Supplementary Information for. Autoimmunity as a mechanism for hybrid necrosis, a genetic incompatibility syndrome in plants
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- Cornelius Cox
- 5 years ago
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1 for Autoimmunity as a mechanism for hybrid necrosis, a genetic incompatibility syndrome in plants Kirsten Bomblies, Janne Lempe, Petra Epple, Norman Warthmann, Christa Lanz, Jeffery L. Dangl, and Detlef Weigel Figure S1 (Alignment of DM1 from Uk-3 with Col-0 alleles)...s2 Figure S2 (Trypan Blue staining of seedlings)...s3 Figure S3 (Graph showing PR gene expression in hybrids)...s4 Table S1A (Significantly over-represented GO terms)...s5 Table S1B (Gene categories in differentially expressed genes)...s6 Table S2 (Accession numbers of lines)...s8 Table S3 (Crosses performed and hybrid phenotypes)...s11 Table S4 (Intercrossability of parents of several incompatibilities)...s21 Table S5 (H. parasitica resistance of hybrids and parents)...s22 S1
2 Figure S1 Alignment of Uk-3 DM1 allele with Col-0 At5g41740 and At5g41750 colorcoded for conservation. S2
3 Figure S2 Trypan Blue staining of seedlings. Untreated, ten day old seedlings of the indicated accessions were grown at 23 C and cotyledons were stained with Trypan Blue to visualize ectopic cell death. S3
4 Figure S3 Expression on microarrays of common pathogen response marker genes. Normalized expression of several common pathogen response marker genes for each parent and hybrid combination analyzed. S4
5 Table S1A Significantly over-represented GO terms (among genes different in Uk-1/Uk- 3 F 1 versus parents, but not between parents). GO process # genes Uk F 1 list # in At genome P-value Systemic acquired resistance (SAR) response to biotic stimulus response to pathogen response to other organism response to pest, pathogen or parasite response to stimulus defense response anthocyanin biosynthesis protein targeting to vacuole flavonoid biosynthesis flavonoid metabolism response to stress defense response, response to pathogen, incompatible interaction defense response to pathogen Notes: Statistically significant over-representation of gene ontology (GO) term categories was calculated in GoStat ( P-values are Fisher s Exact test p- values corrected for multiple testing with Benjamini correction as implemented in GoStat. GO term annotation was based on the latest TAIR release ( S5
6 Table S1B Representation of gene categories in list of genes differentially regulated in at least one hybrid versus its parents. Category on array in list expected foldexcess Total chitinase BON1/copine trypsin inhibitor tropinone reductase harpin-induced family glutamate receptor WRKY transcription factor glutathione S-transferase, putative receptor-like kinase MutT/nudix heavy-metal associated FAD binding domain xyloglucan flavin-containing monooxygenase family protein / FMO family protein peroxidase NAM Oxidoreductase, 2OG-Fe(II) oxygenase family protein pathogenesis-related calcium/calmodulin lipase cytochrome P glycosyl hydrolase S-locus protein kinase disease resistance family plant defensin S6
7 leucine-rich repeat GDSL-motif lipase/hydrolase family protein protein kinase nodulin heat shock Senescence-associated (SAG) glycoside hydrolase LEA glycine-rich protein expressed protein AP2 domain DEAD-box zinc finger protein bhlh glycosyl transferase DnaJ transducin-related F-box ethylene-responsive MADS B3 family transcription factor Note: The gene list consists of 1,080 genes (4.7% of genes on the microarray), which are differentially expressed in at least one of the four hybrids tested with respect to its parents. S7
8 S8 Table S2 Accession numbers of lines used. Name NASC ABRC Aa-0 N935 Ak-1 N939 ANH1 N6607 Ba-1 N952 Bay-0 CS22676 Bch-3 N959 Bch-4 N961 Bd-0 N963 Be-1 N967 BG1 N22341 BG2 N22342 BG5 N22345 BG7 N22347 BG9 N22349 Bl-1 N969 Bla-1 N971 Bla-11 N985 Bla-12 N987 Bla-14 N989 Bla-2 N973 Bla-3 N975 Bla-4 N977 Bla-5 N978 Bla-6 N980 Blh-1 N6645 Blh-2 N6657 Bor-4 CS22677 Br-0 N995 Bs-1 N997 Bs-2 N6628 Bs-5 N1001 Bsch-0 N1003 Bsch-1 Bsch-2 N1005 Bu-0 N1007 Bu-11 N1025 Bu-13 N1027 Bur-0 N1029 C24 CS22680 Ca-0 N1061 Cal-0 N1063 Can-0 N1065 Cen-0 N1067 Cha-0 N1069 Chi-0 N1073 Chi-1 N1075 Chi-2 N1077 CIBC1 N22220 CIBC10 N22229 Cit-0 N1081 Cnt-1 N6921 Co-1 N1085 Co-3 N1089 Co-4 N1091 Col-0 N1093 CSHL1 N22419 Ct-1 N1095 Cvi-0 CS22682 Db-0 N1101 Db-1 N1103 Db-2 N6679 Di-2 N1111 Dr-0 N1115 Dra-0 N1117 Dra-1 N1119 Edi-0 N1123 Ei-2 N1125 Ei-4 N1127 Ei-5 N6691 Ei-6 N1131 Eil-0 N1133 El-0 N1135 Ema-1 N1681 En-1 N1137 En-2 N1139 Enk-T N6176 Ep-0 N1141 Er-0 N1143 Est-0 N1149 Est-1 N1151 Estland N6173 Et-0 N1153 Fe-1 N1155 Fei-0 CS22684 Fi-0 N1157 Fi-1 N1159 FM11 N22392 Fr-2 N1169 Fr-3 N1171 Fr-4 N1173 Fr-5 N1175 Fr-6 N1177 Fr-7 N1179 Ga-0 N1181 Ga-2 N1183
9 S9 Gd-1 N1185 Ge-1 N1189 Ge-2 N1191 Gie-0 N1193 Gö-0 N1195 Gö-2 N1197 GOT1 N22277 GOT10 N22286 GOT7 CS22685 Gr-1 N1199 Gr-2 N1201 Gr-3 N1203 Gr-5 N1207 Gr-6 N6728 Gre-0 N1211 Gü-0 N1213 Gü-1 N1215 Gy-0 N1217 Ha-0 N1219 Hau-0 N1221 Hh-0 N1225 Hi-0 N1227 Hl-0 N1229 Hl-2 N1231 Hl-3 N1233 Hn-0 N1235 Hodja-Obi N6178 HR14 N22213 HR15 N22214 HR5 N22205 HR8 N22208 Hs-0 N1237 HS1 N22351 In-0 N1239 Is-0 N1241 Is-1 N1243 Je-0 N1247 Jl-1 N1249 Jl-2 N1251 Jm-1 N1261 Js-0 N1671 Kb-0 N1269 Kil-0 N1271 Kin-0 N1273 Kl-0 N1275 Kl-1 N1277 Kn-0 N1287 KNO1 N22401 Kondara N6175 Kro-0 N1301 KZ10 N22442 KZ11 N22443 La-1 N1303 Lan-0 N1305 Le-0 N1309 Ler-1 N6928 4nLer N3900 Li-10 N6911 Li-2 N6908 Li2:1 N1315 Lip-0 N1337 Ll-0 N1339 Ll-11 N1651 Ll-2 N1343 Lm-2 N1345 Lö-1 N1347 Lö-2 N1349 Lov-5 CS22695 M7943S N6186 Ma-0 N1357 Mc-0 N1363 Me-0 N1365 Mh-1 N1369 Mir-0 N1379 Mnz-0 N1371 Mr-0 N1373 Mrk-0 N1375 Ms-0 N1377 Mt-0 N1381 Mv-0 N1387 Mz-0 N1383 Na-1 N1385 Nc-1 N1389 Nd-0 N1391 Nd-1 N1680 NFA8 CS22687 NFC10 N22191 NFE1 N22163 NFE10 N22172 Nie-0 N1393 Nok-0 N1399 Nok-1 N1401 Nok-2 N1403 Nok-3 N1405 Np-0 N1397 Nw-0 N1409 Nw-1 N1411 Nw-2 N1413 Nw-3 N1415 Ob-0 N1419
10 Ob-1 N1421 Ob-2 N1423 Ob-3 N1425 Old-1 N1427 Old-2 N1429 Or-0 N1433 Ost-0 N1431 Ove-0 N1435 Oy-1 N6929 Pa-2 N1441 Pa-3 N1443 Per-2 N1449 Per-3 N1451 Pf-0 N1453 Pi-0 N1455 Pi-2 N1457 Pla-0 N1459 Pla-1 N1461 Pla-2 N1463 Po-1 N1473 Pog-0 N1477 Pr-0 N1475 PUZ16 N22451 Ra-0 N1481 Rd-0 N1482 REN11 N22263 Ri-0 N1493 RLD1 N913 Rou-0 N1489 RP1 N22362 RP10 N22371 RRS10 CS22689 RRS7 CS22688 Rsch-0 N1491 Rsch-4 N1495 Sav-0 N1515 Se-0 N1503 Sf-2 N1517 Sg-1 N1519 Sg-2 N1521 Shahdara N6180 CS22690 Shokei N1676 Sp-0 N1531 SQ4 N22243 St-0 N1535 Ste-0 N1537 Stw-0 N1539 Su-0 N1541 Ta-0 N1549 Tamm-2 CS22691 Te-0 N1551 Ts-1 N1553 Ts-5 N6871 Ts-6 N1561 Ts-7 N1563 Tsu-1 CS22693 Tu-1 N1569 Ty-0 N1573 Uk-1 N1575 Uk-10 New collection Uk-11 New collection Uk-12 New collection Uk-13 New collection Uk-14 New collection Uk-2 N1579 Uk-3 N1577 Uk-4 N1581 Uk-5 New collection Uk-6 New collection Uk-7 New collection Uk-8 New collection Uk-9 New collection Van-0 N1585 Wa-1 N1587 Wc-1 N1589 Wc-2 N1591 Wei-0 N6182 Wei-1 N1683 Wil-1 N1595 Wil-3 N1599 Wl-0 N1631 Wt-1 N1605 Wt-4 N1611 Wt-5 N1613 Yo-0 N1622 Zü-0 N1627 ABRC = Arabidopsis Biological Resources Center; NASC = Nottingham Arabidopsis Stock Centre. S10
11 Table S3 Crosses performed and hybrid phenotypes. Female Male F 1 pheno Comment type 2n Ler Blh-1 Normal 4n Ler Bla-5 Normal 4n Ler Wa-1 Normal Aa-0 Ga-0 Normal Aa-0 HR15 Normal Aa-0 Uk-1 Normal Ak-1 Uk-1 Normal Ak-1 Uk-3 Normal ANH1 Gr-1 Normal ANH1 Kro-0 Normal Ba-1 Chi-1 Normal Ba-1 Lov-5 Normal Ba-1 Shokei Normal Bay-0 Br-0 Normal Bay-0 C24 Normal Bay-0 Col-0 Normal Bay-0 Fei-0 Normal Bay-0 Tamm2 Normal Bay-0 Ts-1 Normal Bch-3 BG9 Normal Bch-4 Ei-6 Normal Bch-4 Pr-0 Normal Bd-0 Ep-0 Normal Be-1 Bu-13 Normal Be-1 Di-2 Normal Be-1 Ga-2 Normal Be-1 Hi-0 Normal Be-1 Nie-0 Normal BG1 Rsch-0 Normal BG1 Uk-3 Normal BG2 BG7 Normal BG2 Bsch-0 Normal BG5 Kro-0 Normal BG5 Ra-0 Normal BG7 Po-1 Normal Bla-1 Bla-11 Normal Bla-1 Bla-12 Normal Bla-1 Bla14n Normal Bla-1 Bla-2 Normal Bla-1 Bla-3 Normal Bla-1 Bla-4 Normal Bla-1 Bla-6 Normal Bla-1 Hh-0 Class 2 necrosis Bla-1 KZ10 Normal Bla-1 Mir-0 Normal Bla-1 Pla-0 Normal Bla-1 Pla-2 Normal Bla-1 Ts-5 Normal Bla-1 Ts-7 Normal Bla-1 Uk-1 Normal Bla-1 Uk-3 Normal Bla-1 Sha. Class 2 necrosis Bla-11 Mir-0 Normal Bla-11 Se-0 Normal Bla-12 Bla-11 Normal Bla-12 Bla-14 Normal Bla-12 Bla-2 Normal Bla-12 Bla-3 Normal Bla-12 Hh-0 Normal Bla-12 Mir-0 Normal Bla-12 Se-0 Normal Bla-12 Sha. Normal Bla-12 Ts-6 Normal Bla-14 Bla-11 Normal Bla-14 Bla-2 Normal Bla-14 Bla-3 Normal Bla-14 Bla-4 Normal Bla-14 Ll-0 Normal Bla-14 Mir-0 Normal Bla-14 Mt-0 Normal Bla-14 Pi-2 Normal Bla-14 Pla-0 Normal Bla-14 Se-0 Normal Bla-14 Sha. Normal Bla-14 Ts-7 Normal Bla14n Ep-0 Normal Bla14n Est-0 Normal Bla14n Ga-0 Normal Bla14p Per-3 Normal Bla-2 Bla-11 Normal Bla-2 Bla-3 Normal Bla-2 Bla-6 Normal Bla-2 Ll-11 Normal Bla-2 Mir-0 Normal Bla-2 Se-0 Normal Bla-2 Sha. Class 2 necrosis Bla-2 Ts-7 Normal Bla-2 Uk-1 Normal Bla-2 Uk-3 Normal Bla-3 Bla-11 Normal Bla-3 Bla-4 Normal Bla-3 Bla-6 Normal Bla-3 Hh-0 Normal Bla-3 Ll-11 Normal S11
12 Bla-3 Mir-0 Normal Bla-3 Pla-0 Normal Bla-3 Pla-2 Normal Bla-3 Se-0 Class 1 necrosis Bla-3 Sha. Normal Bla-3 Ts-5 Normal Bla-3 Ts-6 Normal Bla-3 Ts-7 Normal Bla-3 Uk-1 Normal Bla-3 Uk-3 Normal Bla-4 Bla-11 Normal Bla-4 Bla-12 Normal Bla-4 Bla-2 Normal Bla-4 Bla-6 Normal Bla-4 Hh-0 Normal Bla-4 Ll-0 Class 1 necrosis Mild Bla-4 Ll-11 Normal Bla-4 Mir-0 Normal Bla-4 Pla-1 Normal Bla-4 Pla-2 Normal Bla-4 Se-0 Normal Bla-4 Shahdara Normal Bla-5 4nLer Normal RC Bla-5 Bla-14 HSL Ploidy Bla-5 Blh-1 HSL Ploidy Bla-5 Hh-0 Class 2 necrosis (also ploidy) Bla-5 Wa-1 Normal Bla-6 Bla-11 Normal Bla-6 Bla-12 Normal Bla-6 Bla-14 Normal Bla-6 Mir-0 Normal Bla-6 Se-0 Normal Bla-6 Ts-7 Normal Blh-1 2nLer Normal Blh-1 Bla-5 HSL Ploidy;RC Blh-1 Hh-0 Normal Blh-1 Wa-1 HSL Ploidy Blh-2 Bla-5 HSL Ploidy Blh-2 Blh-1 Normal Bor-4 Bay-0 Normal Bor-4 Br-0 Normal Bor-4 C24 Normal Bor-4 Cvi-0 Normal Bor-4 Fei-0 Normal Bor-4 NFA8 Normal Br-0 C24 Normal Br-0 Col-0 Normal Br-0 Fei-0 Normal Br-0 St-0 Normal Br-0 Wil-3 Normal Bs-1 Bs-2 Normal Bs-1 Uk-1 Normal Bs-1 Uk-3 Normal Bs-2 Lö-2 Normal Bs-2 Uk-1 Normal Bs-2 Uk-3 Normal Bs-5 Bs-2 Normal Bs-5 Bs-2.2 Normal Bs-5 Kn-0 Normal Bs-5 Lö-1 Normal Bs-5 Lö-2 Normal Bs-5 Uk-1 Normal Bs-5 Uk-3 Normal Bsch-0 HR5 Normal Bsch-0 HR8 Normal Bsch-0 NFE10 Normal Bsch-1 GOT10 Normal Bu-0 Bsch-2 Normal Bu-0 NFE10 Normal Bu-11 Po-1 Normal Bur-0 Bay-0 Normal Bur-0 Br-0 Normal Bur-0 C24 Normal Bur-0 Col-0 Normal Bur-0 Est-1 Normal Bur-0 Lov-5 Normal Bur-0 Pf-0 Normal Bur-0 Ts-1 Normal Ca-0 Bu-11 Normal Cal-0 Bur-0 Normal Cal-0 Ei-5 Normal Cal-0 Lm-2 Normal Cal-0 Wil-1 Normal Can-0 Bla-1 Normal Can-0 Mt-0 Normal Can-0 St-0 Normal Cen-0 Dr-0 Normal Cen-0 Hl-2 Normal Cen-0 Ost-0 Normal Cen-0 Se-0 Normal Cha-0 Pla-0 Normal Cha-0 Se-0 Normal Chi-0 Ak-1 Normal Chi-0 Bla-1 Normal Chi-0 Uk-1 Normal Chi-0 Uk-3 Normal Chi-2 Chi-0 Normal Chi-2 KZ10 Normal S12
13 CIBC1 Bu-11 Normal CIBC1 Chi-1 Normal CIBC10 Bl-1 Normal CIBC10 Hodja- Normal Obi Cit-0 CIBC10 Normal Cit-0 Ei-6 Normal Cit-0 Gy-0 Normal Cnt-1 Gr-1 Normal Co-1 Co-3 Normal Co-1 Oy-1 Normal Co-3 Te-0 Normal Co-4 Co-3 Normal Co-4 Wil-1 Normal Col-0 Bla-5 HSL Ploidy Col-0 Blh-1 Normal Col-0 C24 Normal Col-0 Chi-2 Normal Col-0 Fei-0 Normal Col-0 GOT7 Normal Col-0 NFA8 Normal Col-0 Nie-0 Normal Col-0 Tamm2 Normal Col-0 Ts-1 Normal Ct-1 St-0 Normal Cvi-0 Bur-0 Normal Cvi-0 RRS7 Normal Cvi-0 Uk-1 Normal Cvi-0 Uk-3 Normal Db-1 Db-0 Normal Di-2 Ra-0 Normal Dra-1 Dra-0 Normal Edi-0 En-2 Normal Ei-2 Lm-2 Normal Ei-2 Na-1 Normal Ei-2 Ove-0 Normal Ei-4 CIBC1 Normal Ei-5 Ei-2 Normal Ei-5 Oy-1 Normal Eil-0 El-0 Normal El-0 Eil-0 Normal RC Ema-1 Estland Normal En-1 Uk-3 Normal En-2 RLD1 Normal Er-0 Ang-1 Normal Er-0 Dra-1 Normal Est-0 Hau-0 Normal Est-0 Wa-1 HSL Ploidy Est-1 Br-0 Normal Est-1 Cvi-0 Normal Est-1 Est-0 Normal Est-1 Fei-0 Normal Est-1 Mt-0 Normal Est-1 RRS10 Normal Est-1 Ts-1 Normal Et-0 Bla-1 Normal Et-0 Fe-1 Normal Fe-1 Ge-2 Normal Fe-1 Uk-1 Normal Fe-1 Uk-3 Normal Fei-0 NFA8 Normal Fei-0 Ts-1 Normal Fi-0 Gr-3 Normal FM11 KZ10 Normal FM11 Pa-2 Normal Fr-3 Hodja- Normal Obi Fr-4 Fr-2 Normal Fr-5 Fr-4 Normal Fr-6 RLD1 Normal Fr-6 Uk-1 Normal Fr-6 Uk-3 Normal Fr-7 ENK-T Normal Fr-7 Uk-1 Normal Fr-7 Uk-3 Normal Gd-1 BG5 Normal Gd-1 Bu-13 Normal Gd-1 NFC10 Normal Gd-1 Ste-0 Normal Ge-1 Li-2:1 Normal Ge-2 Cha-0 Normal Gie-0 Fi-1 Normal Gö-0 Gö-2 Normal GOT1 Chi-2 Normal GOT1 Gr-2 Normal GOT1 Gy-0 Normal GOT1 Nok-3 Normal GOT7 Bur-0 Normal GOT7 C24 Normal GOT7 Cvi-0 Normal GOT7 Est-1 Normal GOT7 Sha. Normal GOT7 Ts-1 Normal Gr-1 M7943S Normal Gr-2 Can-0 Normal Gr-2 GOT1 Normal RC Gr-2 Gr-6 Normal Gr-2 In-0 Normal Gr-3 Fi-0 Normal RC Gr-3 Gr-5 Normal S13
14 Gr-3 Gr-6 Normal Gr-3 Per-3 Normal Gr-6 Co-4 Normal Gr-6 Gr-3 Normal RC Gr-6 Hl-0 Normal Gr-6 Oy-1 Normal Gr-6 Rsch-4 Normal Gr-6 Wa-1 HSL Ploidy Gre-0 Bla-5 HSL Ploidy Gre-0 Chi-0 Normal Gü-0 Gü-1 Normal Ha-0 Db-2 Normal Hau-0 Est-0 Normal RC Hau-0 Sha. Normal Hau-0 Wa-1 HSL Ploidy Hh-0 Bla-1 Class 2 necrosis; RC Hh-0 Bla-11 Normal Hh-0 Bla-14 Normal Hh-0 Bla-2 Class 2 necrosis Hh-0 Bla-6 Normal Hh-0 Col-0 Normal Hh-0 Mir-0 Normal Hh-0 Nc-1 Normal Hh-0 Se-0 Class 1 necrosis Hh-0 Ts-7 Normal Hh-0 Uk-1 Normal Hh-0 Uk-3 Normal Hi-0 Be-1 Normal RC Hi-0 Pr-0 Normal Hl-0 Bla-1 Normal Hl-0 Gie-0 Normal Hl-0 Pi-0 Normal Hl-2 Et-0 Normal Hl-2 Mt-0 Normal Hl-3 Sha. Normal Hl-3 Wa-1 HSL Ploidy Hn-0 Bch-4 Normal Hn-0 Ra-0 Normal Hodja- Bu-13 Normal Obi Hodja- Mz-0 Normal Obi HR15 Aa-0 Normal RC HR15 Bs-1 Normal HR15 Gr-6 Normal HR15 Te-0 Normal HR5 Bu-13 Normal Hs-0 Hl-0 Normal Hs-1 ENK-T Normal Hs-1 Mz-0 Normal Is-0 Is-1 Normal Is-1 Nd-0 Normal Je-0 Gie-0 Normal Je-0 Pa-3 Normal Jl-1 Eil-0 Normal Jl-1 Sha. Normal Jl-1 Uk-1 Normal Jl-1 Uk-3 Normal Jl-2 Aa-0 Normal Jl-2 Jl-1 Normal Jl-2 Mt-0 Normal Jl-2 Uk-1 Normal Jl-2 Uk-3 Normal Js-0 Bu-13 Normal Kb-0 M7943S Normal Kil-0 An-1 Normal Kl-0 Kl-1 Normal Kn-0 Uk-3 Normal KNO1 M7943S Normal Kondara NFE1 Normal Kondara YGAP1 Normal Kro-0 Sf-2 Normal KZ10 Gie-0 Normal KZ10 Hh-0 Normal KZ10 Mir-0 Normal KZ10 Mrk-0 Class 3 necrosis KZ10 Uk-1 Normal KZ10 Uk-3 Normal KZ11 Ei-4 Normal KZ11 HR14 Normal KZ11 Mrk-0 Class 3 necrosis KZ11 NFC1 Normal KZ11 Ob-0 Normal KZ11 YGAP1 Normal La-1 ENK-T Normal La-1 Fr-6 Normal La-1 YGAP1 Normal Lan-0 Ll-2 Normal Le-0 GOT1 Normal Le-0 Ll-0 Normal Le-0 Ost-0 Normal Le-0 Pf-0 Normal Ler-1 Br-0 Normal Ler-1 Fei-0 Normal Ler-1 Ts-1 Normal Ler-1 Van-0 Normal Li-10 Kin-0 Normal Li-2 Hodja- Normal Obi Li-2 HR5 Normal Li-2:1 Bla-5 HSL Ploidy S14
15 Li-2:1 Chi-2 Normal Li-2:1 Wa-1 HSL Ploidy Li-2:1 Wil-3 Normal Lip-0 Ei-6 Normal Lip-0 Kn-0 Normal Lip-0 Uk-1 Normal Lip-0 Uk-3 Normal Ll-0 Bla-1 Normal Ll-0 Bla-11 Normal Ll-0 Bla-12 Normal Ll-0 Bla-2 Normal Ll-0 Bla-3 Normal Ll-0 Bla-6 Normal Ll-0 Br-0 Normal Ll-0 Fr-2 Normal Ll-0 Hh-0 Normal Ll-0 Ll-11 Normal Ll-0 Ll-2 Normal Ll-0 Mir-0 Normal Ll-0 Se-0 Normal Ll-0 Ts-5 Normal Ll-0 Ts-7 Normal Ll-11 Bla-1 Normal Ll-11 Bla-11 Normal Ll-11 Bla-12 Normal Ll-11 Bla-14 Normal Ll-11 Bla-6 Normal Ll-11 Cha-0 Normal Ll-11 Hh-0 Normal Ll-11 Ll-0 Normal RC Ll-11 Mir-0 Normal Ll-11 Ove-0 Normal Ll-11 Ts-1 Normal Ll-11 Ts-6 Class 2 necrosis (transient) Ll-11 Ts-7 Normal Ll-2 Bla-1 Normal Ll-2 Bla-11 Normal Ll-2 Bla-12 Normal Ll-2 Bla-14 Normal Ll-2 Bla-2 Normal Ll-2 Bla-3 Normal Ll-2 Bla-4 Normal Ll-2 Bla-6 Normal Ll-2 Hh-0 Normal Ll-2 Ll-11 Normal Ll-2 Mir-0 Normal Ll-2 Se-0 Normal Ll-2 Ts-1 Normal Ll-2 Ts-5 Normal Ll-2 Ts-7 Normal Lm-2 Ei-2 Normal RC Lö-1 Bs-1 Normal Lö-1 Bs-2 Normal Lö-1 Ost-0 Normal Lö-1 Uk-1 Normal Lö-1 Uk-3 Normal Lö-1 Uk-4 Normal Lö-2 Bs-1 Normal Lö-2 Lö-1 Normal Lö-2 Shokei Normal Lö-2 Uk-1 Normal Lö-2 Uk-3 Normal Lö-2 Yo-0 Normal Lov-5 Bay-0 Normal Lov-5 Col-0 Normal Lov-5 Est-1 Normal Lov-5 Fei-0 Normal Lov-5 GOT7 Normal Lov-5 Ts-1 Normal Ma-0 Jm-1 Normal Me-0 Hn-0 Normal Me-0 Kro-0 Normal Mh-1 M78845 Normal Mir-0 Hau-0 Normal Mir-0 Se-0 Class 1 necrosis Mir-0 Uk-3 Normal Mir-0 Wil-3 Normal Mnz-0 BG7 Normal Mnz-0 Hl-0 Normal Mrk-0 Bla-1 Normal Mrk-0 Bla-1 Normal Mrk-0 Co-4 Normal Mrk-0 Hh-0 Normal Mrk-0 KZ10 Class 3 necrosis; RC Mrk-0 Mir-0 Normal Mrk-0 Sha. Normal Mrk-0 Uk-1 Normal Mrk-0 Uk-3 Normal Ms-0 Lm-2 Normal Ms-0 Pa-2 Normal Mt-0 Aa-0 Normal Mt-0 Jl-2 Normal RC Mt-0 Nw-2 Normal Mt-0 Pi-2 Normal Mt-0 Uk-1 Normal Mv-0 Br-0 Normal Mv-0 Uk-2 Normal Mz-0 BG5 Normal Mz-0 Bu-13 Normal S15
16 Na-1 Hl-3 Normal Na-1 Ove-0 Normal Na-1 Uk-1 Normal Na-1 Uk-3 Normal Nd-0 Nd-1 Normal Nd-0 Uk-1 Normal NFA8 Br-0 Normal NFA8 Est-1 Normal NFA8 Ts-1 Normal NFA8 Van-0 Normal NFC1 Be-1 Normal NFC1 FM11 Normal NFC1 Hh-0 Normal NFC1 Np-0 Normal NFC10 Kb-0 Normal NFE10 Me-0 Normal Nie-0 BG5 Normal Nie-0 Cen-0 Normal Nie-0 Chi-2 Normal Nie-0 Fr-6 Normal Nie-0 HR5 Normal Nie-0 Li-10 Normal Nie-0 Sp-0 Normal Nok-0 Nok-1 Normal Nok-0 Uk-1 Normal Nok-0 Uk-3 Normal Nok-2 Nok-0 Normal Nok-2 Nok-1 Normal Nok-2 Nok-3 Normal Nok-2 Pla-0 Normal Nok-3 Nok-0 Normal Nok-3 Nok-1 Normal Nw-1 Nw-0 Normal Nw-1 Uk-1 Normal Nw-1 Uk-3 Normal Nw-2 Aa-0 Normal Nw-2 Jl-2 Normal Nw-2 Mt-0 Normal RC Nw-2 Nw-3 Normal Nw-2 Uk-1 Normal Nw-2 Uk-3 Normal Ob-0 BG5 Normal Ob-0 Chi-1 Normal Ob-0 Hodja- Normal Obi Ob-1 En-1 Normal Ob-2 Ob-1 Normal Old-1 Fr-6 Normal Old-2 Db-2 Normal Or-0 Gy-0 Normal Ost-0 Chi-2 Normal Ost-0 Per-2 Normal Ove-0 Lm-2 Normal Oy-1 Nok-0 Normal Oy-1 Pla-2 Normal Oy-1 Uk-1 Normal Oy-1 Uk-3 Normal Pa-2 Pa-3 Normal Per-2 NFC1 Normal Per-2 Uk-1 Normal Per-3 Gr-3 Normal RC Per-3 Pi-2 Normal Per-3 Rd-0 Normal Pf-0 Uk-1 Normal Pf-0 Uk-3 Normal Pi-0 Bur-0 Normal Pla-0 Bla-1 Normal RC Pla-0 Bla-11 Normal Pla-0 Bla-12 Normal Pla-0 Bla-2 Normal Pla-0 Bla-4 Normal Pla-0 Bla-6 Normal Pla-0 Ge-2 Normal Pla-0 Hh-0 Normal Pla-0 Ll-0 Normal Pla-0 Ll-11 Normal Pla-0 Ll-2 Normal Pla-0 Mir-0 Normal Pla-0 Pla-1 Normal Pla-0 Se-0 Normal Pla-0 Sha. Normal Pla-0 Ts-5 Normal Pla-0 Ts-6 Normal Pla-1 Bla-1 Normal Pla-1 Bla-11 Normal Pla-1 Bla-12 Normal Pla-1 Bla-14 Normal Pla-1 Bla-2 Normal Pla-1 Bla-3 Class 1 necrosis Pla-1 Bla-6 Normal Pla-1 Hh-0 Class 1 necrosis Pla-1 Ll-0 Normal Pla-1 Ll-11 Normal Pla-1 Ll-2 Normal Pla-1 Mir-0 Class 1 necrosis Pla-1 Pla-2 Normal Pla-1 Se-0 Normal Pla-1 Ts-7 Normal Pla-2 Bla-11 Normal Pla-2 Bla-12 Normal S16
17 Pla-2 Bla-14 Normal Pla-2 Bla-2 Normal Pla-2 Bla-6 Normal Pla-2 Hh-0 Normal Pla-2 Ll-0 Normal Pla-2 Ll-11 Normal Pla-2 Ll-2 Normal Pla-2 Mir-0 Normal Pla-2 Pla-0 Normal Pla-2 Sha. Normal Pla-2 Ts-7 Normal Po-1 Wei-0 Normal Pog-0 Uk-1 Normal Pog-0 Uk-3 Normal PUZ16 CSHL1 Normal PUZ16 Fr-2 Normal PUZ16 Pog-0 Normal Rd-0 Rou-0 Normal Rd-0 Uk-1 Normal REN11 Wei-1 Class 3 necrosis Ri-0 Rd-0 Normal RLD1 NFC10 Normal RLD2 Me-0 Normal Rou-0 Rd-0 Normal RC Rou-0 Wt-5 Normal RP1 Blh-2 Normal RP1 RP10 Normal RP-1 Mv-0 Normal RP10 Blh-1 Normal RP10 Fe-1 Normal RRS10 Bor-4 Normal RRS10 Br-0 Normal RRS10 Col-0 Normal RRS10 Fei-0 Normal RRS10 NFA8 Normal RRS10 RRS7 Normal RRS10 Ts-1 Normal RRS7 Bur-0 Normal RRS7 Bay-0 Normal RRS7 Col-0 Normal RRS7 Est-1 Normal RRS7 Tamm2 Normal Rsch-0 BG1 Normal RC Rsch-0 Pog-0 Normal Rsch-4 Wl-0 Normal Se-0 Bla-1 Normal Se-0 KZ10 Normal Se-0 Mir-0 Class 1 necrosis; RC Se-0 Mrk-0 Normal Se-0 Uk-3 Normal Sg-1 Bs-1 Normal Sg-1 Sg-2 Normal Sg-1 Uk-1 Normal Sg-1 Uk-3 Normal Sg-2 Lö-2 Normal Sg-2 Sg-1 Normal Sg-2 Uk-1 Normal Sg-2 Uk-3 Normal Sha. Bla-1 Class 2 necrosis; RC Sha. Bla-11 Normal Sha. Bla-6 Normal Sha. Br-0 Normal Sha. C24 Normal Sha. Col-0 Normal Sha. Est-1 Normal Sha. Fei-0 Normal Sha. Hh-0 Normal Sha. KZ10 Normal Sha. Ll-0 Class 2 necrosis; mild Sha. Ll-11 Normal Sha. Ll-2 Normal Sha. Lov-5 Normal Sha. Mir-0 Normal Sha. Pla-1 Normal Sha. RRS7 Normal Sha. Se-0 Normal Sha. Ts-7 Normal Sha. Uk-1 Normal Sha. Uk-3 Normal Sha. Hl-3 Normal RC Sha. Kondara Normal Sp-0 Gr-1 Normal Sp-0 Li-10 Normal SQ4 Uk-2 Normal Ste-0 Bu-0 Normal Ste-0 Sf-2 Normal Stw-0 Jl-1 Normal Su-0 Ak-1 Normal Su-0 Blh-1 Normal Su-0 Chi-0 Normal Su-0 Col-0 Normal Su-0 Hh-0 Normal Su-0 Tsu-1 Normal Ta-0 SQ4 Normal Tamm-2 Bor-4 Normal Tamm-2 Br-0 Normal Tamm-2 Cvi-0 Normal Tamm-2 Est-1 Normal Tamm-2 Fei-0 Normal S17
18 Tamm-2 Lov-5 Normal Tamm-2 RRS10 Normal Tamm-2 Ts-1 Normal Te-0 Bla-1 Normal Te-0 Je-0 Normal Te-0 Pf-0 Normal Te-0 Uk-1 Normal Te-0 Uk-3 Normal Te-0 Wil-1 Normal Ts-1 Bla-1 Normal Ts-1 Bla-11 Normal Ts-1 Bla-12 Normal Ts-1 Bla-14 Normal Ts-1 Bla-2 Normal Ts-1 Bla-3 Normal Ts-1 Bla-4 Normal Ts-1 Bla-6 Normal Ts-1 Cvi-0 Normal Ts-1 Hh-0 Normal Ts-1 Ll-0 Normal Ts-1 Mir-0 Normal Ts-1 Pla-0 Normal Ts-1 Pla-1 Normal Ts-1 Pla-2 Normal Ts-1 Se-0 Normal Ts-1 Sha. Class 2 necrosis (transient); RC Ts-1 Ts-7 Normal Ts-1 Uk-1 Normal Ts-1 Uk-3 Normal Ts-5 Bla-11 Normal Ts-5 Bla-12 Normal Ts-5 Bla-14 Normal Ts-5 Bla-2 Normal Ts-5 Bla-4 Normal Ts-5 Bla-6 Normal Ts-5 Hh-0 Normal Ts-5 Ll-0 Normal RC Ts-5 Ll-11 Normal Ts-5 Mir-0 Normal Ts-5 Pla-1 Normal Ts-5 Pla-2 Normal Ts-5 Se-0 Normal Ts-5 Sha. Normal Ts-5 Ts-1 Normal Ts-5 Ts-6 Normal Ts-5 Ts-7 Normal Ts-5 Uk-1 Normal Ts-6 Bla-1 Normal Ts-6 Bla-11 Normal Ts-6 Bla-12 Normal RC Ts-6 Bla-14 Normal Ts-6 Bla-2 Normal Ts-6 Bla-4 Normal Ts-6 Bla-6 Normal Ts-6 Hh-0 Normal Ts-6 Ll-0 Normal Ts-6 Ll-2 Normal Ts-6 Mir-0 Normal Ts-6 Pla-1 Normal Ts-6 Pla-2 Normal Ts-6 Se-0 Normal Ts-6 Sha. Normal Ts-6 Ts-1 Normal Ts-6 Ts-7 Normal Ts-6 Uk-1 Normal Ts-6 Uk-3 Normal Ts-7 Bla-1 Normal RC Ts-7 Bla-12 Normal Ts-7 Bla-4 Normal Ts-7 Hh-0 Normal RC Ts-7 Mir-0 Normal Ts-7 Nw-1 Normal Ts-7 Pa-3 Normal Ts-7 Pla-0 Normal Ts-7 Se-0 Normal Tsu-1 Bay-0 Normal Tsu-1 C24 Normal Tsu-1 Col-0 Normal Tsu-1 Est-1 Normal Tsu-1 RRS10 Normal Tsu-1 Tamm2 Normal Tu-1 Pa-3 Normal Tu-1 Ts-7 Normal Ty-0 Mc-0 Normal Ty-0 NFC1 Normal Ty-0 Tsu-1 Normal Uk-1 Bd-0 Normal Uk-1 BG1 Normal Uk-1 Col-0 Normal Uk-1 En-1 Normal Uk-1 Er-0 Normal Uk-1 Kn-0 Normal Uk-1 Mir-0 Normal Uk-1 Nc-1 Class 3 necrosis Uk-1 Np-0 Normal Uk-1 Se-0 Normal Uk-1 Uk-10 Normal Uk-1 Uk-11 Normal Uk-1 Uk-12 Normal S18
19 Uk-1 Uk-13 Normal Uk-1 Uk-2 Normal Uk-1 Uk-3 Class 3 necrosis Uk-1 Uk-5 Normal Uk-1 Uk-7 Normal Uk-1 Uk-8 Normal Uk-1 Uk-9 Normal Uk-1 Wt-4 Normal Uk-10 Uk-11 Normal Uk-10 Uk-9 Normal Uk-11 Uk-12 Normal Uk-11 Uk-14 Normal Uk-11 Uk-5 Normal Uk-11 Uk-7 Normal Uk-11 Uk-9 Normal Uk-13 Uk-10 Normal Uk-13 Uk-11 Normal Uk-13 Uk-12 Normal Uk-13 Uk-7 Normal Uk-14 Uk-1 Normal Uk-14 Uk-10 Normal Uk-14 Uk-12 Normal Uk-14 Uk-13 Normal Uk-14 Uk-7 Normal Uk-3 Aa-0 Normal Uk-3 Bd-0 Normal Uk-3 Col-0 Normal Uk-3 Er-0 Normal Uk-3 Mt-0 Normal Uk-3 Nc-1 Normal Uk-3 Np-0 Normal Uk-3 Uk-1 Class 3 necrosis; RC Uk-3 Uk-10 Normal Uk-3 Uk-11 Normal Uk-3 Uk-12 Normal Uk-3 Uk-13 Normal Uk-3 Uk-14 Normal Uk-3 Uk-2 Normal Uk-3 Uk-5 Normal Uk-3 Uk-6 Normal Uk-3 Uk-7 Normal Uk-3 Uk-8 Normal Uk-3 Uk-9 Normal Uk-3 Wt-4 Normal Uk-4 Pa-3 Normal Uk-4 Uk-1 Normal Uk-4 Uk-3 Normal Uk-5 Uk-10 Normal Uk-5 Uk-12 Normal Uk-5 Uk-13 Normal Uk-5 Uk-14 Normal Uk-5 Uk-6 Normal Uk-5 Uk-9 Normal Uk-6 Uk-1 Class 3 necrosis Uk-6 Uk-10 Normal Uk-6 Uk-11 Normal Uk-6 Uk-12 Normal Uk-6 Uk-13 Normal Uk-6 Uk-14 Normal Uk-6 Uk-7 Normal Uk-6 Uk-8 Normal Uk-6 Uk-9 Normal Uk-7 Uk-10 Normal Uk-7 Uk-12 Normal Uk-7 Uk-5 Normal Uk-7 Uk-8 Normal Uk-7 Uk-9 Normal Uk-8 Uk-10 Normal Uk-8 Uk-11 Normal Uk-8 Uk-12 Normal Uk-8 Uk-13 Normal Uk-8 Uk-14 Normal Uk-8 Uk-5 Normal Uk-8 Uk-9 Normal Uk-9 Uk-12 Normal Uk-9 Uk-13 Normal Uk-9 Uk-14 Normal Van-0 Bay-0 Normal Van-0 Bor-4 Normal Van-0 Br-0 Normal Van-0 C24 Normal Van-0 Fei-0 Normal Van-0 Ts-1 Normal Wa-1 4nLer Normal Wa-1 Bla-5 Normal Wa-1 Blh-1 HSL Ploidy Wa-1 Ob-3 HSL Ploidy Wc-2 Tu-1 Normal Wc-2 Wc-1 Normal Wei-0 Be-1 Normal Wei-1 REN11 Class 3 necrosis; RC Wil-1 Mir-0 Normal Wil-1 Pla-0 Normal Wil-1 Wil-3 Normal Wil-3 Br-0 Normal RC Wil-3 Col-0 Normal Wl-0 Bur-0 Normal Wt-1 Wt-4 Normal RC Wt-4 Gr-3 Normal Wt-4 Per-3 Normal S19
20 Wt-4 Wt-1 Normal Wt-5 Rou-0 Normal RC Yo-0 Ba-1 Normal Yo-0 Mr-0 Normal Zü-0 Li-2 Normal Zü-0 Sav-0 Normal Zü-1 Be-1 Normal Sha. = Shahdara RC = Reciprocal cross; HSL = high seed lethality; Ploidy = Ploidy difference between parents. S20
21 Table S4 Intercrossability of parents of several incompatibilities. Uk-1 Uk-3 Mir-0 Se-0 Bla-1 Hh-0 Shah dara KZ10 Mrk-0 Uk-1 I (III) C C C C C C C Uk-3 C C C C C C C Mir-0 I (I) C C C C C Se-0 C I (I) C C C Bla-1 I (II) I (II) C C Hh-0 C C C Shahdara C C KZ10 I (III) Mrk-0 C = compatible, I = incompatible ( class in parentheses). S21
22 Table S5 H. parasitica resistance of hybrids and parents. Cala2 Emco5 Noco2 Emwa1 Uk-1 R S nd nd Uk-3 R S nd nd Uk-1/Uk-3 nd R nd nd Bla-1 R R R S Hh-0 R R R S Bla-1/Hh-0 nd nd nd S Mrk-0 S S nd nd KZ10 S R nd nd Mrk-0/KZ10 R nd nd nd Se-0 S R S 1 S Mir-0 R R S 1 R Se-0/Mir-0 nd nd R nd 1 weak sporulator (approx. 2 sporangiophores/cotyledon) S22
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