Protein Class/Name. Pathways. bat00250, bat00280, bat00410, bat00640, bat bat00270, bat00330, bat00410, bat00480
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1 Electronic Supplementary Material (ESI) for Analyst. This journal is The Royal Society of Chemistry 2017 Supplemental Table 1. Proteins Increased in Either Soil or Laboratory media Table 1A. Proteins Increased in Spores Produced on Soil Over Spores Produced on Laboratory Media quasi.fdr Protein ID Protein Class/Name Amino Acid Metabolism 2.97E-08 BAS aminobutyrate aminotransferase KEGG Pathways bat00250, bat00280, bat00410, bat00640, bat E-08 BAS0561 alanine dehydrogenase bat00250, bat E-10 BAS4521 alanine dehydrogenase bat00250, bat E-13 BAS5060 spermidine synthase 3.69E E E-32 BAS0228 BAS3022 BAS3023 bat00270, bat00330, bat00410, bat00480 Pathway Names or Function (if found in KEGG) Alanine, aspartate and glutamate metabolism, Valine, leucine and isoleucine degradation, beta-alanine metabolism, Propanoate metabolism, Butanoate metabolism Alanine, aspartate and glutamate metabolism, Taurine and hypotaurine metabolism Alanine, aspartate and glutamate metabolism, Taurine and hypotaurine metabolism Cysteine and methionine metabolism, Arginine and proline metabolism, beta- Alanine metabolism, Glutathione metabolism homogentisate 1,2-dioxygenase, putative bat00350, bat00643 Tyrosine metabolism, Styrene degradation Membrane, Wall or Surface Proteins protein ABC-type lipoprotein export system, ATPase ABC-type antimicrobial peptide transport ABC transporter, permease protein, system, FtsX-like permease family, Defense putative mechanisms 2.68E-10 BAS0685 AcrB/AcrD/AcrF family transporter 8.30E-17 BAS0681 phosphate ABC transporter, phosphate-binding protein, putative ABC transporters Other Enzymes and Proteins 1.12E-10 BAS2122 azoreductase 1.21E-13 BAS1076 catalase 3.93E-07 BAS2816 catalase 2.69E-12 BAS4591 M42 family peptidase 9.93E-08 BAS3884 peptide deformylase 1.53E-10 BAS4071 phosphate butyryltransferase bat00650 phosphate transport system regulatory 8.18E-29 BAS4170 protein PhoU, putative purple acid phosphatase/fibronectin 8.25E-08 BAS0777 domain-containing protein 1.33E-10 BAS1763 xaa-pro aminopeptidase, putative 2.70E-11 BAS4191 GTP cyclohydrolase Fatty Acid Metabolism 1.96E-14 BAS0832 acyl-coa synthetase Glycolysis-Pyruvate metabolism- TCA cycle-oxidative phosphorylation 5.93E-08 BAS4068 dihydrolipoamide dehydrogenase bat00061, bat00071 bat00260, bat00280, bat00630 Butanoate metabolism (polyketide biosynthesis) Fatty acid biosynthesis, Fatty acid degradation (TCA cycle), Glycine, serine and threonine metabolism, Valine, leucine and isoleucine degradation, Pyruvate metabolism, Glyoxylate and dicarboxylate metabolism 1.08E-07 BAS1052 isocitrate lyase bat00630 Glyoxylate and dicarboxylate metabolism Nucleotide Metabolism 5.89E-07 BAS1003 endonuclease/exonuclease/phosphatas e family protein
2 1.02E-07 BAS0006 DNA gyrase subunit A Transcription and Protein translation 2.91E-06 BAS2027 isoleucyl-trna synthetase 5.23E-09 BAS0691 transcriptional activator TenA, putative rrf2 family protein - DNA-binding 1.69E-27 BAS4293 transcriptional regulator Sporulation-Germination Proteins 6.26E-14 BAS0047 regulatory protein SpoVG Vitamin metabolism 7.54E-10 BAS0696 glycine oxidase bat00730 Thiamine metabolism 1.99E-14 BAS0698 thiazole synthase bat00730 Thiamine metabolism Aminobenzoate degradation, Folate 5.39E-11 BAS4244 alkaline phosphatase bat00627, bat00790 biosynthesis Hypothetical Proteins 3.18E-14 BAS2513 hypothetical protein 2.12E-09 BAS3081 hypothetical protein 2.28E-10 BAS3861 hypothetical protein Table 1B. Proteins Increased in Spores from Laboratory Media Over Spores Produced in Soil quasi.fdr Protein ID Protein Class/Name KEGG Pathways Pathway Names or Function (if found in KEGG) Amino Acid Metabolism BAS isopropylmalate synthase asparagine synthetase, glutaminehydrolyzing 1.38E-20 BAS1625 asparagine synthetase, glutaminehydrolyzing 8.73E-15 BAS methyl-2-oxobutanoate 7.69E-16 BAS4067 dehydrogenase, alpha subunit 3-methyl-2-oxobutanoate 1.56E-20 BAS4066 dehydrogenase, beta subunit bat00290,, bat01210 bat00250, bat00250, bat00280, Valine, leucine and isoleucine biosynthesis, Pyruvate metabolism, 2-Oxocarboxylic acid metabolism Alanine, aspartate and glutamate metabolism Alanine, aspartate and glutamate metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine degradation 1.22E-12 BAS4269 O-acetylserine lyase bat00270 Cysteine and methionine metabolism 3.07E-13 BAS4271 hypothetical protein - 100% homology to SAM-dependent methyltransferase bat00270 Cysteine and methionine metabolism 1.31E-20 BAS4879 proline dehydrogenase family protein bat00330, Arginine and proline metabolism bat00290, bat00770, bat01210 Valine, leucine and isoleucine biosynthesis, Pantothenate and CoA biosynthesis, 2- Oxocarboxylic acid metabolism 1.13E-06 BAS1310 ketol-acid reductoisomerase D-3-phosphoglycerate Glycine, serine and threonine metabolism, 5.10E-09 BAS3078 dehydrogenase, putative bat00260, bat00680 Methane metabolism Membrane, Wall or Surface Proteins ABC transporter, 100% homology to BAS3372 hypothetical protein phosphonate ABC transporter permease ATP-binding cassette domain of elongation 9.20E-11 BAS0248 protein factor E-06 BAS3140 protein ABC-type Na+ transport system 2.22E-06 BAS4723 protein ABC-type lipoprotein export system amino acid ABC transporter, ATPbinding 3.34E-06 BAS0354 protein ABC transporter, 100% homology to heme 3.87E-17 BAS5281 protein ABC transporter ATP-binding protein
3 2.45E E E E-09 BAS3642 BAS4334 BAS3140 BAS1102 sugar protein protein ABC-type lipoprotein export system protein ABC-type Na+ transport system oligopeptide ABC transporter, permease protein 1.63E-18 BAS5128 rod shape-determining protein Mbl 7.75E-06 BAS2964 adhesion lipoprotein 2.42E-15 BAS5038 preprotein translocase subunit SecA 1.36E-07 BAS0838 preprotein translocase subunit SecA 1.63E-18 BAS5128 rod shape-determining protein Mbl 7.75E-06 BAS2964 adhesion lipoprotein 2.42E-15 BAS5038 preprotein translocase subunit SecA 1.36E-07 BAS0838 preprotein translocase subunit SecA 1.60E-12 BAS5137 UDP-N-acetylglucosamine 1- carboxyvinyltransferase 1.67E-22 BAS0525 SPFH domain-containing protein/band 7 family protein - Flotillin or reggie family 1.86E-06 BAS1576 TPR/glycosyl transferase domaincontaining protein - Glycosyltransferase involved in cell wall biosynthesis hypothetical protein - 99% homology 9.76E-11 BAS1255 to B. thuringiensis putrescine importer Other Enzymes and Proteins 7.15E-08 BAS1263 acetyltransferase 7.71E-09 BAS2680 acetyltransferase 4.07E-11 BAS2977 chaperone protein hscc fumarylacetoacetate hydrolase family 6.37E-05 BAS0227 protein 1.31E-17 BAS1936 glycosyl transferase family protein 4.24E-11 BAS3326 glyoxalase family protein GTP-dependent nucleic acid-binding 8.46E-18 BAS5328 protein EngD 4.39E-11 BAS3885 HAD superfamily hydrolase 6.79E-07 BAS2017 HEAT repeat-containing PBS lyase 7.30E-17 BAS2273 hypothetical protein - 100% homology to acetyltransferase gb AIK E-20 BAS2829 hypothetical protein - Abhydrolase_5 1.83E-14 BAS2803 hypothetical protein - oribabke magnesium chelatase 3.83E-29 BAS2554 hypothetical protein - plasmid segregation protein ParM 6.97E-17 BAS0518 hypothetical protein, putative serine protein kinase 9.50E-11 BAS4005 lols protein - Predicted oxidoreductase - related to arylalcohol dehydrogenase 6.88E-22 BAS0147 mrp protein - ATP-binding protein involved in chromosome partitioning 3.34E-12 BAS2002 N-acetyltransferase family protein NorQ protein, putative - MoxR-like 7.31E-08 BAS0591 ATPase
4 1.32E E E E-11 BAS3556 BAS3863 BAS4447 BAS0241 phage integrase family site specific recombinase PhoH family protein - Predicted ribonuclease YlaK recombination and DNA strand exchange inhibitor protein, Endonuclease MutS2 S1 RNA-binding domain-containing protein - ribonuclease with RNase H fold 1.91E-16 BAS5300 superoxide dismutase, Mn 1.40E-10 BAS0390 tellurite resistance protein, putative 1.01E-15 BAS4936 tyrosyl-trna synthetase Fatty Acid Metabolism 1.28E-18 BAS1019 long-chain-fatty-acid-coa ligase bat00061, bat00071 Fatty acid biosynthesis, Fatty acid degredation 2.70E-19 BAS4840 lipoyl synthase bat00785 Lipoic acid metabolism 3.10E-18 BAS4876 acetyl-coa acetyltransferase 1.40E-12 BAS1840 acyl-coa synthetase 5.21E-14 BAS3703 acyl-carrier-protein S- malonyltransferase 1.10E-09 BAS ketoacyl-(acyl-carrier-protein) reductase Glycolysis-Pyruvate metabolism- TCA cycle-oxidative phosphorylation 1.42E-27 BAS0481 formate acetyltransferase bat00071, bat00280, bat00281, bat00362, bat00592, bat00642, bat00061, bat00780 bat00640 bat00650 Fatty acid degradation, Valine, leucine and isoleucine degradation, Geraniol degradation, Benzoate degradation, alpha-linolenic acid metabolism, Ethylbenzene degradation, Biosynthesis of secondary metabolites Fatty acid biosynthesis, Biotin metabolism Pyruvate metabolism, Propanoate metabolism, Butanoate metabolism 5.33E-35 BAS0669 quinol oxidase, subunit II bat00190 Oxidative phosphorylation 2.07E-16 BAS0668 quinol oxidase, subunit I bat00190 Oxidative phosphorylation metallo-beta-lactamase/rhodaneselike 9.62E-16 BAS2361 domain-containing protein bat00620 Pyruvate metabolism BAS4593 metallo-beta-lactamase family protein 1.66E-18 BAS2376 acetoacetyl-coa synthase, putative 1.15E-05 BAS2586 branched-chain alpha-keto acid dehydrogenase subunit E2 2.11E-15 BAS2762 malate:quinone oxidoreductase acetyl-coa hydrolase/transferase 9.25E-12 BAS1726 family protein aldo/keto reductase family 3.00E-12 BAS0197 oxidoreductase BAS2640 aldehyde dehydrogenase bat00010, bat00640, bat00680, bat00020, bat00020, bat00650 bat00010, bat00040, bat00071, bat00053, bat00350, bat00625, bat00280, bat00310, bat00330, bat00340, bat00380, bat00410, bat00561, bat00620 Glycolysis / Gluconeogenesis, Pyruvate metabolism, Propanoate metabolism, Methane metabolism, Biosynthesis of secondary metabolites (TCA cycle), Pyruvate metabolism, Biosynthesis of secondary metabolites Citrate cycle (TCA cycle), Pyruvate metabolism, Biosynthesis of secondary metabolites Citrate cycle (TCA cycle), Pyruvate metabolism, Butanoate metabolism Glycolysis / Gluconeogenesis, Pentose and glucuronate interconversions, Ascorbate and aldarate metabolism, Fatty acid degradation, Valine, leucine and isoleucine degradation, Lysine degradation, Arginine and proline metabolism, Histidine metabolism, Tryptophan metabolism, beta-alanine metabolism, Glycerolipid metabolism, Pyruvate metabolism, Chloroalkane and chloroalkene degradation 1.25E-19 BAS2111 alcohol dehydrogenase bat00010, bat00071, Glycolysis / Gluconeogenesis, Fatty acid
5 bat00350, bat00625 bat00260, bat00280, bat00630 bat00020, bat00310 degradation, Tyrosine metabolism, Chloroalkane and chloroalkene degradation 8.54E-06 BAS0641 alcohol dehydrogenase, zinccontaining 5.94E-07 BAS oxoglutarate ferredoxin oxidoreductase subunit beta bat00020 Citrate cycle (TCA cycle) BAS isopropylmalate synthase bat00290, bat00620 Valine, leucine and isoleucine biosynthesis, Pyruvate metabolism (TCA cycle), Glycine, serine and threonine metabolism, Valine, leucine and isoleucine degradation, Pyruvate metabolism, Glyoxylate 9.78E-06 BAS2585 dihydrolipoamide dehydrogenase and dicarboxylate metabolism 5.31E-12 BAS1176 dihydrolipoamide succinyltransferase 4.57E-05 BAS4869 L-lactate dehydrogenase molybdopterin oxidoreductase family 1.30E-07 BAS0557 protein TPP-dependent acetoin 5.81E-05 BAS2588 dehydrogenase E1 alpha-subunit Nucleotide Metabolism Citrate cycle (TCA cycle), Lysine degradation 3.50E-08 BAS4773 gluconate 2-dehydrogenase bat00030 Pentose phosphate pathway bat00010, bat00270, bat00640 Propanoate metabolism bat00630, bat00680 bat00620 Glycolysis / Gluconeogenesis, Cysteine and methionine metabolism, Pyruvate metabolism, Glyoxylate and dicarboxylate metabolism, Methane metabolism (TCA cycle), Pyruvate metabolism 8.70E-06 BAS3398 anaerobic ribonucleoside triphosphate reductase bat00230, bat00240 Purine metabolism, Pyrimidine metabolism 1.75E-19 BAS4935 pyridine nucleotide-disulphide oxidoreductase bat00230, bat00240 Purine metabolism, Pyrimidine metabolism bat00230, 3.62E-05 BAS4482 DNA polymerase I bat00240 Purine metabolism, Pyrimidine metabolism 8.53E-16 BAS3676 uridylate kinase Transcription and Protein translation 5.18E-12 BAS S ribosomal protein S18 bat03010 Protein translation 1.01E-15 BAS4936 tyrosyl-trna synthetase bat00970 Protein translation 2.42E-15 BAS5038 preprotein translocase subunit SecA bat03060 Protein export 1.36E-07 BAS0838 preprotein translocase subunit SecA bat03060 Protein export 2.43E-08 BAS1014 LacI family sugar-binding transcriptional regulator 9.40E-08 BAS4013 LacI family sugar-binding transcriptional regulator 4.50E-17 BAS3683 trna (uracil-5-)-methyltransferase Gid 1.14E-10 BAS4291 trna-specific 2-thiouridylase MnmA 3.14E-07 BAS3670 prolyl-trna synthetase Sporulation-Germination Proteins 2.08E-11 BAS5185 stage 0 sporulation protein F 1.09E-08 BAS5332 stage 0 sporulation protein J 4.08E-07 BAS0731 stage V sporulation protein R 4.84E-09 BAS3654 dipicolinate synthase subunit A Vitamin metabolism 8.28E-13 BAS4023 biotin synthase bat00780 Biotin metabolism 4.39E-11 BAS4027 dithiobiotin synthetase bat00780 Biotin metabolism 3.84E-06 BAS4328 cysteine desulfurase bat00730 Thiamine metabolism 2.51E-12 BAS5266 pyridoxal kinase bat00750 Vitamin B6 metabolism Hypothetical Proteins
6 3.36E-11 BAS3810 hypothetical protein 4.93E-10 BAS3621 hypothetical protein 6.91E-07 BAS2158 hypothetical protein 2.21E-06 BAS1216 hypothetical protein 1.85E-13 BAS3590 hypothetical protein 4.92E-06 BAS3176 hypothetical protein 3.07E-13 BAS4271 hypothetical protein 4.85E-07 BAS4934 hypothetical protein 3.42E-07 BAS0915 hypothetical protein 2.59E-06 BAS0394 hypothetical protein 1.43E-07 BAS3307 hypothetical protein 7.39E-08 BAS1377 hypothetical protein 4.60E-06 BAS1927 hypothetical protein 3.26E-06 BAS0997 hypothetical protein 5.63E-06 BAS2950 hypothetical protein
Protein Class/Name. Pathways. bat00250, bat00280, bat bat00640, bat00650 bat00270, bat00330, bat00410, bat00480 bat00270, bat00330,
Electronic Supplementary Material (ESI) for Analyst. This journal is The Royal Society of Chemistry 2017 Supplemental Table 2. Proteins Increased in Either Blood or Horizon media Table 2A. Proteins Increased
Protein Class/Name KEGG Pathways
Electronic Supplementary Material (ESI) for Analyst. This journal is The Royal Society of Chemistry 2017 Supplemental Table 4. Proteins Increased in Either Soil medium at 37 o C and 25 o C Table 4A. Proteins
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