Characterization of the Kaposi s Sarcoma-Associated Herpesvirus K1 Signalosome

Size: px
Start display at page:

Download "Characterization of the Kaposi s Sarcoma-Associated Herpesvirus K1 Signalosome"

Transcription

1 JOURNAL OF VIROLOGY, Oct. 2005, p Vol. 79, No X/05/$ doi: /jvi Copyright 2005, American Society for Microbiology. All Rights Reserved. Characterization of the Kaposi s Sarcoma-Associated Herpesvirus K1 Signalosome Bok-Soo Lee, 1 Sun-Hwa Lee, 2 Pinghui Feng, 2 Heesoon Chang, 2 Nam-Hyuk Cho, 3 and Jae U. Jung 1 * Department of Microbiology and Immunology, Wonkwang University School of Medicine, Iksan City, Chonbuk, 1 and Department of Microbiology and Immunology, Seoul National University School of Medicine, Seoul, 3 Korea, and Department of Microbiology and Molecular Genetics and Division of Tumor Virology, New England Primate Research Center, Harvard Medical School, 1 Pine Hill Drive, Southborough, Massachusetts Received 21 March 2005/Accepted 8 July 2005 Kaposi s sarcoma (KS) is a multifocal angiogenic tumor and appears to be a hyperplastic disorder caused, in part, by local production of inflammatory cytokines. The K1 lymphocyte receptor-like protein of KSassociated herpesvirus (KSHV) efficiently transduces extracellular signals to elicit cellular activation events through its cytoplasmic immunoreceptor tyrosine-based activation motif (ITAM). To further delineate K1- mediated signal transduction, we purified K1 signaling complexes and identified its cellular components. Upon stimulation, the K1 ITAM was efficiently tyrosine phosphorylated and subsequently interacted with cellular Src homology 2 (SH2)-containing signaling proteins Lyn, Syk, p85, PLC 2, RasGAP, Vav, SH2 domain-containing protein tyrosine phosphatase 1/2, and Grab2 through its phosphorylated tyrosine residues. Mutational analysis demonstrated that each tyrosine residue of K1 ITAM contributed to the interactions with cellular signaling proteins in distinctive ways. Consequently, these interactions led to the marked augmentation of cellular signal transduction activity, evidenced by the increase of cellular tyrosine phosphorylation and intracellular calcium mobilization, the activation of NF-AT and AP-1 transcription factor activities, and the production of inflammatory cytokines. These results demonstrate that KSHV K1 effectively recruits a set of cellular SH2-containing signaling molecules to form the K1 signalosome, which elicits downstream signal transduction and induces inflammatory cytokine production. Kaposi s sarcoma (KS) is a multifocal angiogenic tumor consisting of characteristic spindle cells and infiltrating leukocytes (38). KS occurs in several epidemiologically distinct forms and is the most common AIDS-associated tumor (2, 4, 41, 44). Unlike most cancers, KS does not appear to be the result of clonal expansion of a transformed cell. Instead, it appears to be a hyperplastic disorder caused, in part, by local production of inflammatory cytokines such as interleukin-1 (IL-1), IL-6, gamma interferon, tumor necrosis factor alpha, and growth factors such as basic fibroblast growth factor and vascular endothelial growth factor (VEGF) (13 16). This is supported by the fact that infiltration of inflammatory cells, including CD8 T cells, monocytes, macrophages, and dendritic cells, precedes transformation of the spindle-shaped endothelial cells (3, 23, 43). Infiltrating cells systematically produce inflammatory cytokines that are likely responsible for activating vessels and endothelial cells, increasing adhesiveness with extravasation, and recruiting lymphocytes and monocytes (12, 14). Based on strong epidemiological and histopathological evidence, KS-associated herpesvirus (KSHV), also called human herpesvirus 8, is thought to be an etiologic agent of KS (9). KSHV has been consistently identified in KS tumors from human immunodeficiency virus-positive and human immunodeficiency virus-negative patients (4, 5, 37). KSHV has also been identified in primary effusion lymphoma (PEL) and an * Corresponding author. Mailing address: Tumor Virology Division, New England Primate Research Center, Harvard Medical School, 1 Pine Hill Drive, Southborough, MA Phone: (508) Fax: (508) jae_jung@hms.harvard.edu. immunoblast variant of multicentric Castleman s disease (26), which are of B-cell origin (4, 5, 45). The genomic sequence classifies KSHV as a gamma-2 herpesvirus that is closely related to herpesvirus saimiri (41, 46) and rhesus monkey rhadinovirus (1, 10, 48). At a position equivalent to the saimiri transformation protein (STP) of herpesvirus saimiri (22) and latent membrane protein 1 (LMP1) of Epstein-Barr virus (11), KSHV contains a distinct open reading frame called K1 (28, 35, 53). The K1 gene is expressed at a low level in PEL, and its expression is significantly induced during the lytic phase of the viral life cycle (28). The K1 protein is predicted to have a signal peptide sequence at the amino terminus, an extracellular domain, a transmembrane domain, and a short cytoplasmic tail at the carboxyl terminus (34). The predicted extracellular domain of the K1 protein demonstrates regional homology with the variable region of the lambda chain of the immunoglobulin (Ig) light chain (34). Besides its regional homology with the Ig family, the extracellular domain of K1 also contains conserved regions (C1 and C2) and variable regions (V1 and V2). Particularly, two 40-amino-acid blocks at the extracellular V1 and V2 domains of K1 show as much as 85% divergence at the nucleotide level and 60% divergence at the amino acid level (7, 20, 27, 53). In addition, the amino-terminal region of K1 specifically interacts with the chains of B-cell antigen receptor (BCR) complexes, and this interaction inhibits the intracellular transport of BCR, resulting in downregulation of BCR surface expression (31). Furthermore, similar to Ig and Ig, the cytoplasmic region of K1 contains a functional immunoreceptor tyrosinebased activation motif (ITAM), which transduces extracellular 12173

2 12174 LEE ET AL. J. VIROL. signals to elicit cellular activation events (30, 34). Recent reports have also shown that ITAM-dependent signaling by K1 modestly augments lytic reactivation in KSHV-infected PEL cells (29), whereas it strongly suppresses chemically induced lytic reactivation (33). These indicate that K1 has multiple roles in cellular signal transduction and viral lytic reactivation. Despite extensive studies of K1 signal transduction, its cellular targets have not been well characterized. Here we demonstrate that K1 protein efficiently interacts with a number of cellular Src homology 2 (SH2)-containing signaling proteins through its ITAM and that each tyrosine residue of K1 ITAM targets different cellular SH2-containing proteins. K1 interactions with cellular signaling proteins consequently augmented cellular signal transduction activity, including tyrosine phosphorylation, intracellular calcium mobilization, transcription factor activation, and inflammatory cytokine production. These results indicate that KSHV K1 assembles its signalosome upon stimulation, which effectively elicits downstream signal transduction and ultimately induces inflammatory cytokine production. MATERIALS AND METHODS Cell culture and transfection. Cultures of 293T cells were grown in Dulbecco s modified Eagle s medium P supplemented with 10% fetal calf serum. BJAB and DT40 cells were grown in RPMI 1640 medium supplemented with 10% fetal calf serum. Fugene 6 (Roche, Indianapolis, IN) or calcium phosphate (Clontech, Palo Alto, CA) was used for transient expression of K1 in 293T cells. Electroporation at 260 V and 975 F was used for transient expression of K1 in BJAB and DT40 cells. A stable BJAB cell line expressing K1 was selected and maintained by the presence of G418 (1 mg/ml). Antibodies and reagents. Monoclonal anti-k1 antibody was generated against the extracellular glycosylated K1 protein purified from mammalian cells as described previously (32). The polyclonal antibodies used in this study were anti- Lyn, anti-syk, anti-plc 2, anti-p85, anti-sh2 domain-containing protein tyrosine phosphatase 1 (SH-PTP1), anti-sh-ptp2, anti-grb2, and anti-vav1/2 (Santa Cruz Biotechnology, Santa Cruz, CA). Antiphosphotyrosine antibody 4G10 was purchased from UBI (Lake Placid, NY), phosphatase inhibitor cocktail and sodium vanadate were purchased from Sigma Chemicals (St. Louis, MO), and wortmannin, herbimycin, and piceatannol were purchased from Calbiochem (San Diego, CA). Plasmid construction. K1 mutants were generated by PCR-based site-directed mutagenesis. DNA fragments containing full-length K1 were subcloned into vector pdef3 for mammalian expression. DNA fragments containing the K1 cytoplasmic region (amino acids 251 to 289) were PCR amplified and subcloned in frame into bacterial glutathione S-transferase (GST) vector pgex4t-1. Each K1 construct was completely sequenced to verify the presence of the mutation and the absence of any other changes. GST pull-down assays. GST fusion proteins were purified from either Escherichia coli strain Top10 or TKX1, which contains a mammalian elk tyrosine kinase expression vector (Stratagene, La Jolla, CA). Jurkat T-cell lysates were incubated with glutathione beads containing GST fusion protein in binding buffer (20 mm HEPES [ph 7.4], 100 mm NaCl, 1% NP-40, protease inhibitors) at 4 C for 2 h. Glutathione beads were then washed four times with binding buffer, and the proteins associated with the beads were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and subjected to immunoblot assay using a Fuji phosphorimager (BAS-1500; Fuji Film Co., Tokyo, Japan). Protein purification and mass spectrometry. BJAB cells were labeled with [ 35 S]methionine-cysteine for 16 h, and cell lysates were used for GST pull down with tyrosine-phosphorylated and nonphosphorylated GST/K1-C protein. To identify K1-binding proteins, 10 liters of BJAB B cells was lysed with lysis buffer (20 mm HEPES [ph 7.4], 100 mm NaCl, 1% NP-40) containing protease and phosphatase inhibitors. After centrifugation, the supernatant was filtered through a m-pore-size syringe filter and precleared by mixing with GSTbound glutathione beads twice. Precleared lysates were mixed with glutathione beads containing GST, GST/K1-C fusion protein, or tyrosine-phosphorylated GST/K1-C(P) fusion protein for 4 h. Afterwards, the beads were extensively washed with lysis buffer. Proteins bound to the beads were eluted, separated by SDS-PAGE, and subjected to peptide sequencing at the Harvard mass spectrometry facility. Cell stimulation, immunoprecipitation, and immunoblotting. BJAB cells ( ) expressing wild-type (WT) K1 or its mutant forms were stimulated with an anti-k1 antibody at 37 C for the indicated time. Stimulation was stopped by the addition of an equal volume of ice-cold 2 1% NP-40 lysis buffer. Cell lysates were then precleared by rocking at 4 C for 1 to2hinthepresence of protein A/G agarose (Santa Cruz Biotechnology). Precleared cell lysates were incubated with the relevant antibodies for 2 h, followed by protein A/G agarose for 2 h. Immunoprecipitates were separated by SDS-PAGE and transferred onto polyvinylidene difluoride membranes (Amersham Pharmacia Biotech, Chicago, IL). Membranes were reacted with appropriate antibodies in 5% skim milk phosphatebuffered saline (PBS) Tween 20 (or 3% bovine serum albumin PBS Tween 20 for phosphotyrosine blots). Protein was visualized with chemiluminescent detection reagents (Pierce, Rockford, IL) and detected by a Fuji phosphorimager. Calcium mobilization analysis. Cells ( ) were loaded with 1 M indo-1 in 200 l of RPMI complete medium for 30 min at 37 C, washed once with complete medium, resuspended in 1 ml of RPMI complete medium, and then put on ice until analyzed. Baseline calcium levels were established for 1 min prior to addition of the antibody. Cells were stimulated with 10 g/ml of anti-k1 2H1 antibody. Baseline absolute intracellular calcium levels were determined by using ionophore and EGTA. Data were collected and analyzed on a FACS Vantage (Becton Dickinson, Mountain View, CA). Flow cytometry analysis. Cells ( ) were washed with RPMI medium containing 10% fetal calf serum and incubated for 30 min with mouse monoclonal K1 antibodies, preimmunized mouse serum, or anti-flag antibody (Sigma, St. Louis, MO). Cells were then incubated for 20 min at 4 C with phycoerythrinconjugated anti-mouse antibodies (PharMingen, San Diego, CA). After washing, each sample was fixed with 2% paraformaldehyde solution, and fluorescenceactivated cell sorter analysis was performed with a FACScan (Becton Dickinson, Mountain View, CA). Reporter assay. Cells (10 7 ) were transfected with 2 g of pgk- -Gal plasmid, 10 g of luciferase reporter plasmid, and 20 g of or WT or mutant K1 plasmid. At 24 to 36 h posttransfection, cells were harvested and lysed in 200 l of reporter lysis buffer. A luciferase assay was carried out according to the manufacturer s instructions (Promega, Madison, WI) and measured by luminometer (Victor). Luciferase activity was normalized to -galactosidase activity and presented as n-fold induction compared with the control. Cytokine array. Cytokine production was performed by sandwich enzymelinked immunosorbent assay (ELISA) using human cytokine antibody arrays (Panomics, Redwood City, CA). According to the manufacturer s recommendation, cytokine antibody-coated membranes were incubated with blocking solution, followed by incubation with culture supernatants for 1 to 2 h. After extensive washings, membranes were incubated with streptavidin-conjugated anticytokine mixtures for 1 to 2 h and then reacted with horseradish peroxidaseconjugated avidin for 1 h. Cytokines bound to membranes were measured by chemiluminescence assay using a Fuji phosphorimager. Signal intensity was calculated by subtracting the background signal. RNA preparation and RNase protection assay (RPA). Cells were transfected with 20 g of K1 expression vector and harvested at 0, 6, 12, 24, and 36 h posttransfection. RNA was isolated from cells by conventional phenolchloroform extraction. The template was custom ordered from BD PharMingen based on cytokine array data. At each time point, 30 g of total RNA was hybridized to the 32 P-labeled RNA template at 90 C for 3 min and subsequently hybridized at 56 C for 16 h. RNase protection reactions were carried out using an RPA kit (BD PharMingen) according to the manufacturer s instructions. Following precipitation of the digested RNA, the samples were separated on 5% denaturing acrylamide gels. The gels were analyzed using a phosphorimager (BAS 2000; Fuji Photo Film Co., Tokyo, Japan). RESULTS Interaction of tyrosine-phosphorylated K1 with cellular SH2-containing proteins. To identify cellular proteins interacting with K1, a GST pull-down assay was performed using bacterial GST fusion proteins. Unphosphorylated GST/K1-C containing the cytoplasmic region of K1 was produced from the E. coli strain Top10, and tyrosine-phosphorylated GSTK1- C(P) was produced from E. coli strain TKX1, which contains the elk tyrosine kinase. The elk tyrosine kinase has broad

3 VOL. 79, 2005 KSHV K1 SIGNALOSOME FIG. 1. Identification of cellular proteins binding to the phosphorylated or nonphosphorylated cytoplasmic domain of K1. (A) K1-C binding protein purification and mass spectrometry analysis. GST and the unphosphorylated GST/K1-C and phosphorylated GST/K1- C(P) fusion proteins are shown at the top, and their tyrosine phosphorylation is shown in the middle. [ 35 S]Met-Cys-labeled lysates of BJAB cells were mixed with bacterially purified Sepharose beads containing GST or the unphosphorylated GST/K1-C or phosphorylated GST/K1-C(P) fusion protein. After 4 h of incubation, beads were washed with lysis buffer and subjected to SDS-PAGE, followed by autoradiography (bottom). Individual proteins were purified from 10 liters of BJAB cells, sliced out of SDS-PAGE gels, and subjected to mass spectrometry. The values on the left are molecular sizes in kilodaltons. (B) In vitro GST pull-down assay. BJAB cell lysates were mixed with GST, GST/K1-C, or GST/K1-C(P) and washed with lysis buffer, followed by immunoblotting with specific antibodies (bottom). GST and the unphosphorylated GST/K1-C and phosphorylated GST/ K1-C(P) fusion proteins are shown at the top, and their tyrosine phosphorylation is shown in the middle. PY and wcl indicate the phosphotyrosine antibody and whole cell lysates, respectively. specificity and efficiently phosphorylates many mammalian proteins in E. coli. We found that over 60% of the GST/K1-C protein purified from E. coli TKX1 was tyrosine phosphorylated by elk kinase (Fig. 1A). To identify cellular proteins interacting with unphosphorylated or phosphorylated K1, the bacterially purified GST/K1-C and GST/K1-C(P) fusion proteins were used as an affinity column for 35 S-labeled lysates of BJAB B cells. Polypeptides with apparent molecular masses of 85, 100, 110, and 140 kda specifically interacted with the GST/K1-C fusion protein, whereas they did not interact with the GST protein (Fig. 1A). Furthermore, polypeptides with apparent molecular masses of 50 to 55, 70, 85, 100, 120, and 160 kda interacted specifically with the GST/K1-C(P) fusion protein but did not interact with the GST and GST/K-1C fusion proteins (Fig. 1A). In an effort to identify cellular proteins interacting with K1, we performed bulk purification with over 10 liters of BJAB cell pellets with GST or with GST/K1-C or GST/K1-C(P) fusion protein. After identification of the purified proteins by mass spectrometry analysis, the interaction of unphosphorylated or phosphorylated K1 protein with most of these cellular proteins was further confirmed in GST pull-down and immunoblot assays using BJAB B-cell lysates (Fig. 1B). These assays showed that the cellular protein that interacted with unphosphorylated GST/ K1-C but poorly with tyrosine-phosphorylated GST/K1-C(P) protein was BTK-associated protein 135 (Bap-135) (Fig. 1A). Conversely, the cellular proteins that interacted only with the tyrosine-phosphorylated GST/K1-C(P) protein but not with the unphosphorylated GST/K1-C protein were Grb2, SH- PTP1/2, the p85 regulatory subunit of phosphatidylinositol 3-kinase (PI3-kinase), Syk, Vav1/3, RasGAP120, and PLC 2 (Fig. 1A and B). The cellular Lyn, SH-PTP1, and SH-PTP2 proteins showed low levels of interaction with unphosphorylated GST/K1-C, and these interactions were significantly enhanced with the phosphorylation of K1 ITAM (Fig. 1). Role of each tyrosine residue of K1 ITAM in the interaction with cellular proteins. The first SH2 binding motif (YY 273 SL) in K1 ITAM bears an additional tyrosine Y 273 residue (Fig. 2A). Interestingly, despite the extensive sequence variation of K1, residue Y 273 has been shown to be completely conserved among over 300 K1 isolates (53), suggesting its potential role in signal transduction. Thus, we designated this tyrosine residue Y 2 to comply with Y 1 and Y 3 of the ITAM sequence (Fig. 2A). To investigate the roles of tyrosine residues of K1 ITAM in the interaction with cellular proteins, each tyrosine residue of K1 ITAM was mutated to phenylalanine to generate Y 1 F, Y 2 F, Y 3 F, Y 1,2 F, Y 2,3 F, Y 1,3 F, and Y 1,2,3 F (TYF). GST/K1-C mutant fusion proteins containing a replacement of the tyrosine residue with phenylalanine were purified from the TKX1 bacterial strains. An immunoblot assay with an antiphosphotyrosine antibody showed that, as seen in mammalian cells (34), the Y 1 and Y 3 residues but not the Y 2 residue of K1 ITAM were phosphorylated in E. coli strain TKX1 (Fig. 2B). Tyrosine-phosphorylated GST/K1-C(P) or GST/K1-C(P) mutant fusion protein was used for in vitro binding assays with BJAB cell lysates. The tyrosine-phosphorylated GST/K1-C, K1-C Y 1 F, K1-C Y 2 F, and K1-C Y 1,2 F fusion proteins bound to Lyn at similar levels; the tyrosine-phosphorylated K1-C Y 3 F, K1-C Y 1,3 F, and K1-C Y 2,3 F GST fusion proteins showed a significant reduction in Lyn interaction; and the K1-C TYF fusion showed no Lyn interaction (Fig. 2C and D). This indicates that the Y 3 residue of K1 ITAM is important for the tyrosine phosphorylation-dependent interaction with Lyn and that the Y 2 residue of K1 ITAM also contributes to this interaction (Fig. 2C and D). In addition, tyrosine-phosphorylated K1-C, K1-C Y 2 F, and K1-C Y 1,2 F GST fusions efficiently bound to Syk, while the other K1-C mutant fusion proteins were not able to bind to Syk (Fig. 2C and D). PLC 2 interaction required the intact ITAM sequence of K1, whereas p85 interaction was primarily dependent on the phosphorylated Y 1 residue of K1 ITAM (Fig. 2C and D). In contrast, the phosphorylated Y 1 or Y 3 residue of K1 ITAM was sufficient to bind to SH-PTP1/2 (Fig. 2C and D). Finally, K1-C binding activity to cellular SH2-containing proteins appeared to be dependent on tyrosine phosphorylation, because these interactions were detected effectively with the tyrosine-phosphorylated GST/ K1-C proteins but poorly with the unphosphorylated GST/ K1-C proteins (data not shown). These results indicate that while K1 cytoplasmic ITAM efficiently binds to cellular SH2- containing Lyn, Syk, PLC 2, p85, and SH-PTP1/2 signaling molecules through its phosphorylated tyrosine residues, each

4 12176 LEE ET AL. J. VIROL. binding requires the specific phosphorylated SH2 binding motifs of K1. Distinct role of each tyrosine residue of K1 ITAM in the elevation of intracellular calcium concentration. Upon engagement with the antigen, BCRs initiate an array of signal transduction events: rapid tyrosine phosphorylation of cellular proteins, increase of intracellular free Ca 2, activation of cellular transcription factor activity, and ultimately, production of cytokine (36). To further examine K1-mediated signal transduction, we constructed KSHV-negative BJAB cells stably expressing WT full-length K1 or its mutants. K1 mutants showed equivalent levels of intracellular and surface expression compared to WT K1 (Fig. 3A and B). We have previously demonstrated that the 2H1 anti-k1 antibody, which recognizes amino acids 92 to 125 of the K1 ectodomain, is capable of inducing an increase in the intracellular Ca 2 concentration (32). BJAB cells expressing WT K1 or its mutant forms were treated with the anti-k1 2H1 antibody, and their intracellular Ca 2 concentration was monitored by flow cytometry. While control BJAB-vector cells showed no alteration of the intracellular Ca 2 concentration, BJAB-K1 and BJAB-K1 Y 2 F cells exhibited rapid increases in the intracellular Ca 2 concentration immediately after anti-k1 antibody stimulation and this response lasted more than 10 min (Fig. 3C). BJAB-K1 Y 1 F cells showed a slightly delayed elevation in the intracellular Ca 2 concentration upon stimulation, and this response was much shorter than that observed in BJAB-K1 cells (Fig. 3C). Interestingly, BJAB-K1 Y 3 F cells showed a significantly reduced level of intracellular Ca 2 elevation but this response lasted for a prolonged period, as seen in BJAB-K1 cells (Fig. 3C). BJAB-K1 Y 1,2 F cells showed the minimal level of intracellular Ca 2 mobilization upon stimulation (Fig. 3C). Finally, BJAB cells expressing K1 Y 1,3 F, K1 Y 2,3 F, or K1 TYF showed little or no response in the elevation of the intracellular Ca 2 concentration under the same conditions (Fig. 3C). These results collectively suggest that the Y 1 residue of K1 ITAM is responsible for the duration of signaling activity, whereas the Y 3 residue of K1 ITAM contributes to the strength of signaling activity. Furthermore, while the Y 2 mutation alone did not affect the intracellular Ca 2 mobilization, its combination with the Y 1 or Y 3 mutation significantly diminished the level of intracellular Ca 2 mobilization, indicating that the Y 2 residue may play an indirect role in K1 ITAMmediated signal transduction. Effect of K1 signaling on the activation of transcription factor activity. To further detail the role of each tyrosine residue in K1 ITAM-mediated signal transduction, we examined whether WT K1 or its mutant expression induced the activa- FIG. 2. Mapping the binding sites in K1 ITAM. (A) Summary of mutant constructs. Three tyrosine residues in K1 ITAM were singly, doubly, or triply mutated to phenylalanine and fused to a pgex4t-1 fusion construct. (B) GST/K1-C fusion proteins and their tyrosine phosphorylation. GST/K1-C constructs were transformed into E. coli DH5 or TKX. After purification, GST, GST/K1-C, and GST/K1-C mutant proteins were detected by Coomassie blue staining (top) and their tyrosine phosphorylation was detected by immunoblotting with antiphosphotyrosine ( PY) antibody 4G10 (bottom). (C) Binding of GST/K1-C(P) fusion protein to cellular SH2-containing proteins. Phosphorylated GST/K1-C(P) fusion proteins were mixed with precleared BJAB cell lysates and subjected to immunoblotting with specific antibodies against SH2-containing signaling proteins. wcl, whole cell lysate. (D) Summary of K1 WT and mutant binding to cellular SH2-containing proteins.

5 VOL. 79, 2005 KSHV K1 SIGNALOSOME FIG. 3. K1-mediated intracellular Ca 2 mobilization. (A) Surface expression of WT K1 and its mutant forms. BJAB cells were transfected with the pcdef vector (Vec), pcdef/k1, and pcdef/k1 mutant constructs, and live cells were sorted by Ficoll-Hypaque centrifugation at 24 h posttransfection. These cells were then incubated with 1 mg/ml of G418 for 6 to 8 weeks and tested for K1 surface expression with an anti-k1 antibody. A histogram of each cell line (dark blue shaded) is overlaid with a dotted-line histogram of the anti-mouse total IgG antibody used as an isotype control. (B) WT and mutant K1 expression. WT and mutant K1 expression in BJAB cells was detected by immunoblotting with an anti-k1 antibody. (C) K1-mediated intracellular Ca 2 mobilization. Calcium mobilization was monitored over time by changes in the ratio of violet to blue (405 nm to 485 nm) fluorescence of cells loaded with indo-1 and analyzed by flow cytometry. Data are presented as a histogram of the number of cells with a particular fluorescence ratio (y axis) versus time (x axis). Arrowheads indicate the addition of anti-k1 antibody (Ab) 2H1. Ionomycin was added as a control for intracellular calcium mobilization. The breaks in the graphs indicate the time intervals during addition of antibodies. Data were similar in three independent experiments. tion of cellular AP-1 and NF-AT transcription factor activity. At 24 h postelectroporation with each transcription factor luciferase reporter construct together with K1 or its mutant expression vector, lysates of BJAB cells were used to measure luciferase activity. pgk- -gal expressing -galactosidase from a phosphoglucokinase promoter was included as a transfection control. WT K1 and K1 Y 2 F expression drastically activated AP-1 and NF-AT transcription factor activity (Fig. 4A). In contrast, the K1 Y 1 F, K1 Y 3 F, K1 Y 2,3 F, K1 Y 1,3 F, and K1 TYF mutants poorly activated AP-1 and NF-AT transcription activity, indicating that the Y 1 and Y 3 residues but not the Y 2 residue of K1 ITAM are required for the full strength of NF-AT and AP-1 transcription activation (Fig. 4A). Surprisingly, the additional mutation at the Y 2 residue restored the ability of the K1 Y 1 F mutant to induce NF-AT transcription activation to the level seen with WT K1, but only partially restored its ability to induce AP-1 transcription activation under the same conditions (Fig. 4A). WT K1 and mutant forms of K1 were expressed at equivalent levels (Fig. 4A). Finally, it should be noted that despite their lack of signaling activity, most K1 mutants reproducibly showed a detectable level of NF-AT and AP-1 transcription activation, suggesting that sequences other than that of cytoplasmic ITAM may also play a role in the K1-mediated activation of NF-AT and AP-1 transcription activity (Fig. 4A). To further delineate K1 ITAM function in NF-AT transcription factor activation, we used DT40 chicken B cells. Because of its unusually high homologous recombination efficiency, Lyn knockout (KO), Syk KO, or PLC 2 KO cells from the DT40 B-cell line were established by specific gene targeting (25). To investigate the effects of cellular gene deficiency on K1 signaling, DT40, DT40 Lyn KO, DT40 Syk KO, and DT40 PLC 2 KO cells were electroporated with WT K1 or its mutant expression vector together with the NF-AT luciferase reporter construct. At 48 h postelectroporation, cell lysates were used for luciferase assay. WT K1 expression effectively induced NF-AT transcription factor activity in chicken DT40 B cells, whereas the K1 Y 2 F mutant did so weakly under the same conditions (Fig. 4B). In contrast, WT K1 and its mutant forms were not capable of inducing NF-AT activation in PLC 2- and

6 12178 LEE ET AL. J. VIROL.

7 VOL. 79, 2005 KSHV K1 SIGNALOSOME Syk-deficient DT40 cells (Fig. 4B). To further confirm that the loss of K1 signaling activity was attributed solely to the specific cellular gene deletion and not to other unexpected alterations, the deleted cellular gene for PLC 2 or Syk was restored by transfecting an expression vector containing each cdna into DT40 mutant cell lines. Expression of PLC 2 or Syk in DT40 PLC 2 KO cells or DT40 Syk KO cells, respectively, fully restored K1-mediated NF-AT activation but did partially restore K1 Y 2 F mutant-mediated NF-AT activation (Fig. 4B). In contrast, the expression of PLC 2 or Syk did not supplement the lack of NF-AT activation activity of other K1 mutants in DT40 PLC 2 KO cells or DT40 Syk KO cells (Fig. 4B). These results indicate that cellular PLC 2 and Syk are required for K1-mediated NF-AT activation and that the carboxyl-terminal ITAM sequence is also necessary for PLC 2- and Syk-mediated recovery of K1 signaling activity, which is consistent with their ability to bind K1, as shown in Fig. 3. These results are consistent with previous results that show the essential role of Syk in K1 signal transduction (30). DT40 Lyn KO cells displayed marked differences from DT40 Syk KO and DT40 PLC 2 KO cells in K1-mediated signal transduction. Not only did DT40 Lyn KO cells display a higher background level of NF-AT transcription factor activity than DT40 Syk KO and DT40 PLC 2 KO cells (data not shown), but they also weakly supported K1-mediated activation of NF-AT transcription factor activity (Fig. 4B). Furthermore, as seen in BJAB cells (Fig. 4A), K1 Y 2 F and Y 1,2 F mutants but not Y 1 F, Y 3 F and TYF mutants were capable of inducing NF-AT activation in DT40 Lyn KO cells to a level equivalent to WT K1 (Fig. 4B). In contrast to the expression of Syk and PLC 2, which restored K1 signal transduction in cell lines deficient in Syk and PLC 2 expression, Lyn expression weakly suppressed the K1-mediated activation of NF-AT transcription factor activity, suggesting that Lyn may play an inhibitory role in K1-meidated signal transduction (Fig. 4B). Immunoblot analysis with an anti-k1 antibody showed equivalent expression of WT and mutant forms of K1 in DT40 cells (Fig. 4B). In summary, K1 interactions with individual SH2-containing proteins play distinctive roles in the alteration of lymphocyte signal transduction. Inhibition of K1 signal transduction by Syk and PI3-kinase inhibitors. To further delineate the roles of cellular SH2-containing proteins in K1 signal transduction, we measured intracellular Ca 2 mobilization in the presence or absence of the Syk inhibitor piceatannol, the PI3-kinase/p85 inhibitor wortmannin, the protein kinase C (PKC) kinase inhibitor calphostin C, and the Src kinase inhibitor herbimycin A. BJAB cells were electroporated with the ptracer-gfp or ptracer- GFP-K1 expression vector, and live cells were sorted at 6 h posttransfection. After an additional 16 to 18 h of incubation, sorted cells were individually treated with inhibitors for 1 h, gated for the GFP-positive population, and then subjected to measurement of intracellular Ca 2 mobilization upon anti-k1 2H1 antibody stimulation. This showed that treatment with the Syk inhibitor piceatannol markedly suppressed K1-mediated intracellular Ca 2 mobilization and the p85 inhibitor wortmannin completely abolished K1-mediated intracellular Ca 2 mobilization (Fig. 5A). By contrast, treatment with the PKC kinase inhibitor calphostin C showed no effect on K1-mediated intracellular Ca 2 mobilization whereas the Src kinase inhibitor herbimycin slightly delayed and abated K1-mediated intracellular Ca 2 mobilization (Fig. 5A). To further support these findings, we measured the K1-mediated activation of NF-AT and AP-1 transcription factor activities in the presence or absence of inhibitors. Consistent with the results of intracellular Ca 2 mobilization, treatment with piceatannol and wortmannin, but not with calphostin C, considerably suppressed the K1-mediated activation of NF-AT and AP-1 factor activity (Fig. 5B). Thus, these data indicate that Syk and PI3- kinase are critical for the K1-mediated Ca 2 response and transcription factor activation. K1 signaling induces inflammatory cytokine production. Cytokines or chemokines and angiogenic factors have been proposed to play key roles in the development of KS pathogenesis (8, 19). Since K1 strongly elicits an NF-AT and AP1 transcriptional potential, we tested the effect of K1 on cellular cytokine production using a cytokine antibody array that contains 41 different cytokine antibodies. This procedure uses a sandwich immunoblot assay to profile the expression of cellular cytokines and chemokines. The supernatants of BJAB cells transfected with the vector only or the K1 expression vector were incubated with the array membrane to permit cytokine binding to the immobilized antibodies on the array. The captured cytokines were detected by a mixture of biotin-labeled anticytokine antibodies, followed by streptavidin-horseradish peroxidase and chemiluminescence detection. This assay showed that K1 expression significantly induced the production of IL-1, IL-1, IL-8, IL-10, monocyte-derived chemokine (MDC), and RANTES (Fig. 6A). To further investigate the role of each tyrosine residue of the K1 ITAM sequence in cytokine production, we included K1 Y 1 F, K1 Y 3 F, and K1 TYF mutants in the cytokine antibody array. This also showed that mutations at the Y 1 and/or Y 3 residues of K1 ITAM considerably abolished its ability to induce the production of cytokines except IL-10; the K1 Y 1 F mutant weakly induced IL-10 production (Fig. 6B). Finally, an ELISA was used to determine the specific amounts of MDC and IL-10 from BJAB cells transfected with the vector, WT K1, K1 Y 1 F, K1 Y 2 F, K1 FIG. 4. Activation of NF-AT and AP1 transcription factors activity by K1. (A) Activation of NF-AT and AP1 transcription factor activity by K1 in BJAB cells. WT and mutant forms of K1 were electroporated into BJAB cells with NF-AT- or AP1-luciferase together with pgk- -gal. At 24 h after transfection, cells were washed once in PBS and assayed for luciferase. Luciferase values were normalized by -galactosidase activity to control transfection efficiency. The y axis indicates n-fold induction of NF-AT and AP1 activity by K1 expression. The results are averaged from three independent assays. Columns and lanes: 1, vector only; 2, WT K1; 3, Y 1 F mutant K1; 4, Y 2 F mutant K1; 5, Y 3 F mutant K1; 6, Y 1,2 F mutant K1; 7, Y 1,3 F mutant K1; 8, Y 2,3 F mutant K1; 9, TYF mutant K1. (B) K1-mediated NF-AT activation in DT40 WT and KO cell lines. Fifteen milligrams of pcdef/k1 or mutant constructs, 7 mg of NFAT-luciferase constructs, and 2 mg of -galactosidase plasmids were electroporated into 10 7 DT40 or KO cells. To restore the deleted gene expression in KO cells, 15 mg of PLC 2 or Syk expression vector was included in the transfection mixture. Luciferase activity was evaluated as described for panel A.

8 12180 LEE ET AL. J. VIROL. Downloaded from FIG. 5. Effects of specific inhibitors on K1-mediated Ca 2 mobilization and transcription factor activation. (A) Effects of specific inhibitors on K1-mediated Ca 2 mobilization. BJAB cells stably expressing K1 were loaded with Indo-1 dye and treated with or without 10 mm Syk inhibitor piceatannol, 10 mm PI3-kinase inhibitor wortmannin, 200 mm PKC kinase inhibitor calphostin C (Cal C), or 100 mm Src inhibitor herbimycin A (Herb A) for 30 min before analysis. Intracellular Ca 2 mobilization was measured as described in the legend to Fig. 3B. (B) Effects of specific inhibitors on K1-mediated transcription factor activation. BJAB cells were coelectroporated with 20 mg of pcdef/k1 and 10 mg of NF-AT or AP-1 luciferase constructs. Live cells were separated by Ficoll-Hypaque centrifugation at 6 h posttransfection and aliquoted into six-well plates. Cells were further cultured for an additional 16 to 18 h in the presence or absence of inhibitors, washed once in PBS, and then assayed for luciferase activity. Luciferase values were normalized by -galactosidase activity to control transfection efficiency. The y axis indicates n-fold induction of NF-AT and AP-1 activity by K1 expression. The results are averaged from three independent assays. Y 3 F, or K1 TYF. Consistent with its signaling ability, K1 and K1 Y 2 F expression significantly induced MDC and IL-10 production (Fig. 6C). In addition, as seen in the cytokine antibody array, the K1 Y 1 F mutant weakly induced IL-10 production (Fig. 6C). These data suggest that K1 ITAM-mediated signal transduction ultimately induces cellular cytokine production and that each tyrosine residue of K1 ITAM may play a distinctive role in this process. To further confirm K1-mediated cytokine production, we performed an RPA. Based on cytokine array data, we generated a custom-made RPA template set composed of RANTES, MDC, IL-10, IL-1, IL-1, IL-8, and VEGF. L32 and glyceraldehyde-3-phosphate dehydrogenase were included as internal controls. Figure 7A shows that the levels of the MDC, IL-10, IL-1, IL-1, IL-8, and VEGF mrnas were markedly induced at 6 h and 12 h posttransfection of the K1 expression vector and rapidly diminished thereafter. Interestingly, the RANTES mrna level was significantly increased upon K1 expression and stayed high up to 36 h posttransfection (Fig. 7A). However, the K1 TYF mutant showed no ability to induce cytokine mrna production under the same conditions, indicating that K1 signaling activity is solely required for the induction of cytokine production (Fig. 7B). Finally, cellular L32 and glyceraldehyde-3-phosphate dehydrogenase mrna levels were not altered by K1 expression (Fig. 7A and B). Densitometry analysis further showed the different kinetics of cytokine mrna production induced by K1 expression (Fig. 7C). These results demonstrated that K1 signal transduction leads to the robust production of inflammatory cytokines. DISCUSSION Here we report on the characterization of the K1 signalosome that contains a variety of cellular SH2-containing proteins. on May 7, 2018 by guest

9 VOL. 79, 2005 KSHV K1 SIGNALOSOME Downloaded from FIG. 6. Cytokine antibody array and ELISA. (A) Cytokine antibody array. BJAB cells (10 7 ) were electroporated with 20 mg each of pcdef, pcdef/k1, pcdef/k1 Y 1 F, pcdef/k1 Y 3 F, or pcdef/k1 TYF. Live cells were separated by Ficoll-Hypaque centrifugation at 6 h posttransfection and cultured for additional 30 h. The supernatants were collected, spun down to remove cell debris, and subjected to a cytokine antibody array. The antibody array was carried out in accordance with the manufacturer s recommendations using a cytokine array membrane (Panomics, Redwood City, CA), which contains 42 cytokines and chemokines and six controls. (B) Values from the cytokine array membrane were evaluated by densitometry after subtraction of the background signal and normalized by the control signal. (C) MDC and IL-10 ELISA. Supernatants were prepared as described above. ELISA (BD PharMingen) was carried out in accordance with the manufacturer s recommendations. Vec, vector. on May 7, 2018 by guest Upon stimulation, K1 ITAM is efficiently tyrosine phosphorylated and subsequently interacts with cellular SH2-containing signaling proteins Lyn, Syk, the p85 regulatory subunit of PI3-kinase, PLC 2, RasGAP, Vav, SH-PTP1/2, and Grb2. These interactions ultimately lead to the marked augmentation of cellular signal transduction activity including the increase of cellular tyrosine phosphorylation and intracellular calcium mobilization, activation of the NF-AT and AP-1 transcription factors, and production of inflammatory cytokines. These results demonstrate that KSHV K1 effectively forms a signalosome upon stimulation, which elicits downstream signal transduction and thereby induces inflammatory cytokine production. ITAM, which is responsible for the activation signal, is present in the coreceptor Ig- and Ig- molecules of the BCR complex (6, 17, 52). In resting B cells, the Src family kinase Lyn associates weakly with the BCR by virtue of an interaction between the N-terminal domain of Lyn and the unphosphorylated ITAM of Ig- and Ig- (6, 17, 52). This weak interaction is further stabilized by Lyn binding to the plasma membrane through its SH4 domain (49). Upon receptor ligation, associated Lyn kinase rapidly phosphorylates ITAM (pitam) of Ig- and Ig- of the BCR complex. pitam of Ig- and Ig- of the BCR complex then interacts with SH2-containing kinases, including Syk, which turns on proximal activation signaling

10 12182 LEE ET AL. J. VIROL. FIG. 7. RPA. (A) Induction of cytokine mrnas by K1. BJAB cells (10 7 ) were electroporated with 20 mg of pcdef/k1 WT, and live cells were separated by Ficoll-Hypaque centrifugation at 0, 6, 12, 24, and 36 h postelectroporation. Total RNA was isolated by phenol-chloroform extraction, and contaminated DNA was removed by DNase I treatment. Two milligrams of total RNA was then subjected to RPA using an RPA kit (BD PharMingen, San Diego, CA) according to the manufacturer s recommendations. 32 P-labeled probes before and after RPA were included at the left and right sides of the gel, respectively, as controls. Reverse transcription-pcr was performed to detect K1 and actin expression (bottom). GAPDH, glyceraldehyde-3-phosphate dehydrogenase. (B) Cytokine mrna production by WT K1 but not by TYF mutant K1. BJAB cells ( ) were electroporated with 20 mg of pcdef, pcdef/k1, or pcdef/k1tyf. Live cells were harvested and separated by Ficoll-Hypaque centrifugation at 18 h. RPA was carried out as described above. 32 P-labeled probes before RPA were included at the left side of the gel as controls. Reverse transcription-pcr was performed to detect WT K1, TYF mutant K1, and actin expression (bottom). V, vector. (C) Kinetics of cytokine mrna production induced by K1. Signal intensities are shown as kinetics. The values shown were obtained by subtraction of the background signal intensity. events. Our binding assay showed that the unphosphorylated K1 protein weakly interacted with Lyn and this interaction was dramatically enhanced after K1 tyrosine phosphorylation. This indicates that, as seen with BCR, Lyn loosely associates with unphosphorylated K1 before stimulation and likely initiates K1 phosphorylation upon stimulation. Phosphorylated K1 subsequently interacts with Syk, which elicits a number of signaling events. This hypothesis is supported by the essential role of Syk in the induction of K1-mediated signal transduction. In addition, tyrosine-phosphorylated K1 also interacts with PLC 2, Vav, and Grb2 as parts of The K1 signalosome that play important roles in K1 signal transduction. However, it was to our surprise that K1 was able to weakly induce NF-AT activity in Lyn-deficient DT40 cells and that Lyn expression led to the slight suppression, rather than activation, of K1-mediated NF-AT activation. This is likely because Lyn plays both activating and inhibitory roles in B-cell function (17). In fact, Lyn has been shown to have the ability to negatively regulate signaling pathways through phosphorylation of inhibitory receptors, enzymes, and adaptors (17). It should be noted that K1- mediated activation of NF-AT activity in DT40 Lyn / cells was lower than that in WT, Syk /, and PLCg2 / DT40 cells (Fig. 4B). This was likely because Lyn gene KO resulted in the constitutive activation of B-cell signal transduction, which led to the higher basal level of NF-AT activity and subsequently limited the activation level of NF-AT activity induced by K1. Nevertheless, these results indicate that K1 mimics BCR in the recruitment of the Lyn and Syk kinases. Further study with cellular Lyn and Syk will delineate the detailed mechanism of K1-mediated signal transduction. Receptor-mediated signaling pathways are tightly regulated by a coordinated activity of protein tyrosine kinases and protein tyrosine phosphatases (50). While protein tyrosine kinases are critical for signaling initiation, protein tyrosine phosphatases are involved in terminating activation signals by dephosphorylating the receptors and other components of the signaling cascade. SH-PTP has been shown to be a prominent factor to turn off signals by dephosphorylation of tyrosine residues

11 VOL. 79, 2005 KSHV K1 SIGNALOSOME within ITAM (50). In fact, after a short period of activation, a negative regulatory mechanism mediated by SH-PTP suppresses BCR signal activity back to the inactive status, which is essential for the maintenance of thresholds of BCR activation. Intriguingly, we found that K1 efficiently interacted with SH- PTP1/2. This suggests that, as seen in BCR signal transduction, SH-PTP1/2 may play a feedback-inhibitory role in K1 signal transduction or that K1 may deregulate SH-PTP1/2 to elicit abnormal signal transduction. We found that, unlike BCR signaling, which induced a transient increase of intracellular calcium mobilization upon antigen ligation (less than 2 to 3 min), the K1 signal displayed a considerably prolonged increase of intracellular Ca 2 mobilization upon anti-k1 antibody stimulation he (Fig. 3). This indicates that, unlike BCR, K1 may interact with and deregulate SH-PTP1/2 to induce uncompromised signal transduction upon stimulation, which leads to continuous activation and thereby uncontrolled cell growth. This hypothesis is currently under active investigation. Detailed mutation analysis indicates that each tyrosine residue of K1 ITAM contributes to the interactions with cellular SH2-containing signaling proteins in a distinctive way. Both the Y 1 and Y 3 residues of the K1 ITAM sequence were required for the interaction with Syk and PLC 2, whereas residue Y 1 or Y 3 was sufficient to interact with Lyn, p85, Grb2, and SH-PTP1/2. Furthermore, the Y 3 residue of K1 ITAM played a more significant role in Lyn interaction than the Y 1 residue, whereas the Y 1 residue of K1 ITAM was essential for binding to p85. Furthermore, the analysis of intracellular Ca 2 mobilization showed that the Y 1 residue of K1 ITAM appeared to be responsible for the duration of its signaling activity and the Y 3 residue contributed to the strength of its signaling activity. Finally, despite its high conservation among 300 different K1 alleles, the Y 2 residue did not undergo tyrosine phosphorylation in vitro (Fig. 2) and in vivo (34), indicating that it may not be directly involved in the interaction with the SH2 domain. In fact, mutation at the Y 2 residue did not affect the modulation of intracellular Ca 2 mobilization and the activation of NF-AT and AP-1 factor activity. However, K1 Y 1,2 F and Y 2,3 F mutants showed detectably different features from K1 Y 1 F and Y 3 F mutants, respectively, in the interaction with SH2-containing proteins, the modulation of intracellular Ca 2 mobilization, and the activation of NF-AT factor activity. This indicates that while it does not play a direct role in K1 signal transduction, the Y 2 residue in combination with the Y 1 and Y 3 residues may modulate the stability and/or strength of physical interaction between K1 pitam and SH2-containing proteins. KS is a multifocal angiogenic tumor and appears to be a hyperplastic disorder caused, in part, by local production of inflammatory cytokines such as IL-1, IL-6, gamma interferon, and tumor necrosis factor alpha and growth factors such as basic fibroblast growth factor and VEGF (13 16). Our cytokine antibody array and RPA revealed that K1-medaited signal transduction markedly induced MDC, IL-8, IL-10, VEGF, IL- 1, and RANTES and that this K1 activity required the intact cytoplasmic ITAM sequence. The MDC promoter sequence contains NF-AT, NF- B, and AP-1 binding sites (40), the RANTES promoter sequence has NF-AT and NF- B binding sites (18), the IL-8 and IL-10 promoter sequences contain AP-1 and NF- B binding sites (24, 39), and the VEGF promoter sequence bears SP-1 and AP-1 binding sites (21). The existence of these cis elements in each cytokine gene promoter suggests that K1-mediated activation of cellular transcriptional factor activity results in the up regulation of cytokine expression. Indeed, several reports have demonstrated that K1 efficiently induces IL-8 (47) and VEGF transcription by activating its promoter activity (42, 51). Thus, our results indicate that K1 ITAM forms a unique signalosome where each tyrosine residue has a distinct role in SH2 domain binding and signal transduction activity and that this signalosome ultimately induces the expression of inflammatory cytokine and angiogenic factor genes. This event consequently contributes to efficient virus dissemination and virus-associated angiogenic proliferation. ACKNOWLEDGMENTS We especially thank S. G. Lee, G. A. Koretzky, and A. Weis for providing reagents; S. Gygi for mass spectrometry analysis; and M. Connole for flow cytometry analysis. This work was partly supported by U.S. Public Health Service grants CA106156, CA82057, CA91819, and RR Pinghui Feng and J. Jung are a Leukemia and Lymphoma Society Fellow and a Leukemia and Lymphoma Society Scholar, respectively. REFERENCES 1. Alexander, L., L. Denekamp, A. Knapp, M. R. Auerbach, B. Damania, and R. C. Desrosiers The primary sequence of rhesus monkey rhadinovirus isolate 26-95: sequence similarities to Kaposi s sarcoma-associated herpesvirus and rhesus monkey rhadinovirus isolate J. Virol. 74: Boshoff, C., and R. A. Weiss Kaposi s sarcoma-associated herpesvirus. Adv. Cancer Res. 75: Browning, P. J., J. M. Sechler, M. Kaplan, R. H. Washington, R. Gendelman, R. Yarchoan, B. Ensoli, and R. C. Gallo Identification and culture of Kaposi s sarcoma-like spindle cells from the peripheral blood of human immunodeficiency virus-1-infected individuals and normal controls. Blood 84: Cesarman, E., Y. Chang, P. S. Moore, J. W. Said, and D. M. Knowles Kaposi s sarcoma-associated herpesvirus-like DNA sequences in AIDS-related body-cavity-based lymphomas. N. Engl. J. Med. 332: Chang, Y., E. Cesarman, M. S. Pessin, F. Lee, J. Culpepper, D. M. Knowles, and P. S. Moore Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi s sarcoma. Science 266: Clark, M. R., K. S. Campbell, A. Kazlauskas, S. A. Johnson, M. Hertz, T. A. Potter, C. Pleiman, and J. C. Cambier The B cell antigen receptor complex: association of Ig-alpha and Ig-beta with distinct cytoplasmic effectors. Science 258: Cook, R. D., T. A. Hodgson, A. C. W. Waugh, E. M. Molyneux, E. Borgstein, A. Sherry, C. G. Teo, and S. R. Porter Mixed patterns of transmission of human herpesvirus-8 (Kaposi s sarcoma-associated herpesvirus) in Malawian families. J. Gen. Virol. 83: Cornali, E., C. Zietz, R. Benelli, W. Weninger, L. Masiello, G. Breier, E. Tschachler, A. Albini, and M. Sturzl Vascular endothelial growth factor regulates angiogenesis and vascular permeability in Kaposi s sarcoma. Am. J. Pathol. 149: Damania, B Oncogenic gamma-herpesviruses: comparison of viral proteins involved in tumorigenesis. Nat. Rev. Microbiol. 2: Desrosiers, R. C., V. G. Sasseville, S. C. Czajak, X. Zhang, K. G. Mansfield, A. Kaur, R. P. Johnson, A. A. Lackner, and J. U. Jung A herpesvirus of rhesus monkeys related to the human Kaposi s sarcoma-associated herpesvirus. J. Virol. 71: Eliopoulos, A. G., and L. S. Young LMP1 structure and signal transduction. Semin. Cancer Biol. 11: Ensoli, B., C. Sgadari, G. Barillari, M. C. Sirianni, M. Sturzl, and P. Monini Biology of Kaposi s sarcoma. Eur. J. Cancer 37: Ensoli, B., and M. Sturzl Kaposi s sarcoma: a result of the interplay among inflammatory cytokines, angiogenic factors and viral agents. Cytokine Growth Factor Rev. 9: Ensoli, B., M. Sturzl, and P. Monini Cytokine-mediated growth promotion of Kaposi s sarcoma and primary effusion lymphoma. Semin. Cancer Biol. 10: Fiorelli, V., R. Gendelman, F. Samaniego, P. D. Markham, and B. Ensoli Cytokines from activated T cells induce normal endothelial cells to acquire the phenotypic and functional features of AIDS-Kaposi s sarcoma spindle cells. J. Clin. Investig. 95: Fiorelli, V., R. Gendelman, M. C. Sirianni, H. K. Chang, S. Colombini, P. D. Markham, P. Monini, J. Sonnabend, A. Pintus, R. C. Gallo, and B. Ensoli.

Tyrosine 112 of Latent Membrane Protein 2A Is Essential for Protein Tyrosine Kinase Loading and Regulation of Epstein-Barr Virus Latency

Tyrosine 112 of Latent Membrane Protein 2A Is Essential for Protein Tyrosine Kinase Loading and Regulation of Epstein-Barr Virus Latency JOURNAL OF VIROLOGY, Oct. 1998, p. 7796 7806 Vol. 72, No. 10 0022-538X/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Tyrosine 112 of Latent Membrane Protein 2A Is

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary Figure 1. CD4 + T cell activation and lack of apoptosis after crosslinking with anti-cd3 + anti-cd28 + anti-cd160. (a) Flow cytometry of anti-cd160 (5D.10A11) binding

More information

Supplementary data Supplementary Figure 1 Supplementary Figure 2

Supplementary data Supplementary Figure 1 Supplementary Figure 2 Supplementary data Supplementary Figure 1 SPHK1 sirna increases RANKL-induced osteoclastogenesis in RAW264.7 cell culture. (A) RAW264.7 cells were transfected with oligocassettes containing SPHK1 sirna

More information

Modulation of T-Cell Receptor Signal Transduction by Herpesvirus Signaling Adaptor Protein

Modulation of T-Cell Receptor Signal Transduction by Herpesvirus Signaling Adaptor Protein MOLECULAR AND CELLULAR BIOLOGY, June 2004, p. 5369 5382 Vol. 24, No. 12 0270-7306/04/$08.00 0 DOI: 10.1128/MCB.24.12.5369 5382.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved.

More information

Supplementary Figure 1 Role of Raf-1 in TLR2-Dectin-1-mediated cytokine expression

Supplementary Figure 1 Role of Raf-1 in TLR2-Dectin-1-mediated cytokine expression Supplementary Figure 1 Supplementary Figure 1 Role of Raf-1 in TLR2-Dectin-1-mediated cytokine expression. Quantitative real-time PCR of indicated mrnas in DCs stimulated with TLR2-Dectin-1 agonist zymosan

More information

Lecture 7: Signaling Through Lymphocyte Receptors

Lecture 7: Signaling Through Lymphocyte Receptors Lecture 7: Signaling Through Lymphocyte Receptors Questions to Consider After recognition of its cognate MHC:peptide, how does the T cell receptor activate immune response genes? What are the structural

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Supplementary Figures Supplementary Figure S1. Binding of full-length OGT and deletion mutants to PIP strips (Echelon Biosciences). Supplementary Figure S2. Binding of the OGT (919-1036) fragments with

More information

Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk

Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk Supplementary Figure 1. Normal T lymphocyte populations in Dapk -/- mice. (a) Normal thymic development in Dapk -/- mice. Thymocytes from WT and Dapk -/- mice were stained for expression of CD4 and CD8.

More information

Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6.

Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6. Figure S1. Generation of inducible PTEN deficient mice and the BMMCs (A) B6.129 Pten loxp/loxp mice were mated with B6.129-Gt(ROSA)26Sor tm1(cre/ert2)tyj /J mice. To induce deletion of the Pten locus,

More information

Data Sheet TIGIT / NFAT Reporter - Jurkat Cell Line Catalog #60538

Data Sheet TIGIT / NFAT Reporter - Jurkat Cell Line Catalog #60538 Data Sheet TIGIT / NFAT Reporter - Jurkat Cell Line Catalog #60538 Background: TIGIT is a co-inhibitory receptor that is highly expressed in Natural Killer (NK) cells, activated CD4+, CD8+ and regulatory

More information

Supplementary Figure 1 CD4 + T cells from PKC-θ null mice are defective in NF-κB activation during T cell receptor signaling. CD4 + T cells were

Supplementary Figure 1 CD4 + T cells from PKC-θ null mice are defective in NF-κB activation during T cell receptor signaling. CD4 + T cells were Supplementary Figure 1 CD4 + T cells from PKC-θ null mice are defective in NF-κB activation during T cell receptor signaling. CD4 + T cells were isolated from wild type (PKC-θ- WT) or PKC-θ null (PKC-θ-KO)

More information

The Journal of Experimental Medicine

The Journal of Experimental Medicine Brief Definitive Report Inhibition of T Cell Receptor Signal Transduction by Tyrosine Kinase interacting Protein of Herpesvirus saimiri Nam-Hyuk Cho, Pinghui Feng, Sun-Hwa Lee, Bok-Soo Lee, Xiaozhen Liang,

More information

Recombinant Protein Expression Retroviral system

Recombinant Protein Expression Retroviral system Recombinant Protein Expression Retroviral system Viruses Contains genome DNA or RNA Genome encased in a protein coat or capsid. Some viruses have membrane covering protein coat enveloped virus Ø Essential

More information

HCC1937 is the HCC1937-pcDNA3 cell line, which was derived from a breast cancer with a mutation

HCC1937 is the HCC1937-pcDNA3 cell line, which was derived from a breast cancer with a mutation SUPPLEMENTARY INFORMATION Materials and Methods Human cell lines and culture conditions HCC1937 is the HCC1937-pcDNA3 cell line, which was derived from a breast cancer with a mutation in exon 20 of BRCA1

More information

Chapter 11. B cell generation, Activation, and Differentiation. Pro-B cells. - B cells mature in the bone marrow.

Chapter 11. B cell generation, Activation, and Differentiation. Pro-B cells. - B cells mature in the bone marrow. Chapter B cell generation, Activation, and Differentiation - B cells mature in the bone marrow. - B cells proceed through a number of distinct maturational stages: ) Pro-B cell ) Pre-B cell ) Immature

More information

Supplementary Table; Supplementary Figures and legends S1-S21; Supplementary Materials and Methods

Supplementary Table; Supplementary Figures and legends S1-S21; Supplementary Materials and Methods Silva et al. PTEN posttranslational inactivation and hyperactivation of the PI3K/Akt pathway sustain primary T cell leukemia viability Supplementary Table; Supplementary Figures and legends S1-S21; Supplementary

More information

Protocol for Gene Transfection & Western Blotting

Protocol for Gene Transfection & Western Blotting The schedule and the manual of basic techniques for cell culture Advanced Protocol for Gene Transfection & Western Blotting Schedule Day 1 26/07/2008 Transfection Day 3 28/07/2008 Cell lysis Immunoprecipitation

More information

Cell Lysis Buffer. Catalog number: AR0103

Cell Lysis Buffer. Catalog number: AR0103 Cell Lysis Buffer Catalog number: AR0103 Boster s Cell Lysis Buffer is a ready-to-use Western blot related reagent solution used for efficient extraction of total soluble protein in nondenatured state

More information

Chapter 11. B cell generation, Activation, and Differentiation. Pro-B cells. - B cells mature in the bone marrow.

Chapter 11. B cell generation, Activation, and Differentiation. Pro-B cells. - B cells mature in the bone marrow. Chapter B cell generation, Activation, and Differentiation - B cells mature in the bone marrow. - B cells proceed through a number of distinct maturational stages: ) Pro-B cell ) Pre-B cell ) Immature

More information

Egr-1 regulates RTA transcription through a cooperative involvement of transcriptional regulators

Egr-1 regulates RTA transcription through a cooperative involvement of transcriptional regulators /, 2017, Vol. 8, (No. 53), pp: 91425-91444 Egr-1 regulates RTA transcription through a cooperative involvement of transcriptional regulators Roni Sarkar 1 and Subhash C. Verma 1 1 Department of Microbiology

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi: 10.1038/nature05732 SUPPLEMENTARY INFORMATION Supplemental Data Supplement Figure Legends Figure S1. RIG-I 2CARD undergo robust ubiquitination a, (top) At 48 h posttransfection with a GST, GST-RIG-I-2CARD

More information

Figure S1. PMVs from THP-1 cells expose phosphatidylserine and carry actin. A) Flow

Figure S1. PMVs from THP-1 cells expose phosphatidylserine and carry actin. A) Flow SUPPLEMENTARY DATA Supplementary Figure Legends Figure S1. PMVs from THP-1 cells expose phosphatidylserine and carry actin. A) Flow cytometry analysis of PMVs labelled with annexin-v-pe (Guava technologies)

More information

Nature Methods: doi: /nmeth Supplementary Figure 1

Nature Methods: doi: /nmeth Supplementary Figure 1 Supplementary Figure 1 Subtiligase-catalyzed ligations with ubiquitin thioesters and 10-mer biotinylated peptides. (a) General scheme for ligations between ubiquitin thioesters and 10-mer, biotinylated

More information

Index. Index 439. Aequorin, 84, 94 Affinity precipitation, 372, AP-1, 100 Asthma, 170, 305

Index. Index 439. Aequorin, 84, 94 Affinity precipitation, 372, AP-1, 100 Asthma, 170, 305 Index 439 Index A Aequorin, 84, 94 Affinity precipitation, 372, 376 381 AP-1, 100 Asthma, 170, 305 B Bioassay, 185, comparison with ELISA, 318 GM-CSF bioassay, 351 IL-2 bioassay, 185 192, 300 IL-3 IL-6

More information

Supplementary Appendix

Supplementary Appendix Supplementary Appendix This appendix has been provided by the authors to give readers additional information about their work. Supplement to: Nair S, Branagan AR, Liu J, Boddupalli CS, Mistry PK, Dhodapkar

More information

Nature Immunology: doi: /ni.3631

Nature Immunology: doi: /ni.3631 Supplementary Figure 1 SPT analyses of Zap70 at the T cell plasma membrane. (a) Total internal reflection fluorescent (TIRF) excitation at 64-68 degrees limits single molecule detection to 100-150 nm above

More information

Materials and Methods , The two-hybrid principle.

Materials and Methods , The two-hybrid principle. The enzymatic activity of an unknown protein which cleaves the phosphodiester bond between the tyrosine residue of a viral protein and the 5 terminus of the picornavirus RNA Introduction Every day there

More information

The T cell receptor for MHC-associated peptide antigens

The T cell receptor for MHC-associated peptide antigens 1 The T cell receptor for MHC-associated peptide antigens T lymphocytes have a dual specificity: they recognize polymporphic residues of self MHC molecules, and they also recognize residues of peptide

More information

CYTOKINE RECEPTORS AND SIGNAL TRANSDUCTION

CYTOKINE RECEPTORS AND SIGNAL TRANSDUCTION CYTOKINE RECEPTORS AND SIGNAL TRANSDUCTION What is Cytokine? Secreted popypeptide (protein) involved in cell-to-cell signaling. Acts in paracrine or autocrine fashion through specific cellular receptors.

More information

Supplements. Figure S1. B Phalloidin Alexa488

Supplements. Figure S1. B Phalloidin Alexa488 Supplements A, DMSO, PP2, PP3 Crk-myc Figure S1. (A) Src kinase activity is necessary for recruitment of Crk to Nephrin cytoplasmic domain. Human podocytes expressing /7-NephrinCD () were treated with

More information

Supplementary Data 1. Alanine substitutions and position variants of APNCYGNIPL. Applied in

Supplementary Data 1. Alanine substitutions and position variants of APNCYGNIPL. Applied in Supplementary Data 1. Alanine substitutions and position variants of APNCYGNIPL. Applied in Supplementary Fig. 2 Substitution Sequence Position variant Sequence original APNCYGNIPL original APNCYGNIPL

More information

(PDGF), 9 ( -2 (FGF-2), SMO

(PDGF), 9 ( -2 (FGF-2), SMO Abstract An ethanol extract from shark muscle has been shown to have potent angiogenic activity when mixed together with olive oil in a ratio of 1part extract to 9 parts olive oil. This mixture has been

More information

RayBio KinaseSTAR TM Akt Activity Assay Kit

RayBio KinaseSTAR TM Akt Activity Assay Kit Activity Assay Kit User Manual Version 1.0 March 13, 2015 RayBio KinaseSTAR TM Akt Activity Kit Protocol (Cat#: 68AT-Akt-S40) RayBiotech, Inc. We Provide You With Excellent Support And Service Tel:(Toll

More information

Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation

Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation Construction of a hepatocellular carcinoma cell line that stably expresses stathmin with a Ser25 phosphorylation site mutation J. Du 1, Z.H. Tao 2, J. Li 2, Y.K. Liu 3 and L. Gan 2 1 Department of Chemistry,

More information

Islet viability assay and Glucose Stimulated Insulin Secretion assay RT-PCR and Western Blot

Islet viability assay and Glucose Stimulated Insulin Secretion assay RT-PCR and Western Blot Islet viability assay and Glucose Stimulated Insulin Secretion assay Islet cell viability was determined by colorimetric (3-(4,5-dimethylthiazol-2-yl)-2,5- diphenyltetrazolium bromide assay using CellTiter

More information

Mammalian Tissue Protein Extraction Reagent

Mammalian Tissue Protein Extraction Reagent Mammalian Tissue Protein Extraction Reagent Catalog number: AR0101 Boster s Mammalian Tissue Protein Extraction Reagent is a ready-to-use Western blot related reagent solution used for efficient extraction

More information

HEK293FT cells were transiently transfected with reporters, N3-ICD construct and

HEK293FT cells were transiently transfected with reporters, N3-ICD construct and Supplementary Information Luciferase reporter assay HEK293FT cells were transiently transfected with reporters, N3-ICD construct and increased amounts of wild type or kinase inactive EGFR. Transfections

More information

Functional analysis of LAT in TCR-mediated signaling pathways using a LAT-deficient Jurkat cell line

Functional analysis of LAT in TCR-mediated signaling pathways using a LAT-deficient Jurkat cell line International Immunology, Vol. 11, No. 6, pp. 943 950 Functional analysis of LAT in TCR-mediated signaling pathways using a LAT-deficient Jurkat cell line Weiguo Zhang, Brenda J. Irvin 1,2, Ronald P. Trible,

More information

MEK1 Assay Kit 1 Catalog # Lot # 16875

MEK1 Assay Kit 1 Catalog # Lot # 16875 MEK1 Assay Kit 1 Kit Components Assay Dilution Buffer (ADB), Catalog # 20-108. Three vials, each containing 1.0ml of assay dilution buffer (20mM MOPS, ph 7.2, 25mM ß-glycerol phosphate, 5mM EGTA, 1mM sodium

More information

Structure and Function of Antigen Recognition Molecules

Structure and Function of Antigen Recognition Molecules MICR2209 Structure and Function of Antigen Recognition Molecules Dr Allison Imrie allison.imrie@uwa.edu.au 1 Synopsis: In this lecture we will examine the major receptors used by cells of the innate and

More information

Integrin v 3 targeted therapy for Kaposi s sarcoma with an in vitro evolved antibody 1

Integrin v 3 targeted therapy for Kaposi s sarcoma with an in vitro evolved antibody 1 Integrin v 3 targeted therapy for Kaposi s sarcoma with an in vitro evolved antibody 1 CHRISTOPH RADER, 2 MIKHAIL POPKOV, JOHN A. NEVES, AND CARLOS F. BARBAS III 2 Department of Molecular Biology and The

More information

William C. Comb, Jessica E. Hutti, Patricia Cogswell, Lewis C. Cantley, and Albert S. Baldwin

William C. Comb, Jessica E. Hutti, Patricia Cogswell, Lewis C. Cantley, and Albert S. Baldwin Molecular Cell, Volume 45 Supplemental Information p85 SH2 Domain Phosphorylation by IKK Promotes Feedback Inhibition of PI3K and Akt in Response to Cellular Starvation William C. Comb, Jessica E. Hutti,

More information

Tel: ; Fax: ;

Tel: ; Fax: ; Tel.: +98 216 696 9291; Fax: +98 216 696 9291; E-mail: mrasadeghi@pasteur.ac.ir Tel: +98 916 113 7679; Fax: +98 613 333 6380; E-mail: abakhshi_e@ajums.ac.ir A Soluble Chromatin-bound MOI 0 1 5 0 1 5 HDAC2

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION FOR Liver X Receptor α mediates hepatic triglyceride accumulation through upregulation of G0/G1 Switch Gene 2 (G0S2) expression I: SUPPLEMENTARY METHODS II: SUPPLEMENTARY FIGURES

More information

The Schedule and the Manual of Basic Techniques for Cell Culture

The Schedule and the Manual of Basic Techniques for Cell Culture The Schedule and the Manual of Basic Techniques for Cell Culture 1 Materials Calcium Phosphate Transfection Kit: Invitrogen Cat.No.K2780-01 Falcon tube (Cat No.35-2054:12 x 75 mm, 5 ml tube) Cell: 293

More information

Kaposi s Sarcoma-Associated Herpesvirus OX2 Glycoprotein Activates Myeloid-Lineage Cells To Induce Inflammatory Cytokine Production

Kaposi s Sarcoma-Associated Herpesvirus OX2 Glycoprotein Activates Myeloid-Lineage Cells To Induce Inflammatory Cytokine Production JOURNAL OF VIROLOGY, May 2002, p. 4688 4698 Vol. 76, No. 10 0022-538X/02/$04.00 0 DOI: 10.1128/JVI.76.10.4688 4698.2002 Copyright 2002, American Society for Microbiology. All Rights Reserved. Kaposi s

More information

Autoregulation of DNA Binding and Protein Stability of Kaposi s Sarcoma-Associated Herpesvirus ORF50 Protein

Autoregulation of DNA Binding and Protein Stability of Kaposi s Sarcoma-Associated Herpesvirus ORF50 Protein JOURNAL OF VIROLOGY, Oct. 2004, p. 10657 10673 Vol. 78, No. 19 0022-538X/04/$08.00 0 DOI: 10.1128/JVI.78.19.10657 10673.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. Autoregulation

More information

The pi-value distribution of single-pass membrane proteins at the plasma membrane in immune cells and in total cells.

The pi-value distribution of single-pass membrane proteins at the plasma membrane in immune cells and in total cells. Supplementary Figure 1 The pi-value distribution of single-pass membrane proteins at the plasma membrane in immune cells and in total cells. The PI values were measured for the first 10 amino acids in

More information

Sestrin2 and BNIP3 (Bcl-2/adenovirus E1B 19kDa-interacting. protein3) regulate autophagy and mitophagy in renal tubular cells in. acute kidney injury

Sestrin2 and BNIP3 (Bcl-2/adenovirus E1B 19kDa-interacting. protein3) regulate autophagy and mitophagy in renal tubular cells in. acute kidney injury Sestrin2 and BNIP3 (Bcl-2/adenovirus E1B 19kDa-interacting protein3) regulate autophagy and mitophagy in renal tubular cells in acute kidney injury by Masayuki Ishihara 1, Madoka Urushido 2, Kazu Hamada

More information

TSH Receptor Monoclonal Antibody (49) Catalog Number MA3-218 Product data sheet

TSH Receptor Monoclonal Antibody (49) Catalog Number MA3-218 Product data sheet Website: thermofisher.com Customer Service (US): 1 800 955 6288 ext. 1 Technical Support (US): 1 800 955 6288 ext. 441 TSH Receptor Monoclonal Antibody (49) Catalog Number MA3-218 Product data sheet Details

More information

Expression of acid base transporters in the kidney collecting duct in Slc2a7 -/-

Expression of acid base transporters in the kidney collecting duct in Slc2a7 -/- Supplemental Material Results. Expression of acid base transporters in the kidney collecting duct in Slc2a7 -/- and Slc2a7 -/- mice. The expression of AE1 in the kidney was examined in Slc26a7 KO mice.

More information

Supplementary information

Supplementary information Supplementary information Human Cytomegalovirus MicroRNA mir-us4-1 Inhibits CD8 + T Cell Response by Targeting ERAP1 Sungchul Kim, Sanghyun Lee, Jinwook Shin, Youngkyun Kim, Irini Evnouchidou, Donghyun

More information

KEY CONCEPT QUESTIONS IN SIGNAL TRANSDUCTION

KEY CONCEPT QUESTIONS IN SIGNAL TRANSDUCTION Signal Transduction - Part 2 Key Concepts - Receptor tyrosine kinases control cell metabolism and proliferation Growth factor signaling through Ras Mutated cell signaling genes in cancer cells are called

More information

PRODUCT INFORMATION & MANUAL

PRODUCT INFORMATION & MANUAL PRODUCT INFORMATION & MANUAL 0.4 micron for Overall Exosome Isolation (Cell Media) NBP2-49826 For research use only. Not for diagnostic or therapeutic procedures. www.novusbio.com - P: 303.730.1950 - P:

More information

Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection

Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection Determination of the temporal pattern and importance of BALF1 expression in Epstein-Barr viral infection Melissa Mihelidakis May 6, 2004 7.340 Research Proposal Introduction Apoptosis, or programmed cell

More information

Supplementary information. MARCH8 inhibits HIV-1 infection by reducing virion incorporation of envelope glycoproteins

Supplementary information. MARCH8 inhibits HIV-1 infection by reducing virion incorporation of envelope glycoproteins Supplementary information inhibits HIV-1 infection by reducing virion incorporation of envelope glycoproteins Takuya Tada, Yanzhao Zhang, Takayoshi Koyama, Minoru Tobiume, Yasuko Tsunetsugu-Yokota, Shoji

More information

Supplemental Information. T Cells Enhance Autoimmunity by Restraining Regulatory T Cell Responses via an Interleukin-23-Dependent Mechanism

Supplemental Information. T Cells Enhance Autoimmunity by Restraining Regulatory T Cell Responses via an Interleukin-23-Dependent Mechanism Immunity, Volume 33 Supplemental Information T Cells Enhance Autoimmunity by Restraining Regulatory T Cell Responses via an Interleukin-23-Dependent Mechanism Franziska Petermann, Veit Rothhammer, Malte

More information

Innate Immunity & Inflammation

Innate Immunity & Inflammation Innate Immunity & Inflammation The innate immune system is an evolutionally conserved mechanism that provides an early and effective response against invading microbial pathogens. It relies on a limited

More information

A Hepatocyte Growth Factor Receptor (Met) Insulin Receptor hybrid governs hepatic glucose metabolism SUPPLEMENTARY FIGURES, LEGENDS AND METHODS

A Hepatocyte Growth Factor Receptor (Met) Insulin Receptor hybrid governs hepatic glucose metabolism SUPPLEMENTARY FIGURES, LEGENDS AND METHODS A Hepatocyte Growth Factor Receptor (Met) Insulin Receptor hybrid governs hepatic glucose metabolism Arlee Fafalios, Jihong Ma, Xinping Tan, John Stoops, Jianhua Luo, Marie C. DeFrances and Reza Zarnegar

More information

Data Sheet. NFAT Reporter (Luc) Jurkat Cell line Catalog #: 60621

Data Sheet. NFAT Reporter (Luc) Jurkat Cell line Catalog #: 60621 Data Sheet NFAT Reporter (Luc) Jurkat Cell line Catalog #: 60621 Background The nuclear factor of activator T cells (NFAT) family of transcription factors plays an important role in immune response. T

More information

SUPPLEMENTAL INFORMATION

SUPPLEMENTAL INFORMATION SUPPLEMENTAL INFORMATION EXPERIMENTAL PROCEDURES Tryptic digestion protection experiments - PCSK9 with Ab-3D5 (1:1 molar ratio) in 50 mm Tris, ph 8.0, 150 mm NaCl was incubated overnight at 4 o C. The

More information

T cell maturation. T-cell Maturation. What allows T cell maturation?

T cell maturation. T-cell Maturation. What allows T cell maturation? T-cell Maturation What allows T cell maturation? Direct contact with thymic epithelial cells Influence of thymic hormones Growth factors (cytokines, CSF) T cell maturation T cell progenitor DN DP SP 2ry

More information

Supplementary Material

Supplementary Material Supplementary Material Nuclear import of purified HIV-1 Integrase. Integrase remains associated to the RTC throughout the infection process until provirus integration occurs and is therefore one likely

More information

Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v)

Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v) SUPPLEMENTARY MATERIAL AND METHODS Soft Agar Assay. For each cell pool, 100,000 cells were resuspended in 0.35% (w/v) top agar (LONZA, SeaKem LE Agarose cat.5004) and plated onto 0.5% (w/v) basal agar.

More information

G-Protein Signaling. Introduction to intracellular signaling. Dr. SARRAY Sameh, Ph.D

G-Protein Signaling. Introduction to intracellular signaling. Dr. SARRAY Sameh, Ph.D G-Protein Signaling Introduction to intracellular signaling Dr. SARRAY Sameh, Ph.D Cell signaling Cells communicate via extracellular signaling molecules (Hormones, growth factors and neurotransmitters

More information

Minute TM Plasma Membrane Protein Isolation and Cell Fractionation Kit User Manual (v5)

Minute TM Plasma Membrane Protein Isolation and Cell Fractionation Kit User Manual (v5) Minute TM Plasma Membrane Protein Isolation and Cell Fractionation Kit Catalog number: SM-005 Description Minute TM plasma membrane (PM) protein isolation kit is a novel and patented native PM protein

More information

hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This

hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This SUPPLEMENTAL FIGURE LEGEND Fig. S1. Generation and characterization of. (A) Coomassie staining of soluble hexahistidine tagged GRP78 devoid of the KDEL motif (GRP78-His) on SDS-PAGE. This protein was expressed

More information

Stewart et al. CD36 ligands promote sterile inflammation through assembly of a TLR 4 and 6 heterodimer

Stewart et al. CD36 ligands promote sterile inflammation through assembly of a TLR 4 and 6 heterodimer NFκB (fold induction) Stewart et al. ligands promote sterile inflammation through assembly of a TLR 4 and 6 heterodimer a. mrna (fold induction) 5 4 3 2 1 LDL oxldl Gro1a MIP-2 RANTES mrna (fold induction)

More information

Chapter 11 CYTOKINES

Chapter 11 CYTOKINES Chapter 11 CYTOKINES group of low molecular weight regulatory proteins secreted by leukocytes as well as a variety of other cells in the body (8~30kD) regulate the intensity and duration of the immune

More information

TFEB-mediated increase in peripheral lysosomes regulates. Store Operated Calcium Entry

TFEB-mediated increase in peripheral lysosomes regulates. Store Operated Calcium Entry TFEB-mediated increase in peripheral lysosomes regulates Store Operated Calcium Entry Luigi Sbano, Massimo Bonora, Saverio Marchi, Federica Baldassari, Diego L. Medina, Andrea Ballabio, Carlotta Giorgi

More information

Receptor mediated Signal Transduction

Receptor mediated Signal Transduction Receptor mediated Signal Transduction G-protein-linked receptors adenylyl cyclase camp PKA Organization of receptor protein-tyrosine kinases From G.M. Cooper, The Cell. A molecular approach, 2004, third

More information

Suppl Video: Tumor cells (green) and monocytes (white) are seeded on a confluent endothelial

Suppl Video: Tumor cells (green) and monocytes (white) are seeded on a confluent endothelial Supplementary Information Häuselmann et al. Monocyte induction of E-selectin-mediated endothelial activation releases VE-cadherin junctions to promote tumor cell extravasation in the metastasis cascade

More information

Senior Thesis. Presented to. The Faculty of the School of Arts and Sciences Brandeis University

Senior Thesis. Presented to. The Faculty of the School of Arts and Sciences Brandeis University Greenwald 1 Mouse intercellular adhesion molecule 1 (ICAM-1) isoforms demonstrate different binding affinities to mouse macrophage-1 antigen (Mac-1) and preliminary evidence for alternatively-spliced variants

More information

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods

SUPPLEMENTARY INFORMATION. Supplementary Figures S1-S9. Supplementary Methods SUPPLEMENTARY INFORMATION SUMO1 modification of PTEN regulates tumorigenesis by controlling its association with the plasma membrane Jian Huang 1,2#, Jie Yan 1,2#, Jian Zhang 3#, Shiguo Zhu 1, Yanli Wang

More information

The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein

The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein THESIS BOOK The functional investigation of the interaction between TATA-associated factor 3 (TAF3) and p53 protein Orsolya Buzás-Bereczki Supervisors: Dr. Éva Bálint Dr. Imre Miklós Boros University of

More information

CHAPTER 4 RESULTS. showed that all three replicates had similar growth trends (Figure 4.1) (p<0.05; p=0.0000)

CHAPTER 4 RESULTS. showed that all three replicates had similar growth trends (Figure 4.1) (p<0.05; p=0.0000) CHAPTER 4 RESULTS 4.1 Growth Characterization of C. vulgaris 4.1.1 Optical Density Growth study of Chlorella vulgaris based on optical density at 620 nm (OD 620 ) showed that all three replicates had similar

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature11095 Supplementary Table 1. Summary of the binding between Angptls and various Igdomain containing receptors as determined by flow cytometry analysis. The results were summarized from

More information

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells Margaret S Ebert, Joel R Neilson & Phillip A Sharp Supplementary figures and text: Supplementary Figure 1. Effect of sponges on

More information

Cell Biology Lecture 9 Notes Basic Principles of cell signaling and GPCR system

Cell Biology Lecture 9 Notes Basic Principles of cell signaling and GPCR system Cell Biology Lecture 9 Notes Basic Principles of cell signaling and GPCR system Basic Elements of cell signaling: Signal or signaling molecule (ligand, first messenger) o Small molecules (epinephrine,

More information

Signal transduction by immunoglobulin Fc receptors

Signal transduction by immunoglobulin Fc receptors Signal transduction by immunoglobulin Fc receptors Gabriela Sánchez-Mejorada and Carlos Rosales Immunology Department, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México,

More information

Bioluminescence Resonance Energy Transfer (BRET)-based studies of receptor dynamics in living cells with Berthold s Mithras

Bioluminescence Resonance Energy Transfer (BRET)-based studies of receptor dynamics in living cells with Berthold s Mithras Bioluminescence Resonance Energy Transfer (BRET)-based studies of receptor dynamics in living cells with Berthold s Mithras Tarik Issad, Ralf Jockers and Stefano Marullo 1 Because they play a pivotal role

More information

Structural vs. nonstructural proteins

Structural vs. nonstructural proteins Why would you want to study proteins associated with viruses or virus infection? Receptors Mechanism of uncoating How is gene expression carried out, exclusively by viral enzymes? Gene expression phases?

More information

Signaling Through Immune System Receptors (Ch. 7)

Signaling Through Immune System Receptors (Ch. 7) Signaling Through Immune System Receptors (Ch. 7) 1. General principles of signal transduction and propagation. 2. Antigen receptor signaling and lymphocyte activation. 3. Other receptors and signaling

More information

Electron micrograph of phosphotungstanic acid-stained exosomes derived from murine

Electron micrograph of phosphotungstanic acid-stained exosomes derived from murine 1 SUPPLEMENTARY INFORMATION SUPPLEMENTARY FIGURES Supplementary Figure 1. Physical properties of murine DC-derived exosomes. a, Electron micrograph of phosphotungstanic acid-stained exosomes derived from

More information

SUPPLEMENT. Materials and methods

SUPPLEMENT. Materials and methods SUPPLEMENT Materials and methods Cell culture and reagents Cell media and reagents were from Invitrogen unless otherwise indicated. Antibiotics and Tet-certified serum were from Clontech. In experiments

More information

RAW264.7 cells stably expressing control shrna (Con) or GSK3b-specific shrna (sh-

RAW264.7 cells stably expressing control shrna (Con) or GSK3b-specific shrna (sh- 1 a b Supplementary Figure 1. Effects of GSK3b knockdown on poly I:C-induced cytokine production. RAW264.7 cells stably expressing control shrna (Con) or GSK3b-specific shrna (sh- GSK3b) were stimulated

More information

RayBio Human Phosphotyrosine BTK ELISA Kit

RayBio Human Phosphotyrosine BTK ELISA Kit RayBio Human Phosphotyrosine BTK ELISA Kit Catalog #: PEL-BTK-Y User Manual Last revised August 10, 2016 Caution: Extraordinarily useful information enclosed ISO 13485 Certified 3607 Parkway Lane, Suite

More information

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO

p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Supplementary Information p47 negatively regulates IKK activation by inducing the lysosomal degradation of polyubiquitinated NEMO Yuri Shibata, Masaaki Oyama, Hiroko Kozuka-Hata, Xiao Han, Yuetsu Tanaka,

More information

Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the

Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the Supplementary Figure 1. HOPX is hypermethylated in NPC. (a) Methylation levels of HOPX in Normal (n = 24) and NPC (n = 24) tissues from the genome-wide methylation microarray data. Mean ± s.d.; Student

More information

Effects of Second Messengers

Effects of Second Messengers Effects of Second Messengers Inositol trisphosphate Diacylglycerol Opens Calcium Channels Binding to IP 3 -gated Channel Cooperative binding Activates Protein Kinase C is required Phosphorylation of many

More information

Human Apolipoprotein A1 EIA Kit

Human Apolipoprotein A1 EIA Kit A helping hand for your research Product Manual Human Apolipoprotein A1 EIA Kit Catalog Number: 83901 96 assays 1 Table of Content Product Description 3 Assay Principle 3 Kit Components 3 Storage 4 Reagent

More information

20X Buffer (Tube1) 96-well microplate (12 strips) 1

20X Buffer (Tube1) 96-well microplate (12 strips) 1 PROTOCOL MitoProfile Rapid Microplate Assay Kit for PDH Activity and Quantity (Combines Kit MSP18 & MSP19) 1850 Millrace Drive, Suite 3A Eugene, Oregon 97403 MSP20 Rev.1 DESCRIPTION MitoProfile Rapid Microplate

More information

For the rapid, sensitive and accurate quantification of Ras in various samples

For the rapid, sensitive and accurate quantification of Ras in various samples ab128504 Ras Assay Kit Instructions for Use For the rapid, sensitive and accurate quantification of Ras in various samples This product is for research use only and is not intended for diagnostic use.

More information

Figure 1. Possible role of oncogene activation, receptor, G-protein mutation, or tumor

Figure 1. Possible role of oncogene activation, receptor, G-protein mutation, or tumor Figures Part of introduction Figure 1. Possible role of oncogene activation, receptor, G-protein mutation, or tumor supressor gene deletion in the induction of thyroid carcinoma. ( by James A Fagin, M.D.)

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION doi:1.138/nature9814 a A SHARPIN FL B SHARPIN ΔNZF C SHARPIN T38L, F39V b His-SHARPIN FL -1xUb -2xUb -4xUb α-his c Linear 4xUb -SHARPIN FL -SHARPIN TF_LV -SHARPINΔNZF -SHARPIN

More information

PBMC from each patient were suspended in AIM V medium (Invitrogen) with 5% human

PBMC from each patient were suspended in AIM V medium (Invitrogen) with 5% human Anti-CD19-CAR transduced T-cell preparation PBMC from each patient were suspended in AIM V medium (Invitrogen) with 5% human AB serum (Gemini) and 300 international units/ml IL-2 (Novartis). T cell proliferation

More information

Gladstone Institutes, University of California (UCSF), San Francisco, USA

Gladstone Institutes, University of California (UCSF), San Francisco, USA Fluorescence-linked Antigen Quantification (FLAQ) Assay for Fast Quantification of HIV-1 p24 Gag Marianne Gesner, Mekhala Maiti, Robert Grant and Marielle Cavrois * Gladstone Institutes, University of

More information

Chapter 4 Cellular Oncogenes ~ 4.6 -

Chapter 4 Cellular Oncogenes ~ 4.6 - Chapter 4 Cellular Oncogenes - 4.2 ~ 4.6 - Many retroviruses carrying oncogenes have been found in chickens and mice However, attempts undertaken during the 1970s to isolate viruses from most types of

More information