (2017) 16:151 Page 9 of 16 HGC-27 and MKN-28 cells (Fig. 5d), indicating that circlarp4ishighlystableingccells. Cytoplasmic and nuclear RNA analysis by qrt-pcr showed that circlarp4 was preferentially localized in the cytoplasm in HGC-27 and MKN-28 cells (Fig. 5e). Furthermore, we utilized FISH to assess circlarp4 expression level and localization in GC tissue cells, and found that circlarp4 had low expression in GC tissues compared with the adjacent normal (Fig. 5f) and the green fluorescent distribution position indicated that circlarp4 was mainly localized in the cytoplasm of both GC and normal tissue cells (Fig. 5g). Collectively, these results suggest that circlarp4 is a highly stable and cytoplasmic circrna derived from the LARP4 gene locus. The effects of circlarp4 on GC cell proliferation and invasion in vitro The special characteristics of circlarp4 spurred our interest in assessing the biological functions of circlarp4 in GC cells. We first detected the expression level of circlarp4 in GC cell lines by qrt-pcr and found circlarp4 was downregulated in GC cell lines compared with GES-1 cells but had no correlation with the expression of mir-424 and LATS1 in GC cells (Additional file 4: Figure S3b). Then, we designed the circlarp4 overexpression and interference sequences against the back-splicing sequence of circlarp4 (Fig. 6a). After circlarp4 overexpression or sirna vector was respectively transfected into HGC-27 and MKN-28 cells for 48 h, their transfection efficiency was determined as shown in Fig. 6b. Subsequent cell proliferation and colony formation assays revealed that ectopic expression of circlarp4 inhibited cell growth and colony-forming capacity of GC cells, while knockdown of circlarp4 reversed these effects (Additional file 4: Figure S3c, d). EdU incorporation assay showed that the proliferation of HGC-27 cells was impaired by transfection with circlarp4 overexpression vector, but was strengthened by knockdown of circlarp4 (Fig. 6c). Transwell invasion assay demonstrated that cell invasive potential was weakened by circlarp4 overexpression, but was enhanced by knockdown of circlarp4 (Fig. 6d). Taken together, these results imply that that circlarp4 may be a tumor suppressive factor in GC cells. circlarp4 Acts as a mirna sponge for mir-424 in GC cells Given that circrnas can act as mirnas sponge and circlarp4 is stable in the cytoplasm, we first applied the ComiR prediction tool as well as the circlarp4 genomic sequence to predict 5 mirnas that have the potential to bind to circlarp4 (Fig. 7a and Additional file 5: Figure S4a). We constructed a circlarp4 fragment and incorporated it into downstream of the luciferase reporter gene, and hypothesized that circlarp4 related 5 mirnas could reduce the luciferase activity of circlarp4. We then carried out a luciferase assay using these 5 mirnas. The luciferase reporter vector for pmir-luc-circlarp4 was co-transfected with each mirna mimic into HEK-293 T cells. Compared with the negative control (NC), mir-424 lowered the luciferase reporter activity by approximately 75% (Fig. 7b), indicating that mir-424 might have the greater potential to bind to circlarp4 compared with other 4 mirnas. Afterwards, we examined the mutual regulation between circlarp4 and mir-424 by qrt-pcr analysis, which showed that circlarp4 overexpression reduced the expression level of mir-424 in HCG-27 cells, while circlarp4 knockdown increased the expression level of mir-424 in MKN-28 cells (Fig. 7c1), but mir-424 mimic or inhibitor had no influence on the expression of circlarp4 (Additional file 5: Figure S4b). Luciferase reporter vectors containing the wild type or mutant circlarp4 (Additional file 5: Figure S4c) and mir-424 mimic were co-transfected into HGC-27 and MKN-28 cells. Interestingly, the luciferase activity of wild type circlarp4 significantly decreased in mir-424 mimic group in HGC-27 cells and increased in mir-424 inhibitor group in MKN-28 cells, compared with their NC group (Fig. 7c2). However, the luciferase activity of mutant circlarp4 had no difference between mir-424 group and NC group in these two cell lines. Moreover, the luciferase activity of wild type LATS1 3 UTR was decreased by mir-424 mimic but increased by co-transfection with mir-424 mimic and circlarp4 in HGC-27 cells (Additional file 5: Figure S4e), while the luciferase activity of wild type LATS1 3 UTR was increased by mir-424 inhibitor but decreased by cotransfection with mir-424 inhibitor and si-circlarp4 in MKN-28 cells (Additional file 5: Figure S4f). However, the luciferase activity of mutant LATS1 had no difference between NC, mir-424 and co-transfection groups (Additional file 5: Figure S4e, f). Furthermore, we used the online circular RNA interactome to reveal a high degree of AGO2 occupancy in the region of circlarp4 (Additional file 1: Table S8). To confirm this result, we performed RNA immunoprecipitation (RIP) for AGO2 in HGC-27 and MKN-28 cells and investigated the expression level of endogenous circlarp4 and mir-424 pulled-down from AGO2- expressed cells by qrt-pcr analysis. The results indicated that Ago2 antibody precipitated the AGO2 protein from the cell lysates (Fig. 7d, up panel), and circlarp4 and mir-424 were highly expressed in the AGO2 pellet compared with those in the input control (Fig. 7d, down panel). We also observed the expression of LATS1, a target of mir-424 and its downstream gene YAP after co-transfection with circlarp4 and mir-424 mimic or si-circlarp4 and mir-424 inhibitor by qrt-pcr (Additional file 5: Figure S4d) and western blot analysis

10 Zhang et al. Molecular Cancer (2017) 16:151 Page 10 of 16 Fig. 6 The effects of circlarp4 on GC cell proliferation and invasion. a Schematic representation of target sequences of the sirnas specific to the back-splicing junction of circlarp4. b qrt-pcr analysis of the transfection efficiency of circlarp4 overexpression or si-circlarp4 vectors after transfection for 48 h in HGC-27 or MKN-28 cells. c Observation of DNA synthesis of HGC-27 or MKN-28 cells transfected with circlarp4 overexpression or si-circlarp4 vectors by EdU assay. d Determination of cell invasive potential of HGC-27 or MKN-28 cells transfected with circlarp4 overexpression or si-circlarp4 vectors by Transwell assay. Data are the means ± SEM of three experiments. *P <0.05;**P <0.01 (Fig. 7e), indicating that circlarp4 revived LATS1 and p-yap expression and decreased YAP expression and counteracted the effects of mir-424 on their expression in HGC-27 cells. Reversely, knockdown of circlarp4 reduced LATS1 and p-yap expression and increased YAP expression and reversed the effect of mir-424 inhibitor on their expression in MKN-28 cells. Moreover, ectopic expression of circlarp4 attenuated the proliferative effect caused by mir-424 in HGC-27 cells, and knockdown of circlarp4 weakened the anti-proliferative effect induced by mir-424 inhibitor in MKN-28 cells (Fig. 7f). Altogether, these results inferred that circlarp4 could sponge mir-424 and inhibit its activity in GC cells. circlarp4 Acts as an independent prognostic factor for OS of GC patients FISH analysis showed that the expression level of circlarp4 was markedly downregulated in GC tissues compared with the pair-matched normal tissues (Fig. 8a). In addition, we also found that circlarp4 expression level was decreased in GC patients with tumor size (TS) > 3 cm or stage N2 + N3 compared with those with TS 3 cm or stage N0 + N1 (Fig. 8b). We further analysed the correlation of circlarp4 expression level with various clinicopathological characteristics of 80 GC patients, who were divided into two groups-circlarp4 high expression and circlarp4 low expression according to the cut-off value (Additional file 6: Figure S5a).

11 Zhang et al. Molecular Cancer (2017) 16:151 Page 11 of 16 Fig. 7 circlarp4 acts as a mirna sponge for mir-424 in GC cells. a Schematic representation of potential binding sites of mirnas with circlarp4. b The luciferase activity of circlarp4 after transfection with pmir-luc-circlarp4 combined with each mirna mimic in HEK-293 T cells. c1 The effects of circlarp4 overexpression of knockdown on the expression level of mir-424 in HCG-27 or MKN-28 cell line indicated by qrt-pcr. c2 The luciferase activity of wild type circlarp4 3 UTR or mutant circlarp4 3 UTR after transfection with mir-424 mimic or inhibitor in HGC-27 or MKN-28 cell lines. d AGO2 RNA immunoprecipitation (RIP) assay for the amount of circlarp4 and mir-424 in HGC-27 or MKN-28 cells. Ago2 was detected using IP-western blot (up panel), and circlarp4 and mir-424 expression levels were detected using qrt-pcr (down panel). e Western blot analysis of the expression levels of YAP and p-yap (S127) after transfection with circlarp4 + mir-424 in HGC-27 cells or si-circlarp4 + mir-424 inhibitor in MKN-28 cells. f MTT analysis of cell proliferation of HGC-27 or MKN-28 cells after transfection with circlarp4 + mir-424 or si-circlarp4 + mir- 424 inhibitor. Data are the means ± SEM of three experiments. *P < 0.05; **P < 0.01 High expression of circlarp4 was found negatively associated with the tumor size and lymphatic metastasis, but had no correlation with other clinical and pathological parameters (Additional file 1: Table S9). Therefore, circlarp4 expression might be related with early stages of this disease. Kaplan-Meier analysis showed that GC patients or early stage patients (stagei + II) (log-rank test, Fig. 8c) rather than late stage ones (stage II + III or stage III) (log-rank test, Additional file 6: Figure S5b) with circlarp4 high expression had a significantly longer OS than those with circlarp4 low expression. We then analysed the associations between circlarp4 expression level and the therapeutic outcomes in 72 GC patients treated with adjuvant chemotherapy of oxaliplatin and 5-Fu. These patients or early stage ones (Fig. 8d) rather than late stage ones (stage II + III or stage III) (Additional file 6: Figure S5c) with circlarp4 high expression had more favorable therapeutic outcome than those with circlarp4 low expression. As for the patients without chemotherapy, circlarp4 high or low expression had no impact on the survival of these patients (Additional file 6: Figure S5d). To define whether the ability of circlarp4 to predict survival was independent of other clinicopathological factors of GC patients, univariate and multivariate Cox proportional hazards analyses revealed that circlarp4 level and lymphatic metastasis were independent prognostic factors for OS of GC patients (Additional file 1: Tables S10). Discussion We have previously reported that LATS1 expression was downregulated in GC tissues [11]. Here, we verified the decreased expression of LATS1 in GC tissues by using the large sample size of TCGA sequencing data. Despite individual study having shown that mir-21 enhances radio-resistance of cervical cancer by targeting LATS1 [29], we here filtered out 5 mirnas (mir-16, mir-15a, mir-15b, mir-590 and mir-424), which possessed very high stringency with LATS1 gene 3 UTR. The expressions levels of these mirnas were upregulated in GC tissues, and except for mir-16, other mirnas had negative correlation with LATS1 expression. Taken into account the strongest correlation of mir-424 with LATS1

12 Zhang et al. Molecular Cancer (2017) 16:151 Page 12 of 16 Fig. 8 circlarp4 acts as an independent prognostic factor for OS of GC patients. a Schematic representation of the low expression level of circlarp4 in GC tissues compared with adjacent normal tissues by FISH analysis. b The expression levels of circlarp4 in GC patients with TS >3 cm or 3 cm and those with stage N2 + N3 or stage N0 + N1. c Kaplan-Meier analysis of the correlation of circlarp4 expression level with OS of GC patients or early stage ones (stagei + II). d Kaplan-Meier analysis of the correlation of circlarp4 expression level with therapeutic outcomes of GC patients or early stage ones (stagei + II) treated with adjuvant chemotherapy of oxaliplatin and 5-Fu expression in GC tissues, we analyzed the correlation of mir-424 and LATS1 expression with clinicopathological characteristic and prognosis of GC patients. We found that both of mir-424 high expression and LATS1 low expression were associated with pathological stage, OS and recurrence of GC patients, and mir-424 but not LATS1 gene was an independent prognostic factor for tumor recurrence of GC, suggesting a potential diagnostic marker for GC patients. In view of the tissue diversity, aberrant expressions of mir-424 have been investigated in a variety of cancers. On the one hand, mir-424, downregulated in hepatocellular carcinoma (HCC) [30], cervical cancer [31] and esophageal carcinoma [32], inhibits cell growth and invasion

13 Zhang et al. Molecular Cancer (2017) 16:151 Page 13 of 16 Fig. 9 Schematic representation of the proposed mechanism of circlarp4 in GC cells. circlarp4 acted as a mir-424 sponge to regulate the mir-424/ LATS1/YAP pathway in GC cells. Decreased circlarp4 expression in GC increased the activity of mir-424, which downregulated the expression of LATS1 and upregulated LATS1 downstream effector, thereby promoting gastric tumorigenesis and progression [30 33], reverses epithelial-mesenchymal transition [34] and chemo-resistance [35], and strengthens the sensitivity of chemotherapy and radiotherapy [36, 37], indicating a tumor suppressive role in cancers. On the other hand, mir-424 promotes tumorigenesis and progression of prostate cancer [38] and reduces chemotherapy sensitivity by inhibiting apoptosis in breast cancer [39]. Our present studies showed that, mir-424 mimic stimulated cell growth and invasion, while mir-424 inhibitor reversed these effects by targeted regulation of LATS1 gene. Additionally, elevated mir-424 expression is also associated with metastasis and poor prognosis of non-small cell lung cancer [40] and accelerates gastric cancer proliferation [41]. These data support our findings that mir-424 may harbor an oncogenicroleingc. Increasing evident shows that circrnas are not simply by-products of splicing errors, rather they can modulate gene expression and act as mirna sponge involved in cancer pathogenesis [25 27, 42]. CircRNAs can function as tumor suppressors or oncogenes in cancers. For example, circccdc66, circ_ and circhiat1 promote tumor growth and metastasis [43 45], while circzkscan1 and circznf292 suppress tumor progression by multiple signaling pathways [46, 47]. Here, we identified a circrna derived from LARP4 gene locus, termed as circlarp4, which had the potential to sponge mir-424. Recent studies have shown that LARP4 as a La-related RNA-binding protein inhibits cancer cell migration and invasion [48]. We found that circlarp4 was differentially-expressed between GC and adjacent normal tissues, and was derived from Exon 9, 10 of the LARP4 gene and intermediate long intron. Compared with the linear LARP4, circlarp4 exhibited stable expression in GC cells in a time-dependent manner, and was mainly localized in the cytoplasm. Further functional experiments revealed that overexpression of circlarp4 inhibited DNA synthesis, cell proliferation and invasion by sponging mir-424 and regulating the expression of LATS1 and YAP genes, but knockdown of circlarp4 reversed these effects, suggesting that circlarp4 may function as a tumor suppressive factor in GC via regulation of mir-424/lats1/yap signaling pathway.

14 Zhang et al. Molecular Cancer (2017) 16:151 Page 14 of 16 circrnas can act as promising potential biomarkers for cancer diagnosis and prognosis due to their high stability and specific loop structure [43 45]. It has been reported that circpvt1, circ_ is and fourcircrna-based classifier are independent prognostic markers for survival and recurrence of patients with GC [49, 50, 51]. In this study, we also found that circlarp4 expression was downregulated in GC tissues, and was correlated with tumor size and lymphatic metastasis, and could act an independent prognostic marker for OS of GC patients as well as the patients with chemotherapy. Moreover, patients with circlarp4 high expression had a significantly better survival than those with circlarp4 low expression. Conclusion In summary, we identified an oncogenic mir-424, which was negatively correlated with LATS1 expression. High expression of mir-424 or low expression of LATS1 was positively associated with pathological stage, OS and recurrence of patients with GC, and mir-424 promoted cell growth and invasion by targeting LATS1 gene. We further characterized a circlarp4 derived from LARP4 gene and demonstrated that circlarp4 was a tumor suppressive factor in GC by sponging mir-424 and regulating LATS1 expression (Fig. 9). The regulatory network involving circlarp4/mir-424/lats1 axis may highlight a better understanding of gastric tumorigenesis and progression. Additional files Additional file 1: Table S1. Clinicopathological data of GC patients from TCGA database. Table S2 Clinicopathological data of GC patients from Tissue Microarray. Table S3 List of primers of the genes. Table S4 Correlation of LATS1 and mir-424 expression with clinicopathologic features of GC patients. Table S5 Summary of univariate and multivariate Cox regression analysis of recurrence duration. Table S6 Summary of univariate and multivariate Cox regression analysis of recurrence duration. Table S7 Identification of circrnas sponging mir-424 in gastric cancer. Table S8 AGO2 binding sites in circlarp4 genomic region. Table S9 Correlation of circlarp4 expression with clinicopathologic characteristics of GC patients. Table S10 Summary of univariate and multivariate Cox regression analysis of overall survival duration. (DOCX 49 kb) Additional file 2: Figure S1. The genetic alteration frequency and methylation levels of LATS1 in GC patients. a The genetic alteration frequency of LATS1 amplification, deletion and mutation in different pathological subtypes of GC. b The correlation of LATS1 gene expression with its putative copy number alterations in GC. c The correlation of LATS1 gene expression with its methylation level in GC. d The correlation of LATS1 gene expression with mir-15b-5p in GC. (PDF 2166 kb) Additional file 3: Figure S2. The correlation of LATS1 and mir-424 expression with OS and recurrence of GC patients. a and b Kaplan Meier analysis of the correlation of LATS1 and mir-424 with OS of GC patients in TCTA RNA sequencing database. c Kaplan Meier analysis of the correlation of LATS1 expression with the recurrence of early stage patients (stage I + II) or late stage ones (stage III + IV). d Kaplan-Meier plotter analysis of the correlation of LATS1 expression with OS of GC patients with stage II or stage IV. (E) Kaplan-Meier plotter analysis of the correlation of LATS1 expression with recurrence of GC patients with stage II or stage III. (PDF 2418 kb) Additional file 4: Figure S3. TheeffectsofcircLARP4onGCcell proliferation. a The expression level of LATS1 was examined after transfection with mir-424 mimic and (or) LATS1 in HGC-27 cells, and mir-424 inhibitor and (or) sh-lats1 in MKN-28 cells indicated by qrt-pcr. b The expression level of circlarp4 was detected in GC cell lines and GES-1 cells by qrt-pcr and spearman correlation analysis of the correlation of circlarp4 with mir-424 and LATS1 expression in GC cells. c Detection of cell proliferation of HGC-27 or MKN-28 cells transfected with circlarp4 overexpression or si-circlarp4 vectors by MTT assay. d Assessment of cell colony formation of HGC-27 or MKN-28 cells transfected with circlarp4 overexpression or si-circlarp4 vectors. *P <0.05;**P < (PDF 3665 kb) Additional file 5: Figure S4. The binding sites of circlarp4 with mirnas. a Schematic representation of potential binding sites of mirnas with circlarp4. b The effects of mir-424 mimic or inhibitor on the expression level of circlarp4 in HCG-27 or MKN-28 cell line indicated by qrt-pcr. c The binding sites of wild type or mutant circlarp4 3 UTR with mir p. d qrt-pcr analysis of the expression levels of LATS1 and YAP after transfection with circlarp4 + mir-424 in HGC-27 cells or sicirclarp4 + mir-424 inhibitor in MKN-28 cells. e the luciferase activity of wild type LATS1 3 UTR was examined by co-transfection with mir-424 mimic + circlarp4 in HGC-27 cells. f the luciferase activity of wild type LATS1 3 UTR was detected by co-transfection with mir-424 inhibitor + sicirclarp4 in MKN-28 cells. *P < 0.05; **P < (PDF 2681 kb) Additional file 6: Figure S5. Correlation of circlarp4 expression level with OS of GC patients. a Receiver operating characteristic (ROC) curve analysis of the cutoff value, sensitivity, specificity and AUC of circlarp4 in GC patients. b Kaplan-Meier analysis of the correlation of circlarp4 expression with OS of GC patients with stage II + III or stage III. c Kaplan-Meier analysis of the correlation of circlarp4 expression level with therapeutic outcomes of GC patients with stage II + III or stage III treated with adjuvant chemotherapy of oxaliplatin and 5-Fu. d Kaplan-Meier analysis of the correlation of circlarp4 expression level with therapeutic outcomes of GC patients without adjuvant chemotherapy. (PDF 3527 kb) Acknowledgements We thank Shanghai KANGCHEN (Shanghai, PR, China) for providing the technical support for our study. Funding This study was supported by grants from the National Natural Science Foundation of China (No ), Hong Kong Scholars Program (No. XJ ), Shanghai Science and Technology Commission Western Medicine Guide project (No ) and Shanghai Jiao Tong University School of Medicine doctoral innovation fund (No. BXJ201737). Authors contributions JSZ and JZ conceived of the study and carried out its design and JZ drafted the manuscript. HL, LDH, RZ, YXH and XYC performed the experiments. JZ and GW conducted the statistical analysis. JZ wrote the paper and JSZ revised the paper. All authors read and approved the final manuscript. Ethics approval and consent to participate The present study was approved by the Hospital s Protection of Human Subjects Committee. Competing interests The authors declare that they have no competing interests. Publisher s Note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. Author details 1 Department of Gastroenterology, Shanghai Jiao Tong University Affiliated Sixth People s Hospital, No. 600 Yishan Road, Shanghai , China. 2 Department of Gastroenterology, Shanghai Ninth People s Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the

Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the genome-wide methylation microarray data. Mean ± s.d.; Student

More information

Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating mirnas

Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating mirnas Wang et al. Journal of Hematology & Oncology (2016) 9:90 DOI 10.1186/s13045-016-0323-9 RESEARCH Bmi-1 regulates stem cell-like properties of gastric cancer cells via modulating mirnas Open Access Xiaofeng

More information

RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers

RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers Xu et al. Molecular Cancer (2019) 18:8 https://doi.org/10.1186/s12943-018-0932-8 LETTER TO THE EDITOR RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers

More information

HEK293FT cells were transiently transfected with reporters, N3-ICD construct and

HEK293FT cells were transiently transfected with reporters, N3-ICD construct and Supplementary Information Luciferase reporter assay HEK293FT cells were transiently transfected with reporters, N3-ICD construct and increased amounts of wild type or kinase inactive EGFR. Transfections

More information

CircHIPK3 is upregulated and predicts a poor prognosis in epithelial ovarian cancer

CircHIPK3 is upregulated and predicts a poor prognosis in epithelial ovarian cancer European Review for Medical and Pharmacological Sciences 2018; 22: 3713-3718 CircHIPK3 is upregulated and predicts a poor prognosis in epithelial ovarian cancer N. LIU 1, J. ZHANG 1, L.-Y. ZHANG 1, L.

More information

Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v)

Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v) SUPPLEMENTARY MATERIAL AND METHODS Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v) top agar (LONZA, SeaKem LE Agarose cat.5004) and plated onto 0.5% (w/v) basal agar.

More information

Circular RNA_LARP4 is lower expressed and serves as a potential biomarker of ovarian cancer prognosis

Circular RNA_LARP4 is lower expressed and serves as a potential biomarker of ovarian cancer prognosis European Review for Medical and Pharmacological Sciences 2018; 22: 7178-7182 Circular RNA_LARP4 is lower expressed and serves as a potential biomarker of ovarian cancer prognosis T. ZOU, P.-L. WANG, Y.

More information

Expression of mir-1294 is downregulated and predicts a poor prognosis in gastric cancer

Expression of mir-1294 is downregulated and predicts a poor prognosis in gastric cancer European Review for Medical and Pharmacological Sciences 2018; 22: 5525-5530 Expression of mir-1294 is downregulated and predicts a poor prognosis in gastric cancer Y.-X. SHI, B.-L. YE, B.-R. HU, X.-J.

More information

Berberine Sensitizes Human Ovarian Cancer Cells to Cisplatin Through mir-93/ PTEN/Akt Signaling Pathway

Berberine Sensitizes Human Ovarian Cancer Cells to Cisplatin Through mir-93/ PTEN/Akt Signaling Pathway Chen Accepted: et al.: February Berberine 24, Sensitizes 2015 Ovarian Cancer Cells to Cisplatin www.karger.com/cpb 956 1421-9778/15/0363-0956$39.50/0 Original Paper This is an Open Access article licensed

More information

mirna Dr. S Hosseini-Asl

mirna Dr. S Hosseini-Asl mirna Dr. S Hosseini-Asl 1 2 MicroRNAs (mirnas) are small noncoding RNAs which enhance the cleavage or translational repression of specific mrna with recognition site(s) in the 3 - untranslated region

More information

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells Margaret S Ebert, Joel R Neilson & Phillip A Sharp Supplementary figures and text: Supplementary Figure 1. Effect of sponges on

More information

Circular RNAs (circrnas) act a stable mirna sponges

Circular RNAs (circrnas) act a stable mirna sponges Circular RNAs (circrnas) act a stable mirna sponges cernas compete for mirnas Ancestal mrna (+3 UTR) Pseudogene RNA (+3 UTR homolgy region) The model holds true for all RNAs that share a mirna binding

More information

mir 375 inhibits the proliferation of gastric cancer cells by repressing ERBB2 expression

mir 375 inhibits the proliferation of gastric cancer cells by repressing ERBB2 expression EXPERIMENTAL AND THERAPEUTIC MEDICINE 7: 1757-1761, 2014 mir 375 inhibits the proliferation of gastric cancer cells by repressing ERBB2 expression ZHI YONG SHEN *, ZI ZHEN ZHANG *, HUA LIU, EN HAO ZHAO

More information

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel)

(a) Significant biological processes (upper panel) and disease biomarkers (lower panel) Supplementary Figure 1. Functional enrichment analyses of secretomic proteins. (a) Significant biological processes (upper panel) and disease biomarkers (lower panel) 2 involved by hrab37-mediated secretory

More information

microrna Presented for: Presented by: Date:

microrna Presented for: Presented by: Date: microrna Presented for: Presented by: Date: 2 micrornas Non protein coding, endogenous RNAs of 21-22nt length Evolutionarily conserved Regulate gene expression by binding complementary regions at 3 regions

More information

a) List of KMTs targeted in the shrna screen. The official symbol, KMT designation,

a) List of KMTs targeted in the shrna screen. The official symbol, KMT designation, Supplementary Information Supplementary Figures Supplementary Figure 1. a) List of KMTs targeted in the shrna screen. The official symbol, KMT designation, gene ID and specifities are provided. Those highlighted

More information

RNA extraction, RT-PCR and real-time PCR. Total RNA were extracted using

RNA extraction, RT-PCR and real-time PCR. Total RNA were extracted using Supplementary Information Materials and Methods RNA extraction, RT-PCR and real-time PCR. Total RNA were extracted using Trizol reagent (Invitrogen,Carlsbad, CA) according to the manufacturer's instructions.

More information

Long noncoding RNA DARS-AS1 acts as an oncogene by targeting mir-532-3p in ovarian cancer

Long noncoding RNA DARS-AS1 acts as an oncogene by targeting mir-532-3p in ovarian cancer European Review for Medical and Pharmacological Sciences 2019; 23: 2353-2359 Long noncoding RNA DARS-AS1 acts as an oncogene by targeting mir-532-3p in ovarian cancer K. HUANG, W.-S. FAN, X.-Y. FU, Y.-L.

More information

Supplementary data Supplementary Figure 1 Supplementary Figure 2

Supplementary data Supplementary Figure 1 Supplementary Figure 2 Supplementary data Supplementary Figure 1 SPHK1 sirna increases RANKL-induced osteoclastogenesis in RAW264.7 cell culture. (A) RAW264.7 cells were transfected with oligocassettes containing SPHK1 sirna

More information

mir-509-5p and mir-1243 increase the sensitivity to gemcitabine by inhibiting

mir-509-5p and mir-1243 increase the sensitivity to gemcitabine by inhibiting mir-509-5p and mir-1243 increase the sensitivity to gemcitabine by inhibiting epithelial-mesenchymal transition in pancreatic cancer Hidekazu Hiramoto, M.D. 1,3, Tomoki Muramatsu, Ph.D. 1, Daisuke Ichikawa,

More information

Epstein-Barr virus driven promoter hypermethylated genes in gastric cancer

Epstein-Barr virus driven promoter hypermethylated genes in gastric cancer RESEARCH FUND FOR THE CONTROL OF INFECTIOUS DISEASES Epstein-Barr virus driven promoter hypermethylated genes in gastric cancer J Yu *, KF To, QY Liang K e y M e s s a g e s 1. Somatostatin receptor 1

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1 Asymmetrical function of 5p and 3p arms of mir-181 and mir-30 families and mir-142 and mir-154. (a) Control experiments using mirna sensor vector and empty pri-mirna overexpression

More information

CircMTO1 inhibits cell proliferation and invasion by regulating Wnt/β-catenin signaling pathway in colorectal cancer

CircMTO1 inhibits cell proliferation and invasion by regulating Wnt/β-catenin signaling pathway in colorectal cancer European Review for Medical and Pharmacological Sciences 2018; 22: 8203-8209 CircMTO1 inhibits cell proliferation and invasion by regulating Wnt/β-catenin signaling pathway in colorectal cancer Z. GE,

More information

mir-19a promotes colorectal cancer proliferation and migration by targeting TIA1

mir-19a promotes colorectal cancer proliferation and migration by targeting TIA1 Liu et al. Molecular Cancer (2017) 16:53 DOI 10.1186/s12943-017-0625-8 RESEARCH Open Access mir-19a promotes colorectal cancer proliferation and migration by targeting TIA1 Yanqing Liu 1, Rui Liu 2, Fei

More information

Type of file: PDF Size of file: 0 KB Title of file for HTML: Supplementary Information Description: Supplementary Figures

Type of file: PDF Size of file: 0 KB Title of file for HTML: Supplementary Information Description: Supplementary Figures Type of file: PDF Size of file: 0 KB Title of file for HTML: Supplementary Information Description: Supplementary Figures Supplementary Figure 1 mir-128-3p is highly expressed in chemoresistant, metastatic

More information

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Supplementary Information p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Yuri Shibata, Masaaki Oyama, Hiroko Kozuka-Hata, Xiao Han, Yuetsu Tanaka,

More information

Profiles of gene expression & diagnosis/prognosis of cancer. MCs in Advanced Genetics Ainoa Planas Riverola

Profiles of gene expression & diagnosis/prognosis of cancer. MCs in Advanced Genetics Ainoa Planas Riverola Profiles of gene expression & diagnosis/prognosis of cancer MCs in Advanced Genetics Ainoa Planas Riverola Gene expression profiles Gene expression profiling Used in molecular biology, it measures the

More information

Research Communication

Research Communication IUBMB Life, 64(7): 628 635, July 2012 Research Communication MicroRNA-181b Targets camp Responsive Element Binding Protein 1 in Gastric Adenocarcinomas Lin Chen*, Qian Yang*, Wei-Qing Kong*, Tao Liu, Min

More information

Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer. Application Note

Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer. Application Note Analysis of small RNAs from Drosophila Schneider cells using the Small RNA assay on the Agilent 2100 bioanalyzer Application Note Odile Sismeiro, Jean-Yves Coppée, Christophe Antoniewski, and Hélène Thomassin

More information

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14-

(A) PCR primers (arrows) designed to distinguish wild type (P1+P2), targeted (P1+P2) and excised (P1+P3)14- 1 Supplemental Figure Legends Figure S1. Mammary tumors of ErbB2 KI mice with 14-3-3σ ablation have elevated ErbB2 transcript levels and cell proliferation (A) PCR primers (arrows) designed to distinguish

More information

Supplementary Figure S1. Venn diagram analysis of mrna microarray data and mirna target analysis. (a) Western blot analysis of T lymphoblasts (CLS)

Supplementary Figure S1. Venn diagram analysis of mrna microarray data and mirna target analysis. (a) Western blot analysis of T lymphoblasts (CLS) Supplementary Figure S1. Venn diagram analysis of mrna microarray data and mirna target analysis. (a) Western blot analysis of T lymphoblasts (CLS) and their exosomes (EXO) in resting (REST) and activated

More information

High expression of fibroblast activation protein is an adverse prognosticator in gastric cancer.

High expression of fibroblast activation protein is an adverse prognosticator in gastric cancer. Biomedical Research 2017; 28 (18): 7779-7783 ISSN 0970-938X www.biomedres.info High expression of fibroblast activation protein is an adverse prognosticator in gastric cancer. Hu Song 1, Qi-yu Liu 2, Zhi-wei

More information

Long noncoding RNA linc-ubc1 promotes tumor invasion and metastasis by regulating EZH2 and repressing E-cadherin in esophageal squamous cell carcinoma

Long noncoding RNA linc-ubc1 promotes tumor invasion and metastasis by regulating EZH2 and repressing E-cadherin in esophageal squamous cell carcinoma JBUON 2018; 23(1): 157-162 ISSN: 1107-0625, online ISSN: 2241-6293 www.jbuon.com E-mail: editorial_office@jbuon.com ORIGINAL ARTICLE Long noncoding RNA linc-ubc1 promotes tumor invasion and metastasis

More information

m 6 A mrna methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer

m 6 A mrna methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer SUPPLEMENTARY INFORMATION Articles https://doi.org/10.1038/s41556-018-0174-4 In the format provided by the authors and unedited. m 6 A mrna methylation regulates AKT activity to promote the proliferation

More information

Supplementary Figure S1 Expression of mir-181b in EOC (A) Kaplan-Meier

Supplementary Figure S1 Expression of mir-181b in EOC (A) Kaplan-Meier Supplementary Figure S1 Expression of mir-181b in EOC (A) Kaplan-Meier curves for progression-free survival (PFS) and overall survival (OS) in a cohort of patients (N=52) with stage III primary ovarian

More information

FOXO Reporter Kit PI3K/AKT Pathway Cat. #60643

FOXO Reporter Kit PI3K/AKT Pathway Cat. #60643 Data Sheet FOXO Reporter Kit PI3K/AKT Pathway Cat. #60643 Background The PI3K/AKT signaling pathway is essential for cell growth and survival. Disruption of this pathway or its regulation has been linked

More information

Supplementary Information Titles Journal: Nature Medicine

Supplementary Information Titles Journal: Nature Medicine Supplementary Information Titles Journal: Nature Medicine Article Title: Corresponding Author: Supplementary Item & Number Supplementary Fig.1 Fig.2 Fig.3 Fig.4 Fig.5 Fig.6 Fig.7 Fig.8 Fig.9 Fig. Fig.11

More information

CircPSMC3 suppresses the proliferation and metastasis of gastric cancer by acting as a competitive endogenous RNA through sponging mir-296-5p

CircPSMC3 suppresses the proliferation and metastasis of gastric cancer by acting as a competitive endogenous RNA through sponging mir-296-5p Rong et al. Molecular Cancer (2019) 18:25 https://doi.org/10.1186/s12943-019-0958-6 RESEARCH CircPSMC3 suppresses the proliferation and metastasis of gastric cancer by acting as a competitive endogenous

More information

Oncolytic Adenovirus Complexes Coated with Lipids and Calcium Phosphate for Cancer Gene Therapy

Oncolytic Adenovirus Complexes Coated with Lipids and Calcium Phosphate for Cancer Gene Therapy Oncolytic Adenovirus Complexes Coated with Lipids and Calcium Phosphate for Cancer Gene Therapy Jianhua Chen, Pei Gao, Sujing Yuan, Rongxin Li, Aimin Ni, Liang Chu, Li Ding, Ying Sun, Xin-Yuan Liu, Yourong

More information

Low levels of serum mir-99a is a predictor of poor prognosis in breast cancer

Low levels of serum mir-99a is a predictor of poor prognosis in breast cancer Low levels of serum mir-99a is a predictor of poor prognosis in breast cancer J. Li 1, Z.J. Song 2, Y.Y. Wang 1, Y. Yin 1, Y. Liu 1 and X. Nan 1 1 Tumor Research Department, Shaanxi Provincial Tumor Hospital,

More information

Long noncoding RNA CASC2 inhibits metastasis and epithelial to mesenchymal transition of lung adenocarcinoma via suppressing SOX4

Long noncoding RNA CASC2 inhibits metastasis and epithelial to mesenchymal transition of lung adenocarcinoma via suppressing SOX4 European Review for Medical and Pharmacological Sciences 2017; 21: 4584-4590 Long noncoding RNA CASC2 inhibits metastasis and epithelial to mesenchymal transition of lung adenocarcinoma via suppressing

More information

CH Cho *, J Yu, WKK Wu 1,2

CH Cho *, J Yu, WKK Wu 1,2 RESEARCH FUND FOR THE CONTROL OF INFECTIOUS DISEASES Identification of pathogenic micrornas in Helicobacter pylori-associated gastric cancer using a combined approach of animal study and clinical sample

More information

Downregulation of serum mir-17 and mir-106b levels in gastric cancer and benign gastric diseases

Downregulation of serum mir-17 and mir-106b levels in gastric cancer and benign gastric diseases Brief Communication Downregulation of serum mir-17 and mir-106b levels in gastric cancer and benign gastric diseases Qinghai Zeng 1 *, Cuihong Jin 2 *, Wenhang Chen 2, Fang Xia 3, Qi Wang 3, Fan Fan 4,

More information

Supplementary Information POLO-LIKE KINASE 1 FACILITATES LOSS OF PTEN-INDUCED PROSTATE CANCER FORMATION

Supplementary Information POLO-LIKE KINASE 1 FACILITATES LOSS OF PTEN-INDUCED PROSTATE CANCER FORMATION Supplementary Information POLO-LIKE KINASE 1 FACILITATES LOSS OF PTEN-INDUCED PROSTATE CANCER FORMATION X. Shawn Liu 1, 3, Bing Song 2, 3, Bennett D. Elzey 3, 4, Timothy L. Ratliff 3, 4, Stephen F. Konieczny

More information

Original Article mir-338-3p inhibits the proliferation and migration of gastric cancer cells by targeting ADAM17

Original Article mir-338-3p inhibits the proliferation and migration of gastric cancer cells by targeting ADAM17 Int J Clin Exp Pathol 2015;8(9):10922-10928 www.ijcep.com /ISSN:1936-2625/IJCEP0011715 Original Article mir-338-3p inhibits the proliferation and migration of gastric cancer cells by targeting ADAM17 Jiang-Tao

More information

microrna-200b and microrna-200c promote colorectal cancer cell proliferation via

microrna-200b and microrna-200c promote colorectal cancer cell proliferation via Supplementary Materials microrna-200b and microrna-200c promote colorectal cancer cell proliferation via targeting the reversion-inducing cysteine-rich protein with Kazal motifs Supplementary Table 1.

More information

Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation

Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation J. Du 1, Z.H. Tao 2, J. Li 2, Y.K. Liu 3 and L. Gan 2 1 Department of Chemistry,

More information

LncRNA TUG1 promoted KIAA1199 expression via mir-600 to accelerate cell metastasis and epithelial-mesenchymal transition in colorectal cancer

LncRNA TUG1 promoted KIAA1199 expression via mir-600 to accelerate cell metastasis and epithelial-mesenchymal transition in colorectal cancer Sun et al. Journal of Experimental & Clinical Cancer Research (2018) 37:106 https://doi.org/10.1186/s13046-018-0771-x RESEARCH Open Access LncRNA TUG1 promoted KIAA1199 expression via mir-600 to accelerate

More information

Circular RNA functions as an oncogene through direct binding to mir p and mir-615-5p in non-small cell lung cancer

Circular RNA functions as an oncogene through direct binding to mir p and mir-615-5p in non-small cell lung cancer Chen et al. Molecular Cancer (2019) 18:13 https://doi.org/10.1186/s12943-019-0943-0 LETTER TO THE EDITOR Circular RNA 100146 functions as an oncogene through direct binding to mir- 361-3p and mir-615-5p

More information

The 16th KJC Bioinformatics Symposium Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis

The 16th KJC Bioinformatics Symposium Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis The 16th KJC Bioinformatics Symposium Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis Tieliu Shi tlshi@bio.ecnu.edu.cn The Center for bioinformatics

More information

Long non coding RNA GAS5 suppresses pancreatic cancer metastasis through modulating mir 32 5p/PTEN axis

Long non coding RNA GAS5 suppresses pancreatic cancer metastasis through modulating mir 32 5p/PTEN axis https://doi.org/10.1186/s13578-017-0192-0 Cell & Bioscience RESEARCH Open Access Long non coding RNA GAS5 suppresses pancreatic cancer metastasis through modulating mir 32 5p/PTEN axis Zhi Qiang Gao *,

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2607 Figure S1 Elf5 loss promotes EMT in mammary epithelium while Elf5 overexpression inhibits TGFβ induced EMT. (a, c) Different confocal slices through the Z stack image. (b, d) 3D rendering

More information

Overexpression of long-noncoding RNA ZFAS1 decreases survival in human NSCLC patients

Overexpression of long-noncoding RNA ZFAS1 decreases survival in human NSCLC patients European Review for Medical and Pharmacological Sciences 2016; 20: 5126-5131 Overexpression of long-noncoding RNA ZFAS1 decreases survival in human NSCLC patients F.-M. TIAN 1, F.-Q. MENG 2, X.-B. WANG

More information

Functional characterisation of hepatitis B viral X protein/microrna-21 interaction in HBVassociated hepatocellular carcinoma

Functional characterisation of hepatitis B viral X protein/microrna-21 interaction in HBVassociated hepatocellular carcinoma RESEARCH FUND FOR THE CONTROL OF INFECTIOUS DISEASES Functional characterisation of hepatitis B viral X protein/microrna-21 interaction in HBVassociated hepatocellular carcinoma CH Li, SC Chow, DL Yin,

More information

Lentiviral Delivery of Combinatorial mirna Expression Constructs Provides Efficient Target Gene Repression.

Lentiviral Delivery of Combinatorial mirna Expression Constructs Provides Efficient Target Gene Repression. Supplementary Figure 1 Lentiviral Delivery of Combinatorial mirna Expression Constructs Provides Efficient Target Gene Repression. a, Design for lentiviral combinatorial mirna expression and sensor constructs.

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:.38/nature8975 SUPPLEMENTAL TEXT Unique association of HOTAIR with patient outcome To determine whether the expression of other HOX lincrnas in addition to HOTAIR can predict patient outcome, we measured

More information

Mir-595 is a significant indicator of poor patient prognosis in epithelial ovarian cancer

Mir-595 is a significant indicator of poor patient prognosis in epithelial ovarian cancer European Review for Medical and Pharmacological Sciences 2017; 21: 4278-4282 Mir-595 is a significant indicator of poor patient prognosis in epithelial ovarian cancer Q.-H. ZHOU 1, Y.-M. ZHAO 2, L.-L.

More information

Advances in Computer Science Research, volume 59 7th International Conference on Education, Management, Computer and Medicine (EMCM 2016)

Advances in Computer Science Research, volume 59 7th International Conference on Education, Management, Computer and Medicine (EMCM 2016) 7th International Conference on Education, Management, Computer and Medicine (EMCM 2016) Expression of Beta-Adrenergic Receptor in Glioma LN229 Cells and Its Effect on Cell Proliferation Ping Wang1, Qingluan

More information

Acute myocardial infarction (MI) on initial presentation was diagnosed if there was 20 minutes

Acute myocardial infarction (MI) on initial presentation was diagnosed if there was 20 minutes SUPPLEMENTAL MATERIAL Supplemental Methods Diagnosis for acute myocardial infarction Acute myocardial infarction (MI) on initial presentation was diagnosed if there was 20 minutes or more of chest pain

More information

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods SUPPLEMENTARY INFORMATION SUMO1 modification of PTEN regulates tumorigenesis by controlling its association with the plasma membrane Jian Huang 1,2#, Jie Yan 1,2#, Jian Zhang 3#, Shiguo Zhu 1, Yanli Wang

More information

Supplementary Figures

Supplementary Figures Supplementary Figures Supplementary Figure 1. Confirmation of Dnmt1 conditional knockout out mice. a, Representative images of sorted stem (Lin - CD49f high CD24 + ), luminal (Lin - CD49f low CD24 + )

More information

Supplementary information

Supplementary information Supplementary information Human Cytomegalovirus MicroRNA mir-us4-1 Inhibits CD8 + T Cell Response by Targeting ERAP1 Sungchul Kim, Sanghyun Lee, Jinwook Shin, Youngkyun Kim, Irini Evnouchidou, Donghyun

More information

The pro-metastasis effect of circanks1b in breast cancer

The pro-metastasis effect of circanks1b in breast cancer Zeng et al. Molecular Cancer (2018) 17:160 https://doi.org/10.1186/s12943-018-0914-x RESEARCH Open Access The pro-metastasis effect of circanks1b in breast cancer Kaixuan Zeng 1,2, Bangshun He 1, Burton

More information

CircFAT1 sponges mir-375 to promote the expression of Yes-associated protein 1 in osteosarcoma cells

CircFAT1 sponges mir-375 to promote the expression of Yes-associated protein 1 in osteosarcoma cells Liu et al. Molecular Cancer (2018) 17:170 https://doi.org/10.1186/s12943-018-0917-7 RESEARCH Open Access CircFAT1 sponges mir-375 to promote the expression of Yes-associated protein 1 in osteosarcoma cells

More information

LncRNA AWPPH promotes the growth of triple-negative breast cancer by. up-regulating frizzled homolog 7 (FZD7)

LncRNA AWPPH promotes the growth of triple-negative breast cancer by. up-regulating frizzled homolog 7 (FZD7) Bioscience Reports: this is an Accepted Manuscript, not the final Version of Record. You are encouraged to use the Version of Record that, when published, will replace this version. The most up-to-date

More information

Expression of long non-coding RNA linc-itgb1 in breast cancer and its influence on prognosis and survival

Expression of long non-coding RNA linc-itgb1 in breast cancer and its influence on prognosis and survival European Review for Medical and Pharmacological Sciences 2017; 21: 3397-3401 Expression of long non-coding RNA linc-itgb1 in breast cancer and its influence on prognosis and survival W.-X. LI 1, R.-L.

More information

CONTRACTING ORGANIZATION: University of Southern California Los Angeles, CA 90033

CONTRACTING ORGANIZATION: University of Southern California Los Angeles, CA 90033 AD Award Number: W81XWH-07-01-0264 TITLE: Function of Klotho and is MicroRNA in Prostate Cancer and Aging PRINCIPAL INVESTIGATOR: Shao-Yao Ying, Ph.D. CONTRACTING ORGANIZATION: University of Southern California

More information

Impact of hyper-o-glcnacylation on apoptosis and NF-κB activity SUPPLEMENTARY METHODS

Impact of hyper-o-glcnacylation on apoptosis and NF-κB activity SUPPLEMENTARY METHODS SUPPLEMENTARY METHODS 3D culture and cell proliferation- MiaPaCa-2 cell culture in 3D was performed as described previously (1). Briefly, 8-well glass chamber slides were evenly coated with 50 µl/well

More information

mir-542-3p targets sphingosine-1-phosphate receptor 1 and regulates cell proliferation and invasion of breast cancer cells

mir-542-3p targets sphingosine-1-phosphate receptor 1 and regulates cell proliferation and invasion of breast cancer cells European Review for Medical and Pharmacological Sciences 2017; 21: 108-114 mir-542-3p targets sphingosine-1-phosphate receptor 1 and regulates cell proliferation and invasion of breast cancer cells H.-X.

More information

Original Article Tissue expression level of lncrna UCA1 is a prognostic biomarker for colorectal cancer

Original Article Tissue expression level of lncrna UCA1 is a prognostic biomarker for colorectal cancer Int J Clin Exp Pathol 2016;9(4):4241-4246 www.ijcep.com /ISSN:1936-2625/IJCEP0012296 Original Article Tissue expression level of lncrna UCA1 is a prognostic biomarker for colorectal cancer Hong Jiang,

More information

Supplementary Information and Figure legends

Supplementary Information and Figure legends Supplementary Information and Figure legends Table S1. Primers for quantitative RT-PCR Target Sequence (5 -> 3 ) Target Sequence (5 -> 3 ) DAB2IP F:TGGACGATGTGCTCTATGCC R:GGATGGTGATGGTTTGGTAG Snail F:CCTCCCTGTCAGATGAGGAC

More information

Islet viability assay and Glucose Stimulated Insulin Secretion assay RT-PCR and Western Blot

Islet viability assay and Glucose Stimulated Insulin Secretion assay RT-PCR and Western Blot Islet viability assay and Glucose Stimulated Insulin Secretion assay Islet cell viability was determined by colorimetric (3-(4,5-dimethylthiazol-2-yl)-2,5- diphenyltetrazolium bromide assay using CellTiter

More information

Decreased expression of mir-490-3p in osteosarcoma and its clinical significance

Decreased expression of mir-490-3p in osteosarcoma and its clinical significance European Review for Medical and Pharmacological Sciences Decreased expression of mir-490-3p in osteosarcoma and its clinical significance B. TANG, C. LIU, Q.-M. ZHANG, M. NI Department of Orthopedics,

More information

Supplemental Information

Supplemental Information Supplemental Information Tobacco-specific Carcinogen Induces DNA Methyltransferases 1 Accumulation through AKT/GSK3β/βTrCP/hnRNP-U in Mice and Lung Cancer patients Ruo-Kai Lin, 1 Yi-Shuan Hsieh, 2 Pinpin

More information

Knockdown of Long Noncoding RNA LUCAT1 Inhibits Cell Viability and Invasion by Regulating mir-375 in Glioma

Knockdown of Long Noncoding RNA LUCAT1 Inhibits Cell Viability and Invasion by Regulating mir-375 in Glioma Oncology Research, Vol. 26, pp. 307 313 0965-0407/18 $90.00 +.00 Printed in the USA. All rights reserved. DOI: https://doi.org/10.3727/096504017x15088061795756 Copyright Ó 2018 Cognizant, LLC. E-ISSN 1555-3906

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI:.38/ncb3399 a b c d FSP DAPI 5mm mm 5mm 5mm e Correspond to melanoma in-situ Figure a DCT FSP- f MITF mm mm MlanaA melanoma in-situ DCT 5mm FSP- mm mm mm mm mm g melanoma in-situ MITF MlanaA mm mm

More information

Supplemental information

Supplemental information Carcinoemryonic antigen-related cell adhesion molecule 6 (CEACAM6) promotes EGF receptor signaling of oral squamous cell carcinoma metastasis via the complex N-glycosylation y Chiang et al. Supplemental

More information

CONTRACTING ORGANIZATION: University of Mississippi Medical Center Jackson, MS 39216

CONTRACTING ORGANIZATION: University of Mississippi Medical Center Jackson, MS 39216 AD Award Number: W81XWH-12-1-0201 TITLE: Role of long non-coding RNAs in prostate cancer PRINCIPAL INVESTIGATOR: Yin-Yuan Mo CONTRACTING ORGANIZATION: University of Mississippi Medical Center Jackson,

More information

Supplementary Fig. 1: ATM is phosphorylated in HER2 breast cancer cell lines. (A) ATM is phosphorylated in SKBR3 cells depending on ATM and HER2

Supplementary Fig. 1: ATM is phosphorylated in HER2 breast cancer cell lines. (A) ATM is phosphorylated in SKBR3 cells depending on ATM and HER2 Supplementary Fig. 1: ATM is phosphorylated in HER2 breast cancer cell lines. (A) ATM is phosphorylated in SKBR3 cells depending on ATM and HER2 activity. Upper panel: Representative histograms for FACS

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary Figure 1. Effect of mir mimics and anti-mirs on DTPs a, Representative fluorescence microscopy images of GFP vector control or mir mimicexpressing parental and DTP

More information

York criteria, 6 RA patients and 10 age- and gender-matched healthy controls (HCs).

York criteria, 6 RA patients and 10 age- and gender-matched healthy controls (HCs). MATERIALS AND METHODS Study population Blood samples were obtained from 15 patients with AS fulfilling the modified New York criteria, 6 RA patients and 10 age- and gender-matched healthy controls (HCs).

More information

Original Article LncRNA HOXD-AS1 promotes melanoma cell proliferation and invasion by suppressing RUNX3 expression

Original Article LncRNA HOXD-AS1 promotes melanoma cell proliferation and invasion by suppressing RUNX3 expression Am J Cancer Res 2017;7(12):2526-2535 www.ajcr.us /ISSN:2156-6976/ajcr0064925 Original Article LncRNA HOXD-AS1 promotes melanoma cell proliferation and invasion by suppressing RUNX3 expression Hailin Zhang,

More information

Original Article Increased LincRNA ROR is association with poor prognosis for esophageal squamous cell carcinoma patients

Original Article Increased LincRNA ROR is association with poor prognosis for esophageal squamous cell carcinoma patients Int J Clin Exp Pathol 2017;10(4):4654-4660 www.ijcep.com /ISSN:1936-2625/IJCEP0048142 Original Article Increased LincRNA ROR is association with poor prognosis for esophageal squamous cell carcinoma patients

More information

Liang Yang 1, Qingxiang Gao 2, Xiaoxiong Wu 3, Feiling Feng 2* and Kaiyun Xu 4*

Liang Yang 1, Qingxiang Gao 2, Xiaoxiong Wu 3, Feiling Feng 2* and Kaiyun Xu 4* Yang et al. Journal of Experimental & Clinical Cancer Research (2018) 37:186 https://doi.org/10.1186/s13046-018-0847-7 RESEARCH Long noncoding RNA HEGBC promotes tumorigenesis and metastasis of gallbladder

More information

MicroRNA and Male Infertility: A Potential for Diagnosis

MicroRNA and Male Infertility: A Potential for Diagnosis Review Article MicroRNA and Male Infertility: A Potential for Diagnosis * Abstract MicroRNAs (mirnas) are small non-coding single stranded RNA molecules that are physiologically produced in eukaryotic

More information

95% CI: , P=0.037).

95% CI: , P=0.037). Biomedical Research 2017; 28 (21): 9248-9252 Reduced expression level of mir-205 predicts poor prognosis in Qiang Yang 1*#, Peng Sun 2#, Haotian Feng 1, Xin Li 1, Jianmin Li 1 1 Department of Orthopedics,

More information

Up-regulation of long non-coding RNA BCAR4 predicts a poor prognosis in patients with osteosarcoma, and promotes cell invasion and metastasis

Up-regulation of long non-coding RNA BCAR4 predicts a poor prognosis in patients with osteosarcoma, and promotes cell invasion and metastasis European Review for Medical and Pharmacological Sciences 2016; 20: 4445-4451 Up-regulation of long non-coding RNA BCAR4 predicts a poor prognosis in patients with osteosarcoma, and promotes cell invasion

More information

Long non-coding RNA TUSC7 expression is independently predictive of outcome in glioma

Long non-coding RNA TUSC7 expression is independently predictive of outcome in glioma European Review for Medical and Pharmacological Sciences 2017; 21: 3605-3610 Long non-coding RNA TUSC7 expression is independently predictive of outcome in glioma X.-L. MA 1, W.-D. ZHU 2, L.-X. TIAN 2,

More information

File Name: Supplementary Information Description: Supplementary Figures and Supplementary Tables. File Name: Peer Review File Description:

File Name: Supplementary Information Description: Supplementary Figures and Supplementary Tables. File Name: Peer Review File Description: File Name: Supplementary Information Description: Supplementary Figures and Supplementary Tables File Name: Peer Review File Description: Primer Name Sequence (5'-3') AT ( C) RT-PCR USP21 F 5'-TTCCCATGGCTCCTTCCACATGAT-3'

More information

Expression of lncrna TCONS_ in hepatocellular carcinoma and its influence on prognosis and survival

Expression of lncrna TCONS_ in hepatocellular carcinoma and its influence on prognosis and survival European Review for Medical and Pharmacological Sciences 2017; 21: 5655-5660 Expression of lncrna TCONS_00027978 in hepatocellular carcinoma and its influence on prognosis and survival Q. CHEN 1, G.-D.

More information

p.r623c p.p976l p.d2847fs p.t2671 p.d2847fs p.r2922w p.r2370h p.c1201y p.a868v p.s952* RING_C BP PHD Cbp HAT_KAT11

p.r623c p.p976l p.d2847fs p.t2671 p.d2847fs p.r2922w p.r2370h p.c1201y p.a868v p.s952* RING_C BP PHD Cbp HAT_KAT11 ARID2 p.r623c KMT2D p.v650fs p.p976l p.r2922w p.l1212r p.d1400h DNA binding RFX DNA binding Zinc finger KMT2C p.a51s p.d372v p.c1103* p.d2847fs p.t2671 p.d2847fs p.r4586h PHD/ RING DHHC/ PHD PHD FYR N

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/1171320/dc1 Supporting Online Material for A Frazzled/DCC-Dependent Transcriptional Switch Regulates Midline Axon Guidance Long Yang, David S. Garbe, Greg J. Bashaw*

More information

Part-4. Cell cycle regulatory protein 5 (Cdk5) A novel target of ERK in Carb induced cell death

Part-4. Cell cycle regulatory protein 5 (Cdk5) A novel target of ERK in Carb induced cell death Part-4 Cell cycle regulatory protein 5 (Cdk5) A novel target of ERK in Carb induced cell death 95 1. Introduction The process of replicating DNA and dividing cells can be described as a series of coordinated

More information

Circ_ /PHDLA1 suppresses gastric cancer progression by sponging mir 101 3p.1

Circ_ /PHDLA1 suppresses gastric cancer progression by sponging mir 101 3p.1 https://doi.org/10.1186/s13578-018-0252-0 Cell & Bioscience RESEARCH Open Access Circ_0027599/PHDLA1 suppresses gastric cancer progression by sponging mir 101 3p.1 Liang Wang *, Jingyan Shen and Yushan

More information

mir-132 inhibits lung cancer cell migration and invasion by targeting SOX4

mir-132 inhibits lung cancer cell migration and invasion by targeting SOX4 Original Article inhibits lung cancer cell migration and invasion by targeting SOX4 Yang Li, Lingling Zu, Yuli Wang, Min Wang, Peirui Chen, Qinghua Zhou Tianjin Key Laboratory of Lung Cancer Metastasis

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature12215 Supplementary Figure 1. The effects of full and dissociated GR agonists in supporting BFU-E self-renewal divisions. BFU-Es were cultured in self-renewal medium with indicated GR

More information

Posttranscriptional upregulation of HER3 by HER2 mrna induces trastuzumab resistance in breast cancer

Posttranscriptional upregulation of HER3 by HER2 mrna induces trastuzumab resistance in breast cancer Li et al. Molecular Cancer (2018) 17:113 https://doi.org/10.1186/s12943-018-0862-5 RESEARCH Open Access Posttranscriptional upregulation of HER3 by HER2 mrna induces trastuzumab resistance in breast cancer

More information

Increased expression of the long non-coding RNA ANRIL promotes lung cancer cell metastasis and correlates with poor prognosis

Increased expression of the long non-coding RNA ANRIL promotes lung cancer cell metastasis and correlates with poor prognosis Lin et al. Diagnostic Pathology (2015) 10:14 DOI 10.1186/s13000-015-0247-7 RESEARCH Open Access Increased expression of the long non-coding RNA ANRIL promotes lung cancer cell metastasis and correlates

More information

Effect of lncrna LET on proliferation and invasion of osteosarcoma cells

Effect of lncrna LET on proliferation and invasion of osteosarcoma cells European Review for Medical and Pharmacological Sciences 2018; 22: 1609-1614 Effect of lncrna LET on proliferation and invasion of osteosarcoma cells G. KONG 1, X.-J. QI 2, J.-F. WANG 3 1 Department of

More information

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable

(a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable Supplementary Figure 1. Frameshift (FS) mutation in UVRAG. (a) Schematic diagram of the FS mutation of UVRAG in exon 8 containing the highly instable A 10 DNA repeat, generating a premature stop codon

More information